Rorug03G0265200

Alpha-L-arabinofuranosidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
25788264 .. 25789643
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0265200.1

Sequence Viewer

Length: 1380 bp
ATGTTTATTTTCCTTGCTGAAACGCACCAGAACAGTGATTATGTAAATAAGATTAGAAGTCAGATGGGCTTTTTTGAAGGTTTTAACGTGGATCCTTTGAATACGGCAGGCGGGTTATGTCTTTGGTGGAACTCCGAGTCACGTGTTGAGATTGTGGATTTTTCAAAGTTCTTTATTGATACTTTGATAACTCTACCCAAATCTAATACCCCTGTTAGAATAACCTGGATGTATGGTCCGCCTTATTCGGCGGACAAGGATGCTTTTTGGAGTTCATGGAACAATCAAGGAGGTGATGTTGAAACCCCCTGGCTAGTAATTGGAGATCTAAATGAGCTGCTATGCCAACATGAAAGAGAGGGAGGAGCCGCTTGGAGCCCAAACCGTAGATTTTTACTGAGATCTTTTATGAATACTAATTCCCTGTTGGATATAGGTTTTAAAGGGCAAAGGTTCACTTGGGCCCGAAAGGTAGGTGACTTAATTGTTTTACAAGAAAGGCTGGATAGGTGCTTAGCCAATGATCACTGGTTACTGGATTGGCCAAACACTTGTCTCACTCACCTCACAAGAATAGGATCTGATCATAACCCTATTCTTATGAGTACCAACCCACCTTTGAAGAGACACAAGGCTGCTTTTAAGTTTGACTCTTTTTGGGCTGATGATCCGGAGGCTGGGCTCTTGATTGAGGAGGGCTGGACTTCGGTTTCTACCCTCCCAAATGTAAAAAACTGGACTGCTAATCTCAATCGTTGCCATTCTAGCTTAAGGAATTGGAGTAAGAAAAAATTCCCTAAGTGTAACAAGGTGGAGATTAAACAATGTCTAGAAGAGTTAGAAACGCTGCAACTACAATGTCCTTTTTCTAGCACTGAGAAACAACAGGAACTATCCACCAAGCTGGGTTCTCTTTGGTTACGGGAAGAGAAGTACTGGCATCAGAGGTCTAGAATCAAATGGTTAAAATTTGGCGATTCAAATACCAGATTTTTTCATCTATCTACTATCCACAGGAGACAAAGGAATCGGATTTTGAAAATTCAAAATGAAGCAGATGTGTGGGTAGTTGGTGAAAACCTTATCCGGTCTGAGTTTGAAAATCAGTTCAAGAAGATTTTTACAAAATCGAGGTCCCGATTTTGGGGAGATGTTTTTAAGGGGGCTTCCCCTATTGTGTCGGAAGACATGAACAGCAGGCTATTAGCGCCCTTCTCGCTGGAGGAAGTGAAGGCTGCAGCTAATCAGTTGGGGGCTTTGAAGGCTCCGGGGCCAGATGGATTCCCGGGTCTTTTTTACCACAAGTATTGGAATATTGTGAAGGAGGTGGTTTGGGAGACAACGAAGGATTTCAGAAACGGTTGTGTTAGGCTGATGTAG

Protein Analysis

459

Amino Acids

53.45

Weight (kDa)

