Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007807

Physical Location & Seq

Genomic Coordinates Reverse (-)

42833315 .. 42849309

Gene Structure 15995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGAAGGCCGTCGTCTTGCTCTGCTGCTGCTGCTGCTTTCTGTTCCAATGTTTCGCTGTTGGAGTTGATACAAACCAGACAGCAGAGCTGCTTGTTGATGCTTCTCAATCATCCGGACGACTAGTATCTCCAACACTCTTTGGAATTTTCTTCGAGGAGATTAACCATGCTGGCGCTGGTGGGTTGTGGGCTGAACTTGTAAGCAACAGAGGTTTTGAATCTGGGGGACCTAACACTCCTTCCAACATTGATCCCTGGTCAATTATTGGGAATGAGTCATCTTTGCTTGTATCGACGGACCGGTCGTCATGTTTCGAGCGCAATAAAGTTGCACTTCGAATGGAGGTTCTATGTGACAGCCAAGATGCCAATATCTGTCCTTCTGGGGGTGTTGGTATTTATAACCCTGGGTTCTGGGGCATGAATGTTGAAAAAGGGAAGACCTACATTGTAACTCTTTATGTTCGTTCATCTGGAGCAATCAATGTATCTGTATCGTTGACGAGTTCCAATGGATTGCAGACTTTTGCTGCTGATAACATTATAGCTTCTGTTTCAGAAGTTTCAAACTGGACGAAATTTAAAGTTCTGTTGGAAGCCAAAGCAACAAATCCTAGTTCAAGATTGCAATTGACAACCACCAGAAAAGGGTTGATATGGTTTGATCAAGTGTCAGTCATGCCTTCGGACACATACAAGGGACATGGATTTAGGAAGGACCTTGTCGACATGTTGGCAGATCTAAAACCCCAATTTATTAGATTTCCAGGTGGCTGTTTTGTTGAAGGTGAATGGTTAAGAAATGCATTTCGTTGGAAAGAAACAATTGGACCATGGGAAGAGAGACCTGGACACTTTGGTGATGTCTGGATGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTTTTGCAACTAGCAGAAGACCTTGGTACACGGCCAATATGGGTGTTCAACAATGGAATCAGCCACAATGATCAAGTTGATACTTCCAATGTCTTACCGTTTGTACAGGAAGCTCTTGATGGTATTGAGTTTGCTAGGGGCGATCCTGATTCTACATGGGGTTCTCTCCGTGCCACAATGGGACACCCAGAGCCCTTTGACTTGAGATATGTTGCTGTTGGGAATGAGGATTGTGGCAAAAAGAATTACCGAGGAAATTACCTTAAGTTCTACAGTGCTATAAAGCGTGCCTATCCGGACATCCAAATAATTTCTAACTGCGATGGCTCTTCTCAACCTTTGGATCATCCAGCTGATTTGTATGACTTTCATGTTTATACTTCAGCAAGCAACATGTTTTCGATGGCTCATCGGTTTGATCGTGCACCACGTAAGGGTCCCAAGGCTTTTGTGAGTGAGTATGCTGTGACCGGAAAAGATGCTGGAGCAGGAAGTCTTCTCGCAGCATTGGCAGAAGCTGGATTTCTGATTGGGCTTGAAAAAAACAGTGATGTTGTTGAGATGGCAAGTTATGCGCCACTCTTTGTGAATGCCAATAACAAGCGGTGGAACCCAGATGCAATCGTGTTTAACTCCTCACAGCTGTATGGAACTCCTAGCTACTGGGTGCAATGTTTTTTTAGTGAATCAAGTGGAGCAACTATTTTCAATGCAACACTCCAAACAAATTCTTCTACTTCACTTCTTGCATCTGCAATTTCGTGGAAAAGTTCTGAAGATCAGAATACTTACCTAAGAATTAAGATTGTGAACTTTGGAAGCAACATAGTAAATCTTACGATCCGTGTTGATGGGTTGGGGCCAAATTTTGTTGGTCTGTCTGGATCAACCAAGACTGTGCTCACATCTAAAAATGTGATGGATGAGAACTCGTTTGGTGAGCCAAAGAAGGTCATACCGAACCCGAGTCTACTTGAACAGGCTGGTGAGGAAATGGATGTTGGACTTTCTGCACATTCCTTCACTTCAATTGATTTGTTAATGGAACCAAGTTATATCAGGACTGGAGCTGATTCTTTCTCCCTGTCTTCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Alpha-L-AF_C

