Rorug04G0126600

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011248
Physical Location & Seq
Forward (+)
20097633 .. 20098968
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0126600.1

Sequence Viewer

Length: 1071 bp
ATGATAGTTTTAACAGAAGATAGTGAGAGGAATAGTCTTTGGATTTTCTTGAAGCCGCTAAGCTTGGGTCTTTGGTTGACAACCGGCGTAGCCTTCATATTTACAGGTTTTGTAATATGGCTTCTTGAGCACCGGGAAAACACCGAGTTCAGAGGTCCTCCACAGCAACAACTTGGCATGATATTCTGGTTCTCCTTTTCAACCCTCGTCTTTGCACACAGAGAGAAAGTGGTGAACAATTGGTCAAGGTTTGTGCTGATTATATGGGTTTTTGTGGTACTGATCCTAACACAGAGTTACACTGCAAGCTTAGCCTCGATGTTAACAGTACAGAAGTTGCAGCCTGCATTCACTGATATAAAAGAGATACAAAGAAATGGTTACAAAGTAGGATATCAAAATAGATCCTTTATTGAAGGGTTTCTCATGGAACATTTAAATTTTGATGAGACCCAGTTGGTGCCATTGGTAACCATTCAGGATTATCATAACGCACTCTCTAGAGGAAATAAGAATAGAGTTGCTGCCATTTTAGATGAAGTCCCTTACCTCAAGTTGTTTCTTAAAACGAACTGTTCCAAGTACACCATGGTTGGACCAACCTACAAAACTGATGGATTTGGCTTTGCCTTCCCATTAGATTCCCCGCTGGTATCCTACATGTCGAGGGCAATCTTGAACGTGACTCAAGATAAAAATCAGATGGAAGGAATTCAGTCGACTTACTTTGATTACTTTGATAACCAACCTGCCTGTGAGGATCAAGGTGCCAAAATTTCTTCAGAGGGTCCAAGTCTTGGTGTCTACAGCTTTGGAGGCCTCTTCATCATCGCAGGTGTGGCCTCCATGGTTGCTCTTTTGATGTACATGTATCACTTCCTTTGCTCTCATTGGCCAGCTTTGCGAACAATTAGTTCTTCTGAGAGCAGATTTTGGGAGAAATTGGTTGAAGTGGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGAATCAAGAGTACATGCTTTAGACACTCCTGATGAAGGTCTAGCAGCTGCACCGGGTGCTAATTAA

Protein Analysis

356

Amino Acids

40.65

Weight (kDa)

