Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004270

Physical Location & Seq

Genomic Coordinates Forward (+)

45610134 .. 45615093

Gene Structure 4960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0372100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGACGAAGCAATCTAAAGCCAAGAAATTGGATAATTTGGGAAAGGGTACCGTCACACCCGTGCAGAACGCCTTCCTCGTCAACCAGTTTCTCTTTGATAACAGCTACACCGAAGCCTGCTTCGTTTTCCGAACTAAAGCCTCCTCACTCTTCTCTACGTCTCCGATTCAAGAGGAAAGTTTGCGATGGGTCGACACGAAGATCCAAAGAGATGTTTCTGTGGATATCAACAAGAAAAGGATAATTGTAACCCCTATTCTGAGATTGGTGTTTTGTATGTTGCCTCTAGTTGCTACATCTGAATTTTACGAGGAAGACACTTTCCAAGCTGTTGAGATGGTGACGGAGCAAATAAACCTGTTGTTGGCTTGGCAAGTAGTGTTTCATCATCTGACAATATACAGAAAAGGTCAGTATGTTGAGCCTTATTCAGATACAGAAGAAGACAAAGCTGCAGCAAAAAGAATTTTAGACTTCGAACTTAGATGGTTTATGGAACCAATAGTATTTGGAGATTATCCAAAGATTATGAGAGATTTGGTCAAGGAAAGGCTACCCCTTTTCACCGAAGAAGAGAAAAAATTGATTAAGGGATCCTTCGATTTCATTGGCATCAACTATTATACCACGAGATATGATGCAAATGGAGTCTTAATTGGTCCTCATGCTGATGGAAGCATCTACATCTTCTCTTATCCACAAGGTCTTCAGAAACTTTTGGAGTTCATGAAGCAAAACTACCAAAGTCCTAAAATCTACATTTCTGAAAATGGAATTACAGAAGAAAAGGACGATAATCTTGGACTAGATGTAGCAGTCAAGGATCCACATAGAATTGAATGCATTCTTCGACACTTGTACCGGATCAGGATGGCAATGAAGAATGGGGTGAATGTCAAAGGATATTTCCACTGGGCTCTATTCGATGACTTTGAGTGGGGGGAAGGCTATCTTGCAAGTTCGGACTTTACTATGTCGACTACAAAGACAATCTCAAGCGCATTCCTAAAGAATCTGCTGAGTGGCTACCAAATTTCTTGGTTAGGATGTCATATATGGTATGTGGAAGCGACACGGCTGGGTTTTAGGAAGTGGTTTTCTTGTGCTTTTAAGGCTATGGATTCATTTGAGCCTGATGGAAATGGGACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAAACAGGGCAGATGGAAACGGGGCAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCATGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAAATTGTGCGCCTACCAATTGCTACGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCTAATAGATTTAAATCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

467

Amino Acids

53.19

Weight (kDa)