Protein Analysis

667

Amino Acids

73.18

Weight (kDa)

5.02

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASD1_dom	PF22848	245 - 446	7.1e-59	Alpha-L-arabinofuranosidase 1 domain
Alpha-L-AF_C	PF06964	466 - 642	9.4e-23	Alpha-L-arabinofuranosidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10740 AT3G10740 AT3G10740 AT3G10740
fragaria_vesca	FvH4_1g29140 FvH4_1g29140
malus_domestica	MD12G1112100.v1.1 MD14G1101200.v1.1
prunus_persica	Prupe.7G021200_v2.0.a1 Prupe.7G021200_v2.0.a1 Prupe.7G021200_v2.0.a1
pyrus_communis	pycom12g09150 pycom14g08790
rosa_chinensis	RchiOBHm_Chr3g0494401
rosa_laevigata	RLG00000022674
rosa_multiflora	Rmu_sc0001481.1_g000002
rosa_roxburghii	Rroxscaffold_6G00391120
rosa_rugosa	Rorug03G0265100 Rorug03G0265200
rosa_samantha	Rh3AG315400 Rh3BG350600 Rh3CG347300 Rh3DG349900
rosa_wichuraiana	Rw3G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	301
AccI	GTMKAC	2 cut(s)	726, 1876
AccIII	TCCGGA	2 cut(s)	113, 1201
AciI	CCGC	1 cut(s)	1510
AclWI	GGATC	5 cut(s)	245, 1043, 1257, 1741, 1798
AcoI	YGGCCR	1 cut(s)	938
AcsI	RAATTY	4 cut(s)	144, 578, 1633, 1771
AcuI	CTGAAG	2 cut(s)	1272, 1701
AfaI	GTAC	3 cut(s)	875, 934, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	386, 648, 1340
AflII	CTTAAG	1 cut(s)	1169
AflIII	ACRYGT	2 cut(s)	729, 1299
AgeI	ACCGGT	1 cut(s)	300
AhdI	GACNNNNNGTC	1 cut(s)	304
AhlI	ACTAGT	1 cut(s)	121
AjnI	CCWGG	4 cut(s)	254, 406, 766, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	1890, 1922
AleI	CACNNNNGTG	1 cut(s)	858
AluBI	AGCT	8 cut(s)	88, 548, 1019, 1259, 1424, 1549, 1566, 1976
AluI	AGCT	8 cut(s)	88, 548, 1019, 1259, 1424, 1549, 1566, 1976
Alw21I	GWGCWC	2 cut(s)	1333, 1809
Alw26I	GTCTC	1 cut(s)	838
Alw44I	GTGCAC	1 cut(s)	1329
AlwI	GGATC	5 cut(s)	245, 1043, 1257, 1741, 1798
AlwNI	CAGNNNCTG	1 cut(s)	1424
Ama87I	CYCGRG	1 cut(s)	1870
Aor13HI	TCCGGA	2 cut(s)	113, 1201
AoxI	GGCC	3 cut(s)	6, 938, 1766
ApaLI	GTGCAC	1 cut(s)	1329
ApeKI	GCWGC	7 cut(s)	24, 27, 30, 33, 88, 530, 1409
ApoI	RAATTY	4 cut(s)	144, 578, 1633, 1771
AsiGI	ACCGGT	1 cut(s)	300
AspLEI	GCGC	3 cut(s)	176, 321, 1483
AspS9I	GGNCC	6 cut(s)	227, 298, 718, 830, 1343, 1766
AsuHPI	GGTGA	4 cut(s)	800, 872, 1856, 1904
AsuII	TTCGAA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	1870
AvaII	GGWCC	5 cut(s)	227, 298, 718, 830, 1343
BaeGI	GKGCMC	1 cut(s)	1333
BanII	GRGCYC	1 cut(s)	1101
BbsI	GAAGAC	4 cut(s)	446, 930, 1394, 1986
Bbv12I	GWGCWC	2 cut(s)	1333, 1809
BbvI	GCAGC	7 cut(s)	11, 14, 17, 20, 75, 517, 1421
BccI	CCATC	7 cut(s)	881, 1019, 1223, 1303, 1462, 1751, 1819
BceAI	ACGGC	1 cut(s)	953
BciT130I	CCWGG	4 cut(s)	256, 408, 768, 849
BclI	TGATCA	2 cut(s)	664, 976
BcoDI	GTCTC	1 cut(s)	838