8.93

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 4 cut(s) 111, 239, 251, 369
AclWI GGATC 4 cut(s) 86, 99, 586, 662
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 3 cut(s) 791, 968, 1041
AcvI CACGTG 1 cut(s) 143
AfaI GTAC 2 cut(s) 607, 935
AfiI CCNNNNNNNGG 3 cut(s) 677, 1143, 1144
AflII CTTAAG 1 cut(s) 769
AflIII ACRYGT 1 cut(s) 142
AjnI CCWGG 2 cut(s) 224, 308
AluBI AGCT 4 cut(s) 337, 768, 904, 1241
AluI AGCT 4 cut(s) 337, 768, 904, 1241
Alw26I GTCTC 4 cut(s) 560, 619, 1012, 1331
AlwI GGATC 4 cut(s) 86, 99, 586, 662
Ama87I CYCGRG 1 cut(s) 1285
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 3 cut(s) 462, 542, 1271
ApaI GGGCCC 1 cut(s) 466
ApeKI GCWGC 5 cut(s) 337, 635, 847, 1235, 1238
ApoI RAATTY 3 cut(s) 791, 968, 1041
ArsI GACNNNNNNTTYG 2 cut(s) 1118, 1150
Asp700I GAANNNNTTC 2 cut(s) 791, 1349
AspLEI GCGC 1 cut(s) 1210
AspS9I GGNCC 5 cut(s) 236, 462, 463, 1134, 1271
AsuC2I CCSGG 3 cut(s) 1269, 1286, 1287
AsuHPI GGTGA 4 cut(s) 305, 488, 554, 1085
AvaI CYCGRG 1 cut(s) 1285
AvaII GGWCC 2 cut(s) 236, 1134
BaeGI GKGCMC 1 cut(s) 466
BalI TGGCCA 1 cut(s) 544
BamHI GGATCC 1 cut(s) 91
BanII GRGCYC 3 cut(s) 380, 466, 684
BbrPI CACGTG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 1191
BbvI GCAGC 5 cut(s) 324, 622, 834, 1222, 1250
BccI CCATC 2 cut(s) 58, 1271
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 226, 310
BclI TGATCA 2 cut(s) 523, 583
BcnI CCSGG 3 cut(s) 1269, 1286, 1287
BcoDI GTCTC 4 cut(s) 560, 619, 1012, 1331
BfaI CTAG 5 cut(s) 314, 765, 830, 870, 951
BfmI CTRYAG 1 cut(s) 1236
BfoI RGCGCY 1 cut(s) 1211
BfrI CTTAAG 1 cut(s) 769
BglII AGATCT 2 cut(s) 325, 401
BisI GCNGC 6 cut(s) 338, 369, 636, 848, 1236, 1239
BlpI GCTNAGC 1 cut(s) 514
BlsI GCNGC 6 cut(s) 339, 370, 637, 849, 1237, 1240
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 5 cut(s) 226, 310, 1269, 1286, 1287
Bme18I GGWCC 2 cut(s) 236, 1134
BmeT110I CYCGRG 1 cut(s) 1285
BmgT120I GGNCC 5 cut(s) 236, 462, 463, 1134, 1271
BmiI GGNNCC 7 cut(s) 93, 367, 377, 464, 1136, 1266, 1272
BmrFI CCNGG 5 cut(s) 226, 310, 1269, 1286, 1287
BmsI GCATC 2 cut(s) 250, 949
BpiI GAAGAC 1 cut(s) 1191
BpmI CTGGAG 1 cut(s) 1241
Bpu1102I GCTNAGC 1 cut(s) 514
BpuMI CCSGG 3 cut(s) 1269, 1286, 1287
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 308, 1268, 1285
BsaWI WCCGGW 2 cut(s) 670, 1086
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 677, 1143, 1144
Bse1I ACTGG 4 cut(s) 533, 540, 740, 941
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 2 cut(s) 226, 310
BseDI CCNNGG 3 cut(s) 308, 1268, 1285
BseGI GGATG 2 cut(s) 234, 265
BseLI CCNNNNNNNGG 3 cut(s) 677, 1143, 1144
BseMII CTCAG 3 cut(s) 389, 867, 1083
BseNI ACTGG 4 cut(s) 533, 540, 740, 941
