Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004270

Physical Location & Seq

Genomic Coordinates Forward (+)

45596619 .. 45597621

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0372000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAGAAGCTGAGGGCGAACAAGGAAGCTCCATGCATGGAGTCACAGGAAGAGAGCAAACATTTGCATTCTCGGTGGCTTCACCTATTGTCCCAACTGATAACACATCAAAATTTGACTTGCCAATTGATTCTGAGCACAAGGCTAAAGTCTTCAAGATTTTCTCTTTGGCCAATCCTCATATGAGAACCTTCCACCTATCTTGGATCTCCTTCTTCACTTGCTTTGTATCGACTTTCGTTGCTGCTCCCCTCGTCCCTATCATCCGTGACAACCTCAACCTCACCAAGCAAGACATTGGAAATGCTGGAGTTGCTTCTGTTTCAGATGTTGGGGGTTACTTAGCTGTGAGGTTCATGATTGATTTCTCTCTGGCTACATTTGTTTCTTGCCAGTACTGGATGAGCACCCTGTTCAACAGCAAGATCATAGGTTTAGTCAATGGAACAGCAGCAGGGTGGGGTAACATGGGTGGTGGCGCCACTCAGCTCTTGATGCCTCTGGTGAGGAAGGCGGCGTTGGAAGCGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

178

Amino Acids

19.26

Weight (kDa)

6.41

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23310 AT4G14350 AT4G14350 AT4G14350 AT4G14350
fragaria_vesca	FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790
malus_domestica	MD13G1215300.v1.1 MD16G1220500.v1.1
prunus_persica	Prupe.1G040500_v2.0.a1 Prupe.1G040500_v2.0.a1 Prupe.1G040500_v2.0.a1
pyrus_communis	pycom13g18850 pycom16g18470
rosa_chinensis	RchiOBHm_Chr4g0393641
rosa_laevigata	RLG00000009739
rosa_multiflora	Rmu_sc0006302.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338810
rosa_rugosa	Rorug03G0372000 Rorug03G0372100 Rorug03G0372200 Rorug03G0372300.1
rosa_samantha	Rh4AG048200 Rh4BG044700 Rh4CG051500 Rh4DG045500
rosa_wichuraiana	Rw4G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	479
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	157, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	4 cut(s)	11, 30, 347, 490
AluI	AGCT	4 cut(s)	11, 30, 347, 490
Alw21I	GWGCWC	2 cut(s)	141, 410
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	245, 452
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	75, 277, 517
BalI	TGGCCA	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	141, 410
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	232, 464
BfoI	RGCGCY	1 cut(s)	483
BisI	GCNGC	3 cut(s)	246, 453, 516
BlsI	GCNGC	3 cut(s)	247, 454, 517
BmcAI	AGTACT	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	481
BmsI	GCATC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	394, 404
BseGI	GGATG	2 cut(s)	264, 408
BseMII	CTCAG	2 cut(s)	126, 500
BseNI	ACTGG	2 cut(s)	394, 404
BseXI	GCAGC	2 cut(s)	232, 464
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	141, 410
BslFI	GGGAC	2 cut(s)	77, 242
BsmFI	GGGAC	2 cut(s)	77, 242
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	141, 410
Bsp143I	GATC	2 cut(s)	207, 426
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	3 cut(s)	4, 127, 499
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	394, 404
BssMI	GATC	2 cut(s)	207, 426
BssNI	GRCGYC	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	12, 135, 343, 486
BstF5I	GGATG	2 cut(s)	264, 408
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	2 cut(s)	210, 429
BstMBI	GATC	2 cut(s)	207, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 496, 524
BstV1I	GCAGC	2 cut(s)	232, 464
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	264, 408
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	185, 220
CviAII	CATG	4 cut(s)	34, 38, 358, 469
CviJI	RGCY	8 cut(s)	11, 30, 80, 146, 173, 347, 377, 490
CviKI_1	RGCY	8 cut(s)	11, 30, 80, 146, 173, 347, 377, 490
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	4 cut(s)	12, 135, 343, 486
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	2 cut(s)	209, 428
DpnII	GATC	2 cut(s)	207, 426
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
FaeI	CATG	4 cut(s)	37, 41, 361, 472
FaiI	YATR	7 cut(s)	35, 39, 183, 185, 359, 431, 470
FaqI	GGGAC	2 cut(s)	77, 242
FatI	CATG	4 cut(s)	33, 37, 357, 468
FauNDI	CATATG	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	246, 453, 516
FokI	GGATG	2 cut(s)	251, 415
Fsp4HI	GCNGC	3 cut(s)	246, 453, 516
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	3 cut(s)	246, 453, 516
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	4 cut(s)	37, 41, 361, 472
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HinfI	GANTC	2 cut(s)	42, 131
HphI	GGTGA	3 cut(s)	75, 277, 517
Hpy188I	TCNGA	2 cut(s)	136, 328
Hpy188III	TCNNGA	3 cut(s)	157, 358, 493
HpyAV	CCTTC	3 cut(s)	202, 223, 505
HpyCH4V	TGCA	2 cut(s)	37, 68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 496, 524
HpyF3I	CTNAG	4 cut(s)	12, 135, 343, 486
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	37, 41, 361, 472
HspAI	GCGC	1 cut(s)	480
KasI	GGCGCC	1 cut(s)	479
Kzo9I	GATC	2 cut(s)	207, 426
LmnI	GCTCC	2 cut(s)	35, 253
LpnPI	CCDG	8 cut(s)	33, 294, 359, 385, 407, 425, 441, 488
Lsp1109I	GCAGC	2 cut(s)	232, 464
LweI	GCATC	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	43, 269, 338, 464
MalI	GATC	2 cut(s)	209, 428
MboI	GATC	2 cut(s)	207, 426
MboII	GAAGA	3 cut(s)	63, 145, 208
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	141, 410
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	113, 126
MluNI	TGGCCA	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	9 cut(s)	7, 189, 263, 287, 293, 345, 501, 510, 522
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	314, 496, 524
NarI	GGCGCC	1 cut(s)	480
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	2 cut(s)	207, 426
NlaIII	CATG	4 cut(s)	37, 41, 361, 472
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	2 cut(s)	43, 269
NsiI	ATGCAT	1 cut(s)	39
PagI	TCATGA	1 cut(s)	357
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	247, 454, 517
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SatI	GCNGC	3 cut(s)	246, 453, 516
Sau3AI	GATC	2 cut(s)	207, 426
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	141, 410
SfaNI	GCATC	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	481
Sse9I	AATT	2 cut(s)	113, 126
SsiI	CCGC	1 cut(s)	515
SspDI	GGCGCC	1 cut(s)	479
TaqI	TCGA	1 cut(s)	233
TasI	AATT	2 cut(s)	113, 126
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	43, 269
TseI	GCWGC	2 cut(s)	245, 452
Tsp45I	GTSAC	2 cut(s)	43, 269
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	1 cut(s)	257
XapI	RAATTY	1 cut(s)	113
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.