Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007252

Physical Location & Seq

Genomic Coordinates Reverse (-)

6242164 .. 6244979

Gene Structure 2816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACGAAAAGACGATTTTGCCCCTGCGTGCTGTTTCTTCCTGGGTTGTTGCTCAGTGCGTGTTTGTTTCTTGCTCCGACACCTGGGGTGTTGGTCAGTGCTGTGGTGTCTACATTACTTCACTCCACAGAGAGTTAGATAGTGAAGGAAGTGGTGCTGAGAATTGCGCAACCGATTTGCGGATTCCTGGGTGCGTGATTGATTTGGGCGAGGAGAGGGAAGGCGATTCTGGAGGAAACGGGAGAGAGAGAGAGAGAGATCGCTCGCGAAAGGAATATATATCGGCCTTAACCAAAGACTCCGCTGCTTCACCAGAGTGTCAAGCCGGTTGGTGGAAATCACGTTTTCGTCCTTATTTTGTGATAAGGACGACACCGACGTCGTCTAACTCGACTCTTCCAGACTATCATCATCTGCACTCCTTTTTTCGCTCTCCCAAACCTGATACACCAGAATTGATATCATCCCAAACAATTATCATCCCAAAATCTTTTTCAAATCCATCAATCGTATCTTACCGGACCAACAAAATTAACTCTCCCCAAATCTCTGTCCTCAAGATCAAAAATAAAGGAGCTTCAAATTCTTTGCTGATTCATAAGGGGAAGAACGTAGATAGCTCAGAGAAAAGGAAGAGGGGGACGGGAAGCAGTCAAAATCGGTTTTCTAAGTTCTATACAAAGAAGTGTGTGCATTATTCTTCTGCCGCTGTTCCTGTGTACATTGTTTGGCATTATCTCAGTTTCTTATTCCTATTCAGATATTCAGGACAGCGTGCTGTCAACTTCTTTAGCTGTTTTGGGTTCAAATATAAATTTTTCAGTTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

277

Amino Acids

31.37

Weight (kDa)