BseRI GAGGAG 2 cut(s) 378, 707
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 5 cut(s) 324, 622, 834, 1222, 1250
BseYI CCCAGC 2 cut(s) 677, 904
BshFI GGCC 3 cut(s) 464, 544, 1273
BsiHKCI CYCGRG 1 cut(s) 1285
BsiSI CCGG 4 cut(s) 671, 1087, 1268, 1286
BslFI GGGAC 1 cut(s) 1120
BslI CCNNNNNNNGG 3 cut(s) 677, 1143, 1144
BsmAI GTCTC 4 cut(s) 560, 619, 1012, 1331
BsmFI GGGAC 1 cut(s) 1120
BsnI GGCC 3 cut(s) 464, 544, 1273
BsoBI CYCGRG 1 cut(s) 1285
Bsp120I GGGCCC 1 cut(s) 462
Bsp1286I GDGCHC 3 cut(s) 380, 466, 684
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
Bsp1720I GCTNAGC 1 cut(s) 514
BspACI CCGC 4 cut(s) 111, 239, 251, 369
BspANI GGCC 3 cut(s) 464, 544, 1273
BspCNI CTCAG 3 cut(s) 390, 868, 1084
BspEI TCCGGA 1 cut(s) 670
BspLI GGNNCC 7 cut(s) 93, 367, 377, 464, 1136, 1266, 1272
BspMAI CTGCAG 1 cut(s) 1240
BspPI GGATC 4 cut(s) 86, 99, 586, 662
BspTI CTTAAG 1 cut(s) 769
BsrI ACTGG 4 cut(s) 533, 540, 740, 941
BssECI CCNNGG 3 cut(s) 308, 1268, 1285
BssMI GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
Bst2UI CCWGG 2 cut(s) 226, 310
Bst4CI ACNGT 3 cut(s) 35, 386, 1361
Bst6I CTCTTC 3 cut(s) 617, 828, 921
BstAFI CTTAAG 1 cut(s) 769
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 109, 1199
BstDEI CTNAG 5 cut(s) 398, 514, 798, 876, 1092
BstF5I GGATG 2 cut(s) 234, 265
BstH2I RGCGCY 1 cut(s) 1211
BstHHI GCGC 1 cut(s) 1210
BstKTI GATC 7 cut(s) 94, 328, 404, 526, 581, 586, 670
BstMAI GTCTC 4 cut(s) 560, 619, 1012, 1331
BstMBI GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
BstMWI GCNNNNNNNGC 4 cut(s) 765, 1207, 1216, 1262
BstNI CCWGG 2 cut(s) 226, 310
BstSCI CCNGG 5 cut(s) 224, 308, 1267, 1284, 1285
BstSFI CTRYAG 1 cut(s) 1236
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 5 cut(s) 324, 622, 834, 1222, 1250
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 4 cut(s) 91, 325, 401, 578
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 4 cut(s) 91, 325, 401, 578
BsuRI GGCC 3 cut(s) 464, 544, 1273
BtsCI GGATG 2 cut(s) 234, 265
BtsIMutI CAGTG 3 cut(s) 40, 526, 873
Cac8I GCNNGC 2 cut(s) 109, 1199
CfoI GCGC 1 cut(s) 1210
Cfr13I GGNCC 5 cut(s) 236, 462, 463, 1134, 1271
Cfr9I CCCGGG 1 cut(s) 1285
Csp6I GTAC 2 cut(s) 606, 934
CspCI CAANNNNNGTGG 2 cut(s) 1289, 1324
CviAII CATG 3 cut(s) 276, 350, 1189
CviQI GTAC 2 cut(s) 606, 934
DdeI CTNAG 5 cut(s) 398, 514, 798, 876, 1092
DpnI GATC 7 cut(s) 93, 327, 403, 525, 580, 585, 669
DpnII GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 542
Eam1104I CTCTTC 3 cut(s) 617, 828, 921
EarI CTCTTC 3 cut(s) 617, 828, 921
EciI GGCGGA 2 cut(s) 228, 266
Eco24I GRGCYC 3 cut(s) 380, 466, 684
Eco47I GGWCC 2 cut(s) 236, 1134
Eco72I CACGTG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 1285