6.51

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lig_chan PF00060 22 - 281 2.4e-37 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011248)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04920
fragaria_vesca FvH4_4g13520 FvH4_4g13520 FvH4_4g13520
malus_domestica MD04G1013500.v1.1
prunus_persica Prupe.1G159700_v2.0.a1 Prupe.1G159700_v2.0.a1 Prupe.1G159700_v2.0.a1
pyrus_communis pycom04g01050
rosa_chinensis RchiOBHm_Chr4g0414151
rosa_laevigata RLG00000008166
rosa_multiflora Rmu_sc0001063.1_g000015
rosa_roxburghii Rroxscaffold_5G00358160
rosa_rugosa Rorug04G0126600
rosa_samantha Rh4AG184700 Rh4BG184100 Rh4CG196400 Rh4DG180000
rosa_wichuraiana Rw0G005040 Rw4G015730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 824
Acc36I ACCTGC 2 cut(s) 757, 824
AccB1I GGYRCC 2 cut(s) 460, 767
AccB7I CCANNNNNTGG 1 cut(s) 797
AccI GTMKAC 2 cut(s) 719, 804
AciI CCGC 2 cut(s) 56, 647
AclWI GGATC 3 cut(s) 277, 399, 768
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 3 cut(s) 439, 711, 774
AcuI CTGAAG 1 cut(s) 765
AdeI CACNNNGTG 1 cut(s) 1061
AfaI GTAC 5 cut(s) 279, 330, 584, 866, 1017
AfiI CCNNNNNNNGG 2 cut(s) 797, 1040
AflIII ACRYGT 2 cut(s) 660, 867
AgsI TTSAA 5 cut(s) 52, 201, 416, 679, 950
AluBI AGCT 5 cut(s) 63, 309, 810, 899, 1052
AluI AGCT 5 cut(s) 63, 309, 810, 899, 1052
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 3 cut(s) 277, 399, 768
AoxI GGCC 3 cut(s) 817, 840, 893
ApeKI GCWGC 4 cut(s) 340, 524, 1049, 1052
ApoI RAATTY 3 cut(s) 439, 711, 774
Asp700I GAANNNNTTC 2 cut(s) 420, 711
AspS9I GGNCC 3 cut(s) 155, 596, 788
AsuC2I CCSGG 2 cut(s) 134, 1059
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 3 cut(s) 155, 596, 788
BalI TGGCCA 1 cut(s) 895
BanI GGYRCC 2 cut(s) 460, 767
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 352, 511, 1039, 1061
BccI CCATC 2 cut(s) 608, 697
BciVI GTATCC 1 cut(s) 664
BcnI CCSGG 2 cut(s) 134, 1059
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 2 cut(s) 501, 1046
BfmI CTRYAG 1 cut(s) 805
BfuAI ACCTGC 2 cut(s) 757, 824
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 1 cut(s) 976
BisI GCNGC 5 cut(s) 56, 341, 525, 1050, 1053
BlpI GCTNAGC 2 cut(s) 59, 310
BlsI GCNGC 5 cut(s) 57, 342, 526, 1051, 1054
Bme1390I CCNGG 2 cut(s) 134, 1059
Bme18I GGWCC 3 cut(s) 155, 596, 788
BmgT120I GGNCC 3 cut(s) 155, 596, 788
BmiI GGNNCC 3 cut(s) 462, 769, 789
BmrFI CCNGG 2 cut(s) 134, 1059
BmrI ACTGGG 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 448
Bpu1102I GCTNAGC 2 cut(s) 59, 310
BpuEI CTTGAG 3 cut(s) 146, 536, 672
BpuMI CCSGG 2 cut(s) 134, 1059
BsaBI GATNNNNATC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 588, 846
Bsc4I CCNNNNNNNGG 2 cut(s) 797, 1040
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 588, 846
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 2 cut(s) 797, 1040
BseMII CTCAG 1 cut(s) 912
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 4 cut(s) 352, 511, 1039, 1061
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 3 cut(s) 819, 842, 895
BshNI GGYRCC 2 cut(s) 460, 767
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 3 cut(s) 84, 133, 1058
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 797, 1040
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 819, 842, 895
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 4 cut(s) 282, 404, 760, 976
Bsp1720I GCTNAGC 2 cut(s) 59, 310
Bsp19I CCATGG 2 cut(s) 588, 846
BspACI CCGC 2 cut(s) 56, 647
BspANI GGCC 3 cut(s) 819, 842, 895
BspCNI CTCAG 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 462, 769, 789
BspMI ACCTGC 2 cut(s) 757, 824