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	5 cut(s)	122, 615, 917, 1041, 1563
BfmI	CTRYAG	1 cut(s)	1177
BfoI	RGCGCY	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	1169
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	7 cut(s)	25, 28, 31, 34, 89, 531, 1410
BlsI	GCNGC	7 cut(s)	26, 29, 32, 35, 90, 532, 1411
Bme1390I	CCNGG	4 cut(s)	256, 408, 768, 849
Bme18I	GGWCC	5 cut(s)	227, 298, 718, 830, 1343
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	1870
BmgT120I	GGNCC	6 cut(s)	227, 298, 718, 830, 1343, 1766
BmiI	GGNNCC	6 cut(s)	228, 1344, 1345, 1517, 1767, 1953
BmrFI	CCNGG	4 cut(s)	256, 408, 768, 849
BmrI	ACTGGG	1 cut(s)	1579
BmsI	GCATC	5 cut(s)	88, 355, 1375, 1513, 1664
BmuI	ACTGGG	1 cut(s)	1579
BpiI	GAAGAC	4 cut(s)	446, 930, 1394, 1986
BpmI	CTGGAG	3 cut(s)	495, 1410, 1992
Bpu14I	TTCGAA	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	1129
BsaAI	YACGTR	1 cut(s)	1337
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	7 cut(s)	254, 406, 407, 833, 928, 1156, 1347
BsaWI	WCCGGW	4 cut(s)	113, 300, 1201, 1376
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 648, 1340
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	4 cut(s)	575, 881, 1574, 1975
Bse3DI	GCAATG	1 cut(s)	1583
BseAI	TCCGGA	2 cut(s)	113, 1201
BseBI	CCWGG	4 cut(s)	256, 408, 768, 849
BseDI	CCNNGG	7 cut(s)	254, 406, 407, 833, 928, 1156, 1347
BseGI	GGATG	6 cut(s)	110, 876, 1206, 1252, 1834, 1909
BseLI	CCNNNNNNNGG	3 cut(s)	386, 648, 1340
BseMI	GCAATG	1 cut(s)	1583
BseNI	ACTGG	4 cut(s)	575, 881, 1574, 1975
BseRI	GAGGAG	2 cut(s)	170, 1531
BseSI	GKGCMC	1 cut(s)	1333
BseXI	GCAGC	7 cut(s)	11, 14, 17, 20, 75, 517, 1421
BsgI	GTGCAG	1 cut(s)	1902
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	8, 940, 1768
BshTI	ACCGGT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	1333, 1809
BsiHKCI	CYCGRG	1 cut(s)	1870
BsiSI	CCGG	4 cut(s)	114, 301, 1202, 1377
BslFI	GGGAC	4 cut(s)	240, 714, 1101, 1329
BslI	CCNNNNNNNGG	3 cut(s)	386, 648, 1340
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	4 cut(s)	240, 714, 1101, 1329
BsmI	GAATGC	1 cut(s)	1501
BsnI	GGCC	3 cut(s)	8, 940, 1768
Bso31I	GGTCTC	1 cut(s)	838
BsoBI	CYCGRG	1 cut(s)	1870
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	3 cut(s)	1101, 1333, 1809
Bsp13I	TCCGGA	2 cut(s)	113, 1201
Bsp1407I	TGTACA	1 cut(s)	1009
Bsp19I	CCATGG	1 cut(s)	833
BspACI	CCGC	1 cut(s)	1510
BspANI	GGCC	3 cut(s)	8, 940, 1768
BspEI	TCCGGA	2 cut(s)	113, 1201
BspLI	GGNNCC	6 cut(s)	228, 1344, 1345, 1517, 1767, 1953
BspPI	GGATC	5 cut(s)	245, 1043, 1257, 1741, 1798
BspQI	GCTCTTC	1 cut(s)	1240
BspT104I	TTCGAA	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	1169
BspTNI	GGTCTC	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	1583