5.93

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	134 - 317	2.3e-40	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23310 AT4G14350 AT4G14350 AT4G14350 AT4G14350
fragaria_vesca	FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790
malus_domestica	MD13G1215300.v1.1 MD16G1220500.v1.1
prunus_persica	Prupe.1G040500_v2.0.a1 Prupe.1G040500_v2.0.a1 Prupe.1G040500_v2.0.a1
pyrus_communis	pycom13g18850 pycom16g18470
rosa_chinensis	RchiOBHm_Chr4g0393641
rosa_laevigata	RLG00000009739
rosa_multiflora	Rmu_sc0006302.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338810
rosa_rugosa	Rorug03G0372000 Rorug03G0372100 Rorug03G0372200 Rorug03G0372300.1
rosa_samantha	Rh4AG048200 Rh4BG044700 Rh4CG051500 Rh4DG045500
rosa_wichuraiana	Rw4G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	2 cut(s)	192, 977
AccII	CGCG	1 cut(s)	1348
AclWI	GGATC	7 cut(s)	196, 588, 601, 818, 831, 872, 1162
AcsI	RAATTY	3 cut(s)	302, 465, 1032
AcuI	CTGAAG	1 cut(s)	692
AfaI	GTAC	2 cut(s)	49, 860
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	170, 839
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	3 cut(s)	105, 329, 452
AluI	AGCT	3 cut(s)	105, 329, 452
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	7 cut(s)	196, 588, 601, 818, 831, 872, 1162
AoxI	GGCC	1 cut(s)	1351
ApeKI	GCWGC	2 cut(s)	452, 455
ApoI	RAATTY	3 cut(s)	302, 465, 1032
Asp700I	GAANNNNTTC	2 cut(s)	71, 843
Asp718I	GGTACC	1 cut(s)	47
AspLEI	GCGC	3 cut(s)	1001, 1175, 1332
AspS9I	GGNCC	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	352, 556, 901
AsuII	TTCGAA	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	659
BaeI	ACNNNNGTAYC	2 cut(s)	842, 875
BamHI	GGATCC	2 cut(s)	593, 823
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	919
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BauI	CACGAG	1 cut(s)	628
BbsI	GAAGAC	3 cut(s)	321, 450, 698
BbvI	GCAGC	2 cut(s)	439, 467
BccI	CCATC	7 cut(s)	180, 331, 480, 665, 865, 1130, 1208
BceAI	ACGGC	1 cut(s)	1091
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	287, 806
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	453, 456
BlsI	GCNGC	2 cut(s)	454, 457
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	4 cut(s)	49, 498, 595, 825
BmrI	ACTGGG	1 cut(s)	922
BmsI	GCATC	3 cut(s)	621, 628, 687
BmuI	ACTGGG	1 cut(s)	922
BpiI	GAAGAC	3 cut(s)	321, 450, 698
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	979, 1272
BsaBI	GATNNNNATC	1 cut(s)	1389
BsaJI	CCNNGG	1 cut(s)	1354
BsaWI	WCCGGW	1 cut(s)	861
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	85, 917
Bse3DI	GCAATG	3 cut(s)	882, 1235, 1277
Bse8I	GATNNNNATC	1 cut(s)	1389
BseDI	CCNNGG	1 cut(s)	1354
BseGI	GGATG	2 cut(s)	876, 1052
BseJI	GATNNNNATC	1 cut(s)	1389
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	3 cut(s)	882, 1235, 1277
BseMII	CTCAG	2 cut(s)	251, 1010
BseNI	ACTGG	2 cut(s)	85, 917
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	439, 467
BseYI	CCCAGC	1 cut(s)	1078
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	1348
BshFI	GGCC	1 cut(s)	1353
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	862
BslFI	GGGAC	1 cut(s)	1159
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	1159
BsmI	GAATGC	3 cut(s)	843, 845, 1001
BsnI	GGCC	1 cut(s)	1353
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp143I	GATC	5 cut(s)	201, 593, 823, 864, 1154
BspANI	GGCC	1 cut(s)	1353
