Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004270

Physical Location & Seq

Genomic Coordinates Forward (+)

45622510 .. 45623276

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0372200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGCCCTTATCCCTATTGCGCGCCACCATTCCCCTCTAAGAAACGTCGAACCCAATTCGAGCCGAATCCAAATCCTACAGTTCTCATCCTCGACGACGACCCGACCCCGCAGAAACCCGGCCCCAAATCCACGGCCTACTTGGTCCCGGACACCCCGAATTCCGATATTGCAATCGTGAAATGCACAAGGGCTTCCCAGCACAAGTTATCTGGCATCAATGGATTGATATGTTTGGAATCCGATAATGAGCCCGGAAGTAGTTGTGGAGGGGAAAAGAAGAAGGGAAATGGATCAATGCTGGGTGGTTTTGGTCTGGCCAAGGACCATATAGAGGAAGATGAGAAATCAATTGTTATGCGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

122

Amino Acids

13.21

Weight (kDa)

7.65

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23310 AT4G14350 AT4G14350 AT4G14350 AT4G14350
fragaria_vesca	FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790 FvH4_4g03790
malus_domestica	MD13G1215300.v1.1 MD16G1220500.v1.1
prunus_persica	Prupe.1G040500_v2.0.a1 Prupe.1G040500_v2.0.a1 Prupe.1G040500_v2.0.a1
pyrus_communis	pycom13g18850 pycom16g18470
rosa_chinensis	RchiOBHm_Chr4g0393641
rosa_laevigata	RLG00000009739
rosa_multiflora	Rmu_sc0006302.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338810
rosa_rugosa	Rorug03G0372000 Rorug03G0372100 Rorug03G0372200 Rorug03G0372300.1
rosa_samantha	Rh4AG048200 Rh4BG044700 Rh4CG051500 Rh4DG045500
rosa_wichuraiana	Rw4G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	3 cut(s)	121, 135, 318
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	3 cut(s)	6, 23, 25
AspS9I	GGNCC	3 cut(s)	122, 145, 325
AsuC2I	CCSGG	3 cut(s)	120, 149, 255
AvaII	GGWCC	2 cut(s)	145, 325
BalI	TGGCCA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	150
BcnI	CCSGG	3 cut(s)	120, 149, 255
BfmI	CTRYAG	1 cut(s)	78
Bme1390I	CCNGG	3 cut(s)	120, 149, 255
Bme18I	GGWCC	2 cut(s)	145, 325
BmgT120I	GGNCC	3 cut(s)	122, 145, 325
BmiI	GGNNCC	2 cut(s)	124, 147
BmrFI	CCNGG	3 cut(s)	120, 149, 255
BmsI	GCATC	1 cut(s)	225
BpuMI	CCSGG	3 cut(s)	120, 149, 255
BsaJI	CCNNGG	2 cut(s)	132, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	132, 321
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	334
BsePI	GCGCGC	1 cut(s)	21
BseYI	CCCAGC	2 cut(s)	198, 301
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	3 cut(s)	123, 137, 320
BsiSI	CCGG	3 cut(s)	120, 149, 255
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	123, 137, 320
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	123, 137, 320
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	124, 147
BspPI	GGATC	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	132, 321
BssHII	GCGCGC	1 cut(s)	21
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	6, 23, 25
BstKTI	GATC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	118, 147, 253
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	123, 137, 320
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	3 cut(s)	6, 23, 25
Cfr13I	GGNCC	3 cut(s)	122, 145, 325
CviJI	RGCY	7 cut(s)	64, 123, 137, 194, 253, 320, 366
CviKI_1	RGCY	7 cut(s)	64, 123, 137, 194, 253, 320, 366
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	145, 325
EcoRI	GAATTC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	321
FaiI	YATR	4 cut(s)	232, 330, 332, 359
FaqI	GGGAC	1 cut(s)	131
FauI	CCCGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	255
GlaI	GCGC	3 cut(s)	5, 22, 24
GsaI	CCCAGC	2 cut(s)	202, 305
HaeIII	GGCC	3 cut(s)	123, 137, 320
HapII	CCGG	3 cut(s)	120, 149, 255
HhaI	GCGC	3 cut(s)	6, 23, 25
Hin6I	GCGC	3 cut(s)	4, 21, 23
HinP1I	GCGC	3 cut(s)	4, 21, 23
HinfI	GANTC	2 cut(s)	67, 239
HpaII	CCGG	3 cut(s)	120, 149, 255
Hpy188I	TCNGA	2 cut(s)	166, 244
Hpy188III	TCNNGA	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	51, 98, 101
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	173, 186
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	46
HspAI	GCGC	3 cut(s)	4, 21, 23
Kzo9I	GATC	1 cut(s)	293
LpnPI	CCDG	7 cut(s)	133, 162, 198, 212, 268, 287, 302
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	46
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	2 cut(s)	292, 350
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	3 cut(s)	56, 160, 351
MluNI	TGGCCA	1 cut(s)	320
MnlI	CCTC	4 cut(s)	46, 101, 263, 328
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	3 cut(s)	120, 149, 255
MspR9I	CCNGG	3 cut(s)	120, 149, 255
MunI	CAATTG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	23
NciI	CCSGG	3 cut(s)	120, 149, 255
NdeII	GATC	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	124, 147
PauI	GCGCGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	67, 239
PfoI	TCCNGGA	1 cut(s)	147
PspFI	CCCAGC	2 cut(s)	198, 301
PspN4I	GGNNCC	2 cut(s)	124, 147
PspPI	GGNCC	3 cut(s)	122, 145, 325
PteI	GCGCGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	3 cut(s)	122, 145, 325
ScrFI	CCNGG	3 cut(s)	120, 149, 255
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	2 cut(s)	49, 368
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	145, 325
Sse9I	AATT	3 cut(s)	56, 160, 351
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	118, 147, 253
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	49, 60, 93
TasI	AATT	3 cut(s)	56, 160, 351
TfiI	GAWTC	2 cut(s)	67, 239
VpaK11BI	GGWCC	2 cut(s)	145, 325
XapI	RAATTY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.