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	1009
BsrI	ACTGG	4 cut(s)	575, 881, 1574, 1975
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	7 cut(s)	254, 406, 407, 833, 928, 1156, 1347
BssT1I	CCWWGG	3 cut(s)	833, 928, 1347
Bst2UI	CCWGG	4 cut(s)	256, 408, 768, 849
Bst4CI	ACNGT	4 cut(s)	1005, 1181, 1454, 1804
Bst6I	CTCTTC	2 cut(s)	834, 1240
BstAFI	CTTAAG	1 cut(s)	1169
BstAPI	GCANNNNNTGC	1 cut(s)	1478
BstAUI	TGTACA	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	1337
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	172, 1194, 1294
BstDEI	CTNAG	1 cut(s)	1700
BstDSI	CCRYGG	1 cut(s)	833
BstF5I	GGATG	6 cut(s)	110, 876, 1206, 1252, 1834, 1909
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	176, 321, 1483
BstMAI	GTCTC	1 cut(s)	838
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 33, 1415, 1478
BstNI	CCWGG	4 cut(s)	256, 408, 768, 849
BstNSI	RCATGY	2 cut(s)	733, 1303
BstSCI	CCNGG	4 cut(s)	254, 406, 766, 847
BstSFI	CTRYAG	1 cut(s)	1177
BstSLI	GKGCMC	1 cut(s)	1333
BstV1I	GCAGC	7 cut(s)	11, 14, 17, 20, 75, 517, 1421
BstV2I	GAAGAC	4 cut(s)	446, 930, 1394, 1986
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	8, 940, 1768
BtgI	CCRYGG	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	1242
BtsCI	GGATG	6 cut(s)	110, 876, 1206, 1252, 1834, 1909
BtsIMutI	CAGTG	2 cut(s)	1186, 1459
Cac8I	GCNNGC	3 cut(s)	172, 1194, 1294
CaiI	CAGNNNCTG	1 cut(s)	1424
CfoI	GCGC	3 cut(s)	176, 321, 1483
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	6 cut(s)	227, 298, 718, 830, 1343, 1766
CpoI	CGGWCCG	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	874, 933, 1010
CspAI	ACCGGT	1 cut(s)	300
CspI	CGGWCCG	1 cut(s)	298
CviQI	GTAC	3 cut(s)	874, 933, 1010
DdeI	CTNAG	1 cut(s)	1700
DraI	TTTAAA	1 cut(s)	583
DrdI	GACNNNNNNGTC	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	938
Eam1104I	CTCTTC	2 cut(s)	834, 1240
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	2 cut(s)	834, 1240
Eco130I	CCWWGG	3 cut(s)	833, 928, 1347
Eco24I	GRGCYC	1 cut(s)	1101
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	5 cut(s)	227, 298, 718, 830, 1343
Eco57I	CTGAAG	2 cut(s)	1272, 1701
Eco88I	CYCGRG	1 cut(s)	1870
EcoO109I	RGGNCCY	3 cut(s)	227, 718, 1343
EcoRII	CCWGG	4 cut(s)	254, 406, 766, 847
EcoT14I	CCWWGG	3 cut(s)	833, 928, 1347
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	1101
ErhI	CCWWGG	3 cut(s)	833, 928, 1347
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	4 cut(s)	240, 714, 1101, 1329
FbaI	TGATCA	2 cut(s)	664, 976
FblI	GTMKAC	2 cut(s)	726, 1876
Fnu4HI	GCNGC	7 cut(s)	25, 28, 31, 34, 89, 531, 1410
FokI	GGATG	6 cut(s)	97, 883, 1193, 1239, 1841, 1916
FriOI	GRGCYC	1 cut(s)	1101