BspCNI	CTCAG	2 cut(s)	252, 1011
BspFNI	CGCG	1 cut(s)	1348
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	4 cut(s)	49, 498, 595, 825
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	7 cut(s)	196, 588, 601, 818, 831, 872, 1162
BspT104I	TTCGAA	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	882, 1235, 1277
BsrI	ACTGG	2 cut(s)	85, 917
BssECI	CCNNGG	1 cut(s)	1354
BssMI	GATC	5 cut(s)	201, 593, 823, 864, 1154
BssSI	CACGAG	1 cut(s)	628
BssT1I	CCWWGG	1 cut(s)	1354
Bst2BI	CACGAG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	155, 567
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	118, 1284
BstDEI	CTNAG	3 cut(s)	260, 482, 1019
BstF5I	GGATG	2 cut(s)	876, 1052
BstFNI	CGCG	1 cut(s)	1348
BstHHI	GCGC	3 cut(s)	1001, 1175, 1332
BstKTI	GATC	5 cut(s)	204, 596, 826, 867, 1157
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	201, 593, 823, 864, 1154
BstMWI	GCNNNNNNNGC	2 cut(s)	1112, 1232
BstNSI	RCATGY	2 cut(s)	1235, 1286
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	1348
BstV1I	GCAGC	2 cut(s)	439, 467
BstV2I	GAAGAC	3 cut(s)	321, 450, 698
BstX2I	RGATCY	3 cut(s)	201, 593, 823
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	3 cut(s)	201, 593, 823
BsuRI	GGCC	1 cut(s)	1353
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	876, 1052
BtsIMutI	CAGTG	1 cut(s)	910
Cac8I	GCNNGC	2 cut(s)	118, 1284
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	3 cut(s)	1001, 1175, 1332
Cfr13I	GGNCC	1 cut(s)	659
CseI	GACGC	1 cut(s)	1199
Csp6I	GTAC	2 cut(s)	48, 859
CviAII	CATG	4 cut(s)	665, 727, 1232, 1283
CviQI	GTAC	2 cut(s)	48, 859
DdeI	CTNAG	3 cut(s)	260, 482, 1019
DpnI	GATC	5 cut(s)	203, 595, 825, 866, 1156
DpnII	GATC	5 cut(s)	201, 593, 823, 864, 1154
DraI	TTTAAA	2 cut(s)	1314, 1389
Eam1104I	CTCTTC	2 cut(s)	155, 567
EarI	CTCTTC	2 cut(s)	155, 567
Eco130I	CCWWGG	1 cut(s)	1354
Eco147I	AGGCCT	1 cut(s)	1353
Eco24I	GRGCYC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	692
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	1354
EcoT22I	ATGCAT	2 cut(s)	845, 1237
EcoT38I	GRGCYC	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	1354
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	4 cut(s)	668, 730, 1235, 1286
FalI	AAGNNNNNCTT	4 cut(s)	581, 613, 936, 968
FaqI	GGGAC	1 cut(s)	1159
FatI	CATG	4 cut(s)	664, 726, 1231, 1282
FblI	GTMKAC	2 cut(s)	192, 977
Fnu4HI	GCNGC	2 cut(s)	453, 456
FokI	GGATG	2 cut(s)	883, 1059
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	2 cut(s)	453, 456
FspBI	CTAG	2 cut(s)	287, 806
GlaI	GCGC	3 cut(s)	1000, 1174, 1331
GluI	GCNGC	2 cut(s)	453, 456
GsaI	CCCAGC	1 cut(s)	1082
HaeIII	GGCC	1 cut(s)	1353
HapII	CCGG	1 cut(s)	862
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	3 cut(s)	1001, 1175, 1332
Hin1II	CATG	4 cut(s)	668, 730, 1235, 1286
Hin6I	GCGC	3 cut(s)	999, 1173, 1330
HinP1I	GCGC	3 cut(s)	999, 1173, 1330
HincII	GTYRAC	3 cut(s)	82, 193, 978
HindII	GTYRAC	3 cut(s)	82, 193, 978
HinfI	GANTC	5 cut(s)	166, 648, 1012, 1121, 1375
HpaII	CCGG	1 cut(s)	862
HphI	GGTGA	3 cut(s)	352, 556, 901
Hpy166II	GTNNAC	3 cut(s)	82, 193, 978
Hpy188I	TCNGA	9 cut(s)	131, 165, 261, 301, 393, 433, 711, 766, 964
Hpy188III	TCNNGA	3 cut(s)	170, 727, 868
Hpy8I	GTNNAC	3 cut(s)	82, 193, 978
Hpy99I	CGWCG	1 cut(s)	1193
HpyAV	CCTTC	3 cut(s)	82, 607, 938