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRII CCWGG 2 cut(s) 224, 308
EcoT38I GRGCYC 3 cut(s) 380, 466, 684
FaeI CATG 3 cut(s) 279, 353, 1192
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FaqI GGGAC 1 cut(s) 1120
FatI CATG 3 cut(s) 275, 349, 1188
FauI CCCGC 1 cut(s) 104
FbaI TGATCA 2 cut(s) 523, 583
Fnu4HI GCNGC 6 cut(s) 338, 369, 636, 848, 1236, 1239
FokI GGATG 2 cut(s) 241, 272
FriOI GRGCYC 3 cut(s) 380, 466, 684
Fsp4HI GCNGC 6 cut(s) 338, 369, 636, 848, 1236, 1239
FspBI CTAG 5 cut(s) 314, 765, 830, 870, 951
GlaI GCGC 1 cut(s) 1209
GluI GCNGC 6 cut(s) 338, 369, 636, 848, 1236, 1239
GsaI CCCAGC 2 cut(s) 681, 908
GsuI CTGGAG 1 cut(s) 1241
HaeII RGCGCY 1 cut(s) 1211
HaeIII GGCC 3 cut(s) 464, 544, 1273
HapII CCGG 4 cut(s) 671, 1087, 1268, 1286
HhaI GCGC 1 cut(s) 1210
Hin1II CATG 3 cut(s) 279, 353, 1192
Hin6I GCGC 1 cut(s) 1208
HinP1I GCGC 1 cut(s) 1208
HinfI GANTC 6 cut(s) 137, 650, 954, 977, 1027, 1281
HpaII CCGG 4 cut(s) 671, 1087, 1268, 1286
HphI GGTGA 4 cut(s) 305, 488, 554, 1085
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 8 cut(s) 63, 136, 583, 945, 1032, 1093, 1183, 1355
Hpy188III TCNNGA 6 cut(s) 671, 685, 830, 951, 1111, 1137
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 6 cut(s) 71, 1222, 1225, 1255, 1315, 1339
HpyCH4III ACNGT 3 cut(s) 35, 386, 1361
HpyCH4IV ACGT 2 cut(s) 87, 142
HpyCH4V TGCA 2 cut(s) 850, 1238
HpyF10VI GCNNNNNNNGC 4 cut(s) 765, 1207, 1216, 1262
HpyF3I CTNAG 5 cut(s) 398, 514, 798, 876, 1092
HpySE526I ACGT 2 cut(s) 87, 142
Hsp92II CATG 3 cut(s) 279, 353, 1192
HspAI GCGC 1 cut(s) 1208
Kpn2I TCCGGA 1 cut(s) 670
Ksp22I TGATCA 2 cut(s) 523, 583
Kzo9I GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
LmnI GCTCC 3 cut(s) 365, 375, 1270
Lsp1109I GCAGC 5 cut(s) 324, 622, 834, 1222, 1250
LweI GCATC 2 cut(s) 250, 949
MaeI CTAG 5 cut(s) 314, 765, 830, 870, 951
MaeII ACGT 2 cut(s) 87, 142
MaeIII GTNAC 5 cut(s) 138, 476, 531, 803, 918
MalI GATC 7 cut(s) 93, 327, 403, 525, 580, 585, 669
MboI GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
MboII GAAGA 5 cut(s) 634, 845, 938, 1126, 1196
MflI RGATCY 4 cut(s) 91, 325, 401, 578
MhlI GDGCHC 3 cut(s) 380, 466, 684
MlsI TGGCCA 1 cut(s) 544
MluCI AATT 7 cut(s) 318, 418, 483, 775, 791, 968, 1041
MluNI TGGCCA 1 cut(s) 544
MlyI GAGTC 2 cut(s) 146, 644
MmeI TCCRAC 2 cut(s) 408, 1161
Mox20I TGGCCA 1 cut(s) 544
MroI TCCGGA 1 cut(s) 670
MroXI GAANNNNTTC 2 cut(s) 791, 1349
MscI TGGCCA 1 cut(s) 544
MseI TTAA 8 cut(s) 84, 441, 482, 642, 770, 819, 965, 1158
Msp20I TGGCCA 1 cut(s) 544
MspCI CTTAAG 1 cut(s) 769
MspI CCGG 4 cut(s) 671, 1087, 1268, 1286
MspR9I CCNGG 5 cut(s) 226, 310, 1269, 1286, 1287
MvaI CCWGG 2 cut(s) 226, 310