Fsp4HI	GCNGC	7 cut(s)	25, 28, 31, 34, 89, 531, 1410
FspBI	CTAG	5 cut(s)	122, 615, 917, 1041, 1563
GlaI	GCGC	3 cut(s)	175, 320, 1482
GluI	GCNGC	7 cut(s)	25, 28, 31, 34, 89, 531, 1410
GsuI	CTGGAG	3 cut(s)	495, 1410, 1992
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	8, 940, 1768
HapII	CCGG	4 cut(s)	114, 301, 1202, 1377
HhaI	GCGC	3 cut(s)	176, 321, 1483
Hin6I	GCGC	3 cut(s)	174, 319, 1481
HinP1I	GCGC	3 cut(s)	174, 319, 1481
HincII	GTYRAC	2 cut(s)	501, 727
HindII	GTYRAC	2 cut(s)	501, 727
HinfI	GANTC	7 cut(s)	218, 275, 963, 1055, 1592, 1873, 1979
HpaII	CCGG	4 cut(s)	114, 301, 1202, 1377
HphI	GGTGA	4 cut(s)	800, 872, 1856, 1904
Hpy166II	GTNNAC	6 cut(s)	501, 727, 935, 1331, 1717, 1877
Hpy188I	TCNGA	5 cut(s)	559, 688, 1434, 1681, 1689
Hpy188III	TCNNGA	9 cut(s)	114, 474, 621, 868, 1022, 1052, 1202, 1788, 1966
Hpy8I	GTNNAC	6 cut(s)	501, 727, 935, 1331, 1717, 1877
Hpy99I	CGWCG	2 cut(s)	14, 298
HpyAV	CCTTC	7 cut(s)	249, 390, 693, 709, 779, 1849, 1936
HpyCH4III	ACNGT	4 cut(s)	1005, 1181, 1454, 1804
HpyCH4IV	ACGT	1 cut(s)	1336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 33, 1415, 1478
HpyF3I	CTNAG	1 cut(s)	1700
HpySE526I	ACGT	1 cut(s)	1336
HspAI	GCGC	3 cut(s)	174, 319, 1481
KflI	GGGWCCC	1 cut(s)	1343
Kpn2I	TCCGGA	2 cut(s)	113, 1201
Ksp22I	TGATCA	2 cut(s)	664, 976
LguI	GCTCTTC	1 cut(s)	1240
LmnI	GCTCC	4 cut(s)	476, 1391, 1601, 1973
Lsp1109I	GCAGC	7 cut(s)	11, 14, 17, 20, 75, 517, 1421
LweI	GCATC	5 cut(s)	88, 355, 1375, 1513, 1664
MaeI	CTAG	5 cut(s)	122, 615, 917, 1041, 1563
MaeII	ACGT	1 cut(s)	1336
MaeIII	GTNAC	3 cut(s)	353, 451, 1372
MboII	GAAGA	9 cut(s)	142, 451, 851, 935, 1227, 1394, 1629, 1694, 1986
MfeI	CAATTG	3 cut(s)	629, 825, 1935
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	3 cut(s)	1101, 1333, 1809
MlyI	GAGTC	2 cut(s)	284, 1882
MmeI	TCCRAC	6 cut(s)	40, 155, 267, 573, 794, 1888
MnlI	CCTC	7 cut(s)	148, 203, 337, 1126, 1151, 1552, 1888
Mph1103I	ATGCAT	1 cut(s)	808
MroI	TCCGGA	2 cut(s)	113, 1201
MseI	TTAA	7 cut(s)	162, 582, 797, 1170, 1536, 1707, 1946
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	2 cut(s)	1259, 1549
MspCI	CTTAAG	1 cut(s)	1169
MspI	CCGG	4 cut(s)	114, 301, 1202, 1377
MspR9I	CCNGG	4 cut(s)	256, 408, 768, 849
MunI	CAATTG	3 cut(s)	629, 825, 1935
Mva1269I	GAATGC	1 cut(s)	1501
MvaI	CCWGG	4 cut(s)	256, 408, 768, 849
MwoI	GCNNNNNNNGC	4 cut(s)	30, 33, 1415, 1478
NcoI	CCATGG	1 cut(s)	833
NlaIV	GGNNCC	6 cut(s)	228, 1344, 1345, 1517, 1767, 1953
NmuCI	GTSAC	2 cut(s)	353, 1372
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	2 cut(s)	733, 1303
NspV	TTCGAA	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	858
PasI	CCCWGGG	1 cut(s)	407
PciI	ACATGT	2 cut(s)	729, 1299
PciSI	GCTCTTC	1 cut(s)	1240