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	7 cut(s)	64, 455, 641, 843, 956, 1235, 1282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1112, 1232
HpyF3I	CTNAG	3 cut(s)	260, 482, 1019
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	668, 730, 1235, 1286
HspAI	GCGC	3 cut(s)	999, 1173, 1330
KpnI	GGTACC	1 cut(s)	51
Kzo9I	GATC	5 cut(s)	201, 593, 823, 864, 1154
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	439, 467
LweI	GCATC	3 cut(s)	621, 628, 687
MaeI	CTAG	2 cut(s)	287, 806
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	52, 247, 340
MalI	GATC	5 cut(s)	203, 595, 825, 866, 1156
MboI	GATC	5 cut(s)	201, 593, 823, 864, 1154
MfeI	CAATTG	1 cut(s)	1338
MflI	RGATCY	3 cut(s)	201, 593, 823
MhlI	GDGCHC	1 cut(s)	919
MlyI	GAGTC	1 cut(s)	657
MnlI	CCTC	8 cut(s)	86, 151, 154, 166, 294, 304, 672, 1343
Mph1103I	ATGCAT	2 cut(s)	845, 1237
MroXI	GAANNNNTTC	2 cut(s)	71, 843
MseI	TTAA	5 cut(s)	588, 653, 1110, 1313, 1388
MslI	CAYNNNNRTG	2 cut(s)	59, 669
MspI	CCGG	1 cut(s)	862
MunI	CAATTG	1 cut(s)	1338
Mva1269I	GAATGC	3 cut(s)	843, 845, 1001
MvnI	CGCG	1 cut(s)	1348
MwoI	GCNNNNNNNGC	2 cut(s)	1112, 1232
NdeII	GATC	5 cut(s)	201, 593, 823, 864, 1154
NlaIII	CATG	4 cut(s)	668, 730, 1235, 1286
NlaIV	GGNNCC	4 cut(s)	49, 498, 595, 825
NmuCI	GTSAC	2 cut(s)	52, 340
NsiI	ATGCAT	2 cut(s)	845, 1237
NspI	RCATGY	2 cut(s)	1235, 1286
NspV	TTCGAA	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	1286
PagI	TCATGA	1 cut(s)	726
PceI	AGGCCT	1 cut(s)	1353
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	3 cut(s)	843, 845, 1001
PdmI	GAANNNNTTC	2 cut(s)	71, 843
PfeI	GAWTC	4 cut(s)	166, 1012, 1121, 1375
PkrI	GCNGC	2 cut(s)	454, 457
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PspFI	CCCAGC	1 cut(s)	1078
PspN4I	GGNNCC	4 cut(s)	49, 498, 595, 825
PspPI	GGNCC	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	3 cut(s)	201, 593, 823
RsaI	GTAC	2 cut(s)	49, 860
RsaNI	GTAC	2 cut(s)	48, 859
RseI	CAYNNNNRTG	2 cut(s)	59, 669
SalI	GTCGAC	2 cut(s)	191, 976
SaqAI	TTAA	5 cut(s)	588, 653, 1110, 1313, 1388
SatI	GCNGC	2 cut(s)	453, 456
Sau3AI	GATC	5 cut(s)	201, 593, 823, 864, 1154
Sau96I	GGNCC	1 cut(s)	659
SchI	GAGTC	1 cut(s)	657
SduI	GDGCHC	1 cut(s)	919
SetI	ASST	9 cut(s)	107, 161, 331, 360, 412, 454, 706, 1306, 1312
SfaNI	GCATC	3 cut(s)	621, 628, 687
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	477
SinI	GGWCC	1 cut(s)	659
SmiI	ATTTAAAT	1 cut(s)	1389
SmiMI	CAYNNNNRTG	2 cut(s)	59, 669
SmlI	CTYRAG	2 cut(s)	994, 1287
SmoI	CTYRAG	2 cut(s)	994, 1287
SphI	GCATGC	1 cut(s)	1286
SseBI	AGGCCT	1 cut(s)	1353
SspMI	CTAG	2 cut(s)	287, 806
StuI	AGGCCT	1 cut(s)	1353
StyI	CCWWGG	1 cut(s)	1354
SwaI	ATTTAAAT	1 cut(s)	1389
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	6 cut(s)	192, 477, 600, 850, 924, 977
TfiI	GAWTC	4 cut(s)	166, 1012, 1121, 1375
Tru1I	TTAA	5 cut(s)	588, 653, 1110, 1313, 1388
Tru9I	TTAA	5 cut(s)	588, 653, 1110, 1313, 1388
TscAI	CASTG	1 cut(s)	917
TseFI	GTSAC	2 cut(s)	52, 340
TseI	GCWGC	2 cut(s)	452, 455
Tsp45I	GTSAC	2 cut(s)	52, 340
TspDTI	ATGAA	6 cut(s)	374, 595, 715, 743, 893, 1113
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	917
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	3 cut(s)	302, 465, 1032
XceI	RCATGY	2 cut(s)	1235, 1286
XmiI	GTMKAC	2 cut(s)	192, 977
XmnI	GAANNNNTTC	2 cut(s)	71, 843
XspI	CTAG	2 cut(s)	287, 806
Zsp2I	ATGCAT	2 cut(s)	845, 1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.