BspPI GGATC 3 cut(s) 277, 399, 768
BspT107I GGYRCC 2 cut(s) 460, 767
BspTNI GGTCTC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 588, 846
BssMI GATC 4 cut(s) 282, 404, 760, 976
BssT1I CCWWGG 2 cut(s) 588, 846
Bst4CI ACNGT 2 cut(s) 328, 575
Bst6I CTCTTC 2 cut(s) 827, 997
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstAUI TGTACA 1 cut(s) 864
BstC8I GCNNGC 3 cut(s) 307, 345, 897
BstDEI CTNAG 3 cut(s) 59, 310, 921
BstDSI CCRYGG 2 cut(s) 588, 846
BstEII GGTNACC 1 cut(s) 469
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstKTI GATC 4 cut(s) 285, 407, 763, 979
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 4 cut(s) 282, 404, 760, 976
BstMWI GCNNNNNNNGC 6 cut(s) 127, 311, 816, 839, 901, 1061
BstNSI RCATGY 3 cut(s) 664, 871, 1022
BstPI GGTNACC 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 132, 1057
BstSFI CTRYAG 1 cut(s) 805
BstV1I GCAGC 4 cut(s) 352, 511, 1039, 1061
BstX2I RGATCY 2 cut(s) 404, 976
BstYI RGATCY 2 cut(s) 404, 976
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 3 cut(s) 819, 842, 895
BtgI CCRYGG 2 cut(s) 588, 846
BtgZI GCGATG 1 cut(s) 814
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 300, 351
BveI ACCTGC 2 cut(s) 757, 824
Cac8I GCNNGC 3 cut(s) 307, 345, 897
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 155, 596, 788
Csp6I GTAC 5 cut(s) 278, 329, 583, 865, 1016
CviAII CATG 7 cut(s) 178, 427, 589, 661, 847, 868, 1019
CviQI GTAC 5 cut(s) 278, 329, 583, 865, 1016
DdeI CTNAG 3 cut(s) 59, 310, 921
DpnI GATC 4 cut(s) 284, 406, 762, 978
DpnII GATC 4 cut(s) 282, 404, 760, 976
DraI TTTAAA 1 cut(s) 438
DraIII CACNNNGTG 1 cut(s) 1061
EaeI YGGCCR 1 cut(s) 893
Eam1104I CTCTTC 2 cut(s) 827, 997
EarI CTCTTC 2 cut(s) 827, 997
Eco130I CCWWGG 2 cut(s) 588, 846
Eco147I AGGCCT 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 443
Eco32I GATATC 1 cut(s) 395
Eco47I GGWCC 3 cut(s) 155, 596, 788
Eco57I CTGAAG 1 cut(s) 765
Eco91I GGTNACC 1 cut(s) 469
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoO109I RGGNCCY 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 711
EcoRV GATATC 1 cut(s) 395
EcoT14I CCWWGG 2 cut(s) 588, 846
ErhI CCWWGG 2 cut(s) 588, 846
FaeI CATG 7 cut(s) 181, 430, 592, 664, 850, 871, 1022
FaqI GGGAC 1 cut(s) 527
FatI CATG 7 cut(s) 177, 426, 588, 660, 846, 867, 1018
FauI CCCGC 1 cut(s) 654
FblI GTMKAC 2 cut(s) 719, 804
Fnu4HI GCNGC 5 cut(s) 56, 341, 525, 1050, 1053
Fsp4HI GCNGC 5 cut(s) 56, 341, 525, 1050, 1053
FspBI CTAG 2 cut(s) 501, 1046
GluI GCNGC 5 cut(s) 56, 341, 525, 1050, 1053
HaeIII GGCC 3 cut(s) 819, 842, 895
HapII CCGG 3 cut(s) 84, 133, 1058
Hin1II CATG 7 cut(s) 181, 430, 592, 664, 850, 871, 1022
HincII GTYRAC 3 cut(s) 78, 324, 720
HindII GTYRAC 3 cut(s) 78, 324, 720
HindIII AAGCTT 2 cut(s) 61, 307
HinfI GANTC 3 cut(s) 641, 685, 1007
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 3 cut(s) 84, 133, 1058
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 6 cut(s) 78, 235, 324, 585, 720, 805
Hpy188I TCNGA 4 cut(s) 152, 702, 784, 922
Hpy188III TCNNGA 8 cut(s) 49, 125, 479, 501, 676, 689, 1011, 1034
Hpy8I GTNNAC 6 cut(s) 78, 235, 324, 585, 720, 805
HpyAV CCTTC 5 cut(s) 103, 410, 640, 701, 1034
HpyCH4III ACNGT 2 cut(s) 328, 575
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 5 cut(s) 215, 305, 340, 347, 1055
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 311, 816, 839, 901, 1061
HpyF3I CTNAG 3 cut(s) 59, 310, 921
HpySE526I ACGT 1 cut(s) 681
Hsp92II CATG 7 cut(s) 181, 430, 592, 664, 850, 871, 1022
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 4 cut(s) 282, 404, 760, 976
Lsp1109I GCAGC 4 cut(s) 352, 511, 1039, 1061