PcsI	WCGNNNNNNNCGW	3 cut(s)	302, 1324, 1333
PctI	GAATGC	1 cut(s)	1501
PfeI	GAWTC	5 cut(s)	218, 963, 1055, 1592, 1979
PflFI	GACNNNGTC	1 cut(s)	722
PinAI	ACCGGT	1 cut(s)	300
PkrI	GCNGC	7 cut(s)	26, 29, 32, 35, 90, 532, 1411
PleI	GAGTC	2 cut(s)	283, 1881
PpsI	GAGTC	2 cut(s)	283, 1881
Ppu21I	YACGTR	1 cut(s)	1337
PpuMI	RGGWCCY	3 cut(s)	227, 718, 1343
PscI	ACATGT	2 cut(s)	729, 1299
PsiI	TTATAA	1 cut(s)	402
Psp5II	RGGWCCY	3 cut(s)	227, 718, 1343
Psp6I	CCWGG	4 cut(s)	254, 406, 766, 847
PspGI	CCWGG	4 cut(s)	254, 406, 766, 847
PspN4I	GGNNCC	6 cut(s)	228, 1344, 1345, 1517, 1767, 1953
PspPI	GGNCC	6 cut(s)	227, 298, 718, 830, 1343, 1766
PspPPI	RGGWCCY	3 cut(s)	227, 718, 1343
PstNI	CAGNNNCTG	1 cut(s)	1424
PsuI	RGATCY	1 cut(s)	739
PsyI	GACNNNGTC	1 cut(s)	722
PvuII	CAGCTG	2 cut(s)	1259, 1549
RsaI	GTAC	3 cut(s)	875, 934, 1011
RsaNI	GTAC	3 cut(s)	874, 933, 1010
RseI	CAYNNNNRTG	1 cut(s)	858
Rsr2I	CGGWCCG	1 cut(s)	298
RsrII	CGGWCCG	1 cut(s)	298
SalI	GTCGAC	1 cut(s)	725
SapI	GCTCTTC	1 cut(s)	1240
SaqAI	TTAA	7 cut(s)	162, 582, 797, 1170, 1536, 1707, 1946
SatI	GCNGC	7 cut(s)	25, 28, 31, 34, 89, 531, 1410
Sau96I	GGNCC	6 cut(s)	227, 298, 718, 830, 1343, 1766
SchI	GAGTC	2 cut(s)	284, 1882
ScrFI	CCNGG	4 cut(s)	256, 408, 768, 849
SduI	GDGCHC	3 cut(s)	1101, 1333, 1809
SfaNI	GCATC	5 cut(s)	88, 355, 1375, 1513, 1664
SfcI	CTRYAG	1 cut(s)	1177
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	5 cut(s)	227, 298, 718, 830, 1343
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	2 cut(s)	1108, 1169
SmoI	CTYRAG	2 cut(s)	1108, 1169
SpeI	ACTAGT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	1510
SspMI	CTAG	5 cut(s)	122, 615, 917, 1041, 1563
StyD4I	CCNGG	4 cut(s)	254, 406, 766, 847
StyI	CCWWGG	3 cut(s)	833, 928, 1347
TaaI	ACNGT	4 cut(s)	1005, 1181, 1454, 1804
TaiI	ACGT	1 cut(s)	1339
TaqI	TCGA	6 cut(s)	153, 293, 315, 337, 726, 1307
TatI	WGTACW	2 cut(s)	873, 1009
TfiI	GAWTC	5 cut(s)	218, 963, 1055, 1592, 1979
Tru1I	TTAA	7 cut(s)	162, 582, 797, 1170, 1536, 1707, 1946
Tru9I	TTAA	7 cut(s)	162, 582, 797, 1170, 1536, 1707, 1946
TscAI	CASTG	2 cut(s)	1186, 1459
TseFI	GTSAC	2 cut(s)	353, 1372
TseI	GCWGC	7 cut(s)	24, 27, 30, 33, 88, 530, 1409
Tsp45I	GTSAC	2 cut(s)	353, 1372
TspDTI	ATGAA	4 cut(s)	17, 437, 459, 1265
TspGWI	ACGGA	3 cut(s)	311, 1064, 1739
TspRI	CASTG	2 cut(s)	1186, 1459
Tth111I	GACNNNGTC	1 cut(s)	722
Vha464I	CTTAAG	1 cut(s)	1169
VneI	GTGCAC	1 cut(s)	1329
VpaK11BI	GGWCC	5 cut(s)	227, 298, 718, 830, 1343
XapI	RAATTY	4 cut(s)	144, 578, 1633, 1771
XceI	RCATGY	2 cut(s)	733, 1303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	2 cut(s)	726, 1876
XspI	CTAG	5 cut(s)	122, 615, 917, 1041, 1563
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.