9.42

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57580
fragaria_vesca	FvH4_4g09180 FvH4_4g09180 FvH4_4g09180 FvH4_4g09180
malus_domestica	MD13G1267400.v1.1 MD16G1267100.v1.1
prunus_persica	Prupe.1G089100_v2.0.a1 Prupe.1G089100_v2.0.a1 Prupe.1G089100_v2.0.a1 Prupe.1G089100_v2.0.a1 Prupe.1G089100_v2.0.a1 Prupe.1G089100_v2.0.a1
pyrus_communis	pycom13g22770 pycom16g23620
rosa_chinensis	RchiOBHm_Chr4g0403041
rosa_laevigata	RLG00000009029
rosa_multiflora	Rmu_sc0001023.1_g000023
rosa_roxburghii	Rroxscaffold_5G00347730
rosa_rugosa	Rorug04G0040300
rosa_samantha	Rh4AG117600 Rh4BG110100 Rh4CG124400 Rh4DG109500
rosa_wichuraiana	Rw4G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	379
AatII	GACGTC	1 cut(s)	383
Acc16I	TGCGCA	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	268
AciI	CCGC	3 cut(s)	181, 303, 708
AcsI	RAATTY	2 cut(s)	583, 815
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	3 cut(s)	84, 180, 333
AgsI	TTSAA	3 cut(s)	498, 582, 808
AjnI	CCWGG	3 cut(s)	41, 83, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	3 cut(s)	578, 621, 795
AluI	AGCT	3 cut(s)	578, 621, 795
AlwNI	CAGNNNCTG	1 cut(s)	828
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	583, 815
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	3 cut(s)	43, 85, 189
BisI	GCNGC	2 cut(s)	306, 708
BlsI	GCNGC	2 cut(s)	307, 709
Bme1390I	CCNGG	3 cut(s)	43, 85, 189
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmrFI	CCNGG	3 cut(s)	43, 85, 189
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	42, 84, 188
BsaWI	WCCGGW	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 180, 333
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	833
BseBI	CCWGG	3 cut(s)	43, 85, 189
BseDI	CCNNGG	3 cut(s)	42, 84, 188
BseGI	GGATG	2 cut(s)	464, 480
BseLI	CCNNNNNNNGG	3 cut(s)	84, 180, 333
BseMII	CTCAG	4 cut(s)	68, 150, 636, 754
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	327, 520
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	3 cut(s)	84, 180, 333
BsmFI	GGGAC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	2 cut(s)	259, 561
Bsp68I	TCGCGA	1 cut(s)	268
BspACI	CCGC	3 cut(s)	181, 303, 708
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	4 cut(s)	67, 151, 635, 753
BspFNI	CGCG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	833
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	42, 84, 188
BssMI	GATC	2 cut(s)	259, 561
BssNI	GRCGYC	1 cut(s)	380
Bst2UI	CCWGG	3 cut(s)	43, 85, 189
Bst6I	CTCTTC	2 cut(s)	402, 629
BstACI	GRCGYC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	30, 266, 777
BstDEI	CTNAG	5 cut(s)	54, 159, 622, 669, 740
BstF5I	GGATG	2 cut(s)	464, 480
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	262, 564
BstMBI	GATC	2 cut(s)	259, 561
BstNI	CCWGG	3 cut(s)	43, 85, 189
BstSCI	CCNGG	3 cut(s)	41, 83, 187
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	464, 480
BtsIMutI	CAGTG	2 cut(s)	62, 104
BtuMI	TCGCGA	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	30, 266, 777
CaiI	CAGNNNCTG	1 cut(s)	828
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	721
CviJI	RGCY	5 cut(s)	287, 326, 578, 621, 795
CviKI_1	RGCY	5 cut(s)	287, 326, 578, 621, 795
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	5 cut(s)	54, 159, 622, 669, 740
DpnI	GATC	2 cut(s)	261, 563
DpnII	GATC	2 cut(s)	259, 561
DrdI	GACNNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	402, 629
EarI	CTCTTC	2 cut(s)	402, 629
Eco32I	GATATC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	522
EcoRII	CCWGG	3 cut(s)	41, 83, 187
EcoRV	GATATC	1 cut(s)	462
FaiI	YATR	5 cut(s)	279, 281, 600, 678, 813
FaqI	GGGAC	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	306, 708
FokI	GGATG	2 cut(s)	451, 467
Fsp4HI	GCNGC	2 cut(s)	306, 708
FspI	TGCGCA	1 cut(s)	169
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	306, 708
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	327, 520
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HinfI	GANTC	5 cut(s)	184, 227, 299, 394, 595
HpaII	CCGG	2 cut(s)	327, 520
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	3 cut(s)	112, 721, 784
Hpy188I	TCNGA	3 cut(s)	79, 625, 761
Hpy188III	TCNNGA	5 cut(s)	231, 267, 401, 559, 768
Hpy8I	GTNNAC	3 cut(s)	112, 721, 784
Hpy99I	CGWCG	2 cut(s)	382, 385
HpyAV	CCTTC	2 cut(s)	140, 215
HpyCH4IV	ACGT	3 cut(s)	343, 380, 612
HpyCH4V	TGCA	2 cut(s)	418, 694
HpyF3I	CTNAG	5 cut(s)	54, 159, 622, 669, 740
HpySE526I	ACGT	3 cut(s)	343, 380, 612
Hsp92I	GRCGYC	1 cut(s)	380
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	259, 561
LmnI	GCTCC	2 cut(s)	80, 575
Lsp1109I	GCAGC	1 cut(s)	292
MaeII	ACGT	3 cut(s)	343, 380, 612
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	2 cut(s)	261, 563
MboI	GATC	2 cut(s)	259, 561
MboII	GAAGA	5 cut(s)	30, 389, 619, 646, 693
MluCI	AATT	6 cut(s)	163, 455, 474, 531, 583, 815
MlyI	GAGTC	2 cut(s)	293, 388
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	205, 210, 227, 566, 630
MseI	TTAA	2 cut(s)	290, 534
MslI	CAYNNNNRTG	1 cut(s)	316
MspA1I	CMGCKG	2 cut(s)	305, 710
MspI	CCGG	2 cut(s)	327, 520
MspR9I	CCNGG	3 cut(s)	43, 85, 189
MvaI	CCWGG	3 cut(s)	43, 85, 189
MvnI	CGCG	1 cut(s)	268
NdeII	GATC	2 cut(s)	259, 561
NruI	TCGCGA	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	377, 389
PfeI	GAWTC	3 cut(s)	184, 227, 595
PflFI	GACNNNGTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	307, 709
PleI	GAGTC	2 cut(s)	293, 388
PpsI	GAGTC	2 cut(s)	293, 388
Psp6I	CCWGG	3 cut(s)	41, 83, 187
PspGI	CCWGG	3 cut(s)	41, 83, 187
PspPI	GGNCC	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	828
PsyI	GACNNNGTC	1 cut(s)	382
RruI	TCGCGA	1 cut(s)	268
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	290, 534
SatI	GCNGC	2 cut(s)	306, 708
Sau3AI	GATC	2 cut(s)	259, 561
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	2 cut(s)	293, 388
ScrFI	CCNGG	3 cut(s)	43, 85, 189
SetI	ASST	8 cut(s)	86, 346, 383, 445, 580, 615, 623, 797
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	6 cut(s)	163, 455, 474, 531, 583, 815
SsiI	CCGC	3 cut(s)	181, 303, 708
StyD4I	CCNGG	3 cut(s)	41, 83, 187
TaiI	ACGT	3 cut(s)	346, 383, 615
TaqI	TCGA	1 cut(s)	392
TasI	AATT	6 cut(s)	163, 455, 474, 531, 583, 815
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	3 cut(s)	184, 227, 595
Tru1I	TTAA	2 cut(s)	290, 534
Tru9I	TTAA	2 cut(s)	290, 534
TscAI	CASTG	2 cut(s)	62, 104
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	587
TspRI	CASTG	2 cut(s)	62, 104
Tth111I	GACNNNGTC	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	583, 815
XmiI	GTMKAC	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.