MaeI CTAG 2 cut(s) 501, 1046
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 4 cut(s) 296, 380, 469, 682
MalI GATC 4 cut(s) 284, 406, 762, 978
MboI GATC 4 cut(s) 282, 404, 760, 976
MboII GAAGA 5 cut(s) 29, 771, 814, 909, 1014
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 2 cut(s) 404, 976
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 895
MluCI AATT 7 cut(s) 238, 439, 711, 774, 909, 941, 1066
MluNI TGGCCA 1 cut(s) 895
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 1 cut(s) 574
Mox20I TGGCCA 1 cut(s) 895
MroXI GAANNNNTTC 2 cut(s) 420, 711
MscI TGGCCA 1 cut(s) 895
MseI TTAA 6 cut(s) 11, 323, 437, 564, 996, 1069
Msp20I TGGCCA 1 cut(s) 895
MspA1I CMGCKG 2 cut(s) 649, 1052
MspI CCGG 3 cut(s) 84, 133, 1058
MspR9I CCNGG 2 cut(s) 134, 1059
MunI CAATTG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 347
MwoI GCNNNNNNNGC 6 cut(s) 127, 311, 816, 839, 901, 1061
NciI CCSGG 2 cut(s) 134, 1059
NcoI CCATGG 2 cut(s) 588, 846
NdeII GATC 4 cut(s) 282, 404, 760, 976
NlaIII CATG 7 cut(s) 181, 430, 592, 664, 850, 871, 1022
NlaIV GGNNCC 3 cut(s) 462, 769, 789
NmuCI GTSAC 1 cut(s) 682
NspI RCATGY 3 cut(s) 664, 871, 1022
PaqCI CACCTGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 819
PciI ACATGT 2 cut(s) 660, 867
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 2 cut(s) 420, 711
PfeI GAWTC 2 cut(s) 641, 1007
PflMI CCANNNNNTGG 1 cut(s) 797
PkrI GCNGC 5 cut(s) 57, 342, 526, 1051, 1054
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PpuMI RGGWCCY 1 cut(s) 155
PscI ACATGT 2 cut(s) 660, 867
Psp5II RGGWCCY 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 462, 769, 789
PspPI GGNCC 3 cut(s) 155, 596, 788
PspPPI RGGWCCY 1 cut(s) 155
PsuI RGATCY 2 cut(s) 404, 976
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 5 cut(s) 279, 330, 584, 866, 1017
RsaNI GTAC 5 cut(s) 278, 329, 583, 865, 1016
SalI GTCGAC 1 cut(s) 718
SaqAI TTAA 6 cut(s) 11, 323, 437, 564, 996, 1069
SatI GCNGC 5 cut(s) 56, 341, 525, 1050, 1053
Sau3AI GATC 4 cut(s) 282, 404, 760, 976
Sau96I GGNCC 3 cut(s) 155, 596, 788
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 2 cut(s) 134, 1059
SduI GDGCHC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 805
SinI GGWCC 3 cut(s) 155, 596, 788
SmiI ATTTAAAT 1 cut(s) 438
SmlI CTYRAG 3 cut(s) 125, 551, 687
SmoI CTYRAG 3 cut(s) 125, 551, 687
Sse9I AATT 7 cut(s) 238, 439, 711, 774, 909, 941, 1066
SseBI AGGCCT 1 cut(s) 819
SsiI CCGC 2 cut(s) 56, 647
SspMI CTAG 2 cut(s) 501, 1046
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 2 cut(s) 132, 1057
StyI CCWWGG 2 cut(s) 588, 846
SwaI ATTTAAAT 1 cut(s) 438
TaaI ACNGT 2 cut(s) 328, 575
TaiI ACGT 1 cut(s) 684
TaqI TCGA 3 cut(s) 317, 665, 719
TasI AATT 7 cut(s) 238, 439, 711, 774, 909, 941, 1066
TatI WGTACW 4 cut(s) 328, 582, 864, 1015
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 2 cut(s) 641, 1007
Tru1I TTAA 6 cut(s) 11, 323, 437, 564, 996, 1069
Tru9I TTAA 6 cut(s) 11, 323, 437, 564, 996, 1069
TscAI CASTG 2 cut(s) 307, 358
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 4 cut(s) 340, 524, 1049, 1052
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 4 cut(s) 85, 552, 814, 1053
TspRI CASTG 2 cut(s) 307, 358
Van91I CCANNNNNTGG 1 cut(s) 797
VpaK11BI GGWCC 3 cut(s) 155, 596, 788
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 3 cut(s) 439, 711, 774
XbaI TCTAGA 1 cut(s) 500
XceI RCATGY 3 cut(s) 664, 871, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 2 cut(s) 719, 804
XmnI GAANNNNTTC 2 cut(s) 420, 711
XspI CTAG 2 cut(s) 501, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.