Rorug04G0120900

Adenosylhomocysteinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009985
Physical Location & Seq
Forward (+)
19155434 .. 19155988
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0120900.1

Sequence Viewer

Length: 453 bp
ATGAACCAGGCCATGTTAGCCAAGGCTAGTTGGAGAATTTTTCAAGGTGACAATGGTCTCTGGAATTCCATTTATAAGTATAAATACCTAGCGAATGCCAATATTACTAGTATTGACTATTCTCCTCCTTCTGGGAGCTCAAGCACGTGGAGGAGCATTGCTCATGGAGCCTCTCTTCTAAGGCAAGCTAACATTGATGATACTATTAGTATCTTTTGGAACAACAATGGATGGGACATTGATAAATTACAAATTTGTTTGCCTGAGACATTTATTCAACAGACCTTAAGCATTCCTCTTAGGTTTAAGGGATGTGGCCCTGATATTCAAATATGGGGATATACTTCTAATGGTCGCTTTACTGTTAAATCGGCCAACAATAGCCTTTTTGATATGTCTGAGTCCAATCTTTTCAAGTGGAATTTCATCTGGTATCTTAATATCTCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 map00270 map01100
Pfam Domains
Protein Families
AdoHcyase AdoHcyase_NAD

Protein Analysis

150

Amino Acids

17.19

Weight (kDa)

8.58

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23810 AT4G13940 AT4G13940 AT4G13940 AT4G13940
fragaria_vesca FvH4_4g13280
malus_domestica MD05G1230000.v1.1 MD13G1281900.v1.1
prunus_persica Prupe.1G165200_v2.0.a1
pyrus_communis pycom420g00960 pycom420g00980
rosa_chinensis RchiOBHm_Chr4g0413571
rosa_laevigata RLG00000008212
rosa_multiflora Rmu_sc0000883.1_g000001
rosa_roxburghii Rroxscaffold_5G00357440
rosa_rugosa Rorug04G0120900
rosa_samantha Rh4AG180700 Rh4BG179900 Rh4CG191800 Rh4DG175800
rosa_wichuraiana Rw4G015090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 4 cut(s) 36, 64, 252, 421
AcvI CACGTG 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 131
AflII CTTAAG 1 cut(s) 286
AgsI TTSAA 4 cut(s) 44, 278, 329, 415
AhlI ACTAGT 1 cut(s) 107
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 138, 188
AluI AGCT 2 cut(s) 138, 188
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 62, 260
AoxI GGCC 3 cut(s) 9, 316, 372
ApoI RAATTY 4 cut(s) 36, 64, 252, 421
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 62, 260
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 3 cut(s) 27, 89, 108
BfrI CTTAAG 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 8
BoxI GACNNNNGTC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BpuEI CTTGAG 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 236, 317
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 255, 390
BseRI GAGGAG 2 cut(s) 114, 166
BshFI GGCC 3 cut(s) 11, 318, 374
BsiHKAI GWGCWC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 62, 260
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 100, 291
BsnI GGCC 3 cut(s) 11, 318, 374
Bso31I GGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 140
BspANI GGCC 3 cut(s) 11, 318, 374
BspCNI CTCAG 2 cut(s) 256, 391
BspLI GGNNCC 1 cut(s) 169
BspTI CTTAAG 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 286
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 4 cut(s) 179, 264, 299, 399
BstF5I GGATG 2 cut(s) 236, 317
BstMAI GTCTC 2 cut(s) 62, 260
BstMWI GCNNNNNNNGC 2 cut(s) 17, 167
BstNI CCWGG 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 11, 318, 374
BtsCI GGATG 2 cut(s) 236, 317
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 2 cut(s) 13, 164
CviJI RGCY 9 cut(s) 11, 20, 26, 138, 170, 188, 318, 374, 384
CviKI_1 RGCY 9 cut(s) 11, 20, 26, 138, 170, 188, 318, 374, 384
DdeI CTNAG 4 cut(s) 179, 264, 299, 399
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 16, 167
FaiI YATR 7 cut(s) 14, 75, 81, 165, 334, 342, 395
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 12, 163
FokI GGATG 2 cut(s) 243, 324
FriOI GRGCYC 1 cut(s) 140
FspBI CTAG 3 cut(s) 27, 89, 108
HaeIII GGCC 3 cut(s) 11, 318, 374
Hin1II CATG 2 cut(s) 16, 167
HinfI GANTC 1 cut(s) 401
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 167
HpyF3I CTNAG 4 cut(s) 179, 264, 299, 399
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 2 cut(s) 16, 167
LmnI GCTCC 3 cut(s) 135, 153, 167
LpnPI CCDG 6 cut(s) 20, 46, 117, 276, 333, 415
MaeI CTAG 3 cut(s) 27, 89, 108
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 5 cut(s) 36, 64, 245, 252, 421
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 4 cut(s) 135, 144, 181, 306
MseI TTAA 4 cut(s) 287, 306, 366, 438
MspCI CTTAAG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 8
Mva1269I GAATGC 2 cut(s) 100, 291
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 17, 167
NlaIII CATG 2 cut(s) 16, 167
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 47
PctI GAATGC 2 cut(s) 100, 291
PleI GAGTC 1 cut(s) 409
PmaCI CACGTG 1 cut(s) 147
PmlI CACGTG 1 cut(s) 147
PpsI GAGTC 1 cut(s) 409
Ppu21I YACGTR 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 54
PsiI TTATAA 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 6
PspCI CACGTG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 317
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 287, 306, 366, 438
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 140
SetI ASST 7 cut(s) 49, 90, 140, 149, 190, 287, 305
SmlI CTYRAG 2 cut(s) 139, 286
SmoI CTYRAG 2 cut(s) 139, 286
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 5 cut(s) 36, 64, 245, 252, 421
SspI AATATT 1 cut(s) 103
SspMI CTAG 3 cut(s) 27, 89, 108
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 149
TasI AATT 5 cut(s) 36, 64, 245, 252, 421
Tru1I TTAA 4 cut(s) 287, 306, 366, 438
Tru9I TTAA 4 cut(s) 287, 306, 366, 438
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 17, 415
Vha464I CTTAAG 1 cut(s) 286
XapI RAATTY 4 cut(s) 36, 64, 252, 421
XspI CTAG 3 cut(s) 27, 89, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.