MwoI GCNNNNNNNGC 4 cut(s) 765, 1207, 1216, 1262
NciI CCSGG 3 cut(s) 1269, 1286, 1287
NdeII GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
NlaIII CATG 3 cut(s) 279, 353, 1192
NlaIV GGNNCC 7 cut(s) 93, 367, 377, 464, 1136, 1266, 1272
NmuCI GTSAC 2 cut(s) 138, 476
PdmI GAANNNNTTC 2 cut(s) 791, 1349
PfeI GAWTC 4 cut(s) 954, 977, 1027, 1281
PkrI GCNGC 6 cut(s) 339, 370, 637, 849, 1237, 1240
PleI GAGTC 2 cut(s) 145, 644
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
PpsI GAGTC 2 cut(s) 145, 644
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 1134
Psp5II RGGWCCY 1 cut(s) 1134
Psp6I CCWGG 2 cut(s) 224, 308
PspCI CACGTG 1 cut(s) 143
PspFI CCCAGC 2 cut(s) 677, 904
PspGI CCWGG 2 cut(s) 224, 308
PspN4I GGNNCC 7 cut(s) 93, 367, 377, 464, 1136, 1266, 1272
PspOMI GGGCCC 1 cut(s) 462
PspPI GGNCC 5 cut(s) 236, 462, 463, 1134, 1271
PspPPI RGGWCCY 1 cut(s) 1134
PstI CTGCAG 1 cut(s) 1240
PsuI RGATCY 4 cut(s) 91, 325, 401, 578
RsaI GTAC 2 cut(s) 607, 935
RsaNI GTAC 2 cut(s) 606, 934
SaqAI TTAA 8 cut(s) 84, 441, 482, 642, 770, 819, 965, 1158
SatI GCNGC 6 cut(s) 338, 369, 636, 848, 1236, 1239
Sau3AI GATC 7 cut(s) 91, 325, 401, 523, 578, 583, 667
Sau96I GGNCC 5 cut(s) 236, 462, 463, 1134, 1271
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 2 cut(s) 146, 644
ScrFI CCNGG 5 cut(s) 226, 310, 1269, 1286, 1287
SduI GDGCHC 3 cut(s) 380, 466, 684
SfaNI GCATC 2 cut(s) 250, 949
SfcI CTRYAG 1 cut(s) 1236
SinI GGWCC 2 cut(s) 236, 1134
SmaI CCCGGG 1 cut(s) 1287
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
Sse9I AATT 7 cut(s) 318, 418, 483, 775, 791, 968, 1041
SsiI CCGC 4 cut(s) 111, 239, 251, 369
SspI AATATT 1 cut(s) 1315
SspMI CTAG 5 cut(s) 314, 765, 830, 870, 951
StyD4I CCNGG 5 cut(s) 224, 308, 1267, 1284, 1285
TaaI ACNGT 3 cut(s) 35, 386, 1361
TaiI ACGT 2 cut(s) 90, 145
TaqI TCGA 1 cut(s) 1130
TasI AATT 7 cut(s) 318, 418, 483, 775, 791, 968, 1041
TatI WGTACW 1 cut(s) 933
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 4 cut(s) 954, 977, 1027, 1281
Tru1I TTAA 8 cut(s) 84, 441, 482, 642, 770, 819, 965, 1158
Tru9I TTAA 8 cut(s) 84, 441, 482, 642, 770, 819, 965, 1158
TscAI CASTG 3 cut(s) 40, 533, 880
TseFI GTSAC 2 cut(s) 138, 476
TseI GCWGC 5 cut(s) 337, 635, 847, 1235, 1238
Tsp45I GTSAC 2 cut(s) 138, 476
TspDTI ATGAA 6 cut(s) 264, 366, 425, 986, 1065, 1205
TspMI CCCGGG 1 cut(s) 1285
TspRI CASTG 3 cut(s) 40, 533, 880
Vha464I CTTAAG 1 cut(s) 769
VpaK11BI GGWCC 2 cut(s) 236, 1134
XapI RAATTY 3 cut(s) 791, 968, 1041
XbaI TCTAGA 2 cut(s) 829, 950
XmaI CCCGGG 1 cut(s) 1285
XmnI GAANNNNTTC 2 cut(s) 791, 1349
XspI CTAG 5 cut(s) 314, 765, 830, 870, 951
ZrmI AGTACT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.