Rorug04G0171300

NAD(P)-binding Rossmann-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013079
Physical Location & Seq
Reverse (-)
30161384 .. 30164610
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0171300.1

Sequence Viewer

Length: 441 bp
ATGCAGATTGGGAAGTTGGCTGTGGTCCGTCACGCATTGTCCAGATGCCCCTATTGCGCAAGATTCTATGCAAAAAAGTCTGCACGTGATTTTGTTGCCGCTTTCCTTTTATTCAGTGCTATCTTGATCTACTATTTTCATTCAGATTCTAATGGGTGTGGTTTTATTGAGATAACAGGCCTGGTGCTTGCTTTTCTGAGATTTCGTTCCAAAACCCGCAGCAACGCGCGGGAACAAATTCTAGTAGCTGAAGTGTTGATCAAAGAAAAGAAGGTAAAAGTGCTAATTGGCATAGAGACTTGGCAGGAAGCAGCTTTAGTAGCCGATGTGGGGAACCGAGCTCAAATTCCAGTGATTTCATTTGCAGCACCCACTATAACCCCACCTCTTGTGAAAACTACTGGAGATATTTATACTAAATCTGGATGCCAAATGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_8

Protein Analysis

146

Amino Acids

16.2

Weight (kDa)

9.66

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04650
fragaria_vesca FvH4_4g17540
malus_domestica MD04G1226700.v1.1
prunus_persica Prupe.6G345400_v2.0.a1 Prupe.6G345400_v2.0.a1 Prupe.6G345400_v2.0.a1 Prupe.6G345400_v2.0.a1
pyrus_communis pycom04g19990
rosa_chinensis RchiOBHm_Chr4g0421451
rosa_laevigata RLG00000007683
rosa_multiflora Rmu_sc0001962.1_g000014
rosa_roxburghii Rroxscaffold_5G00363720
rosa_rugosa Rorug04G0171300
rosa_samantha Rh4AG232000 Rh4BG234900 Rh4CG246500 Rh4DG230500
rosa_wichuraiana Rw4G020210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 58
AccII CGCG 2 cut(s) 227, 229
AciI CCGC 3 cut(s) 99, 217, 229
AcsI RAATTY 2 cut(s) 237, 345
AcuI CTGAAG 1 cut(s) 270
AcvI CACGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 330
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 248, 314, 341
AluI AGCT 3 cut(s) 248, 314, 341
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 219, 311, 365
ApoI RAATTY 2 cut(s) 237, 345
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 2 cut(s) 59, 229
AspS9I GGNCC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 343
BbrPI CACGTG 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 3 cut(s) 231, 323, 377
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 242
BisI GCNGC 4 cut(s) 99, 220, 312, 366
BlsI GCNGC 4 cut(s) 100, 221, 313, 367
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 2 cut(s) 35, 416
BpmI CTGGAG 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 350, 406
BseBI CCWGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 2 cut(s) 350, 406
BseXI GCAGC 3 cut(s) 231, 323, 377
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 227, 229
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 126, 258
BspACI CCGC 3 cut(s) 99, 217, 229
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 2 cut(s) 227, 229
BspLI GGNNCC 1 cut(s) 335
BsrI ACTGG 2 cut(s) 350, 406
BssMI GATC 2 cut(s) 126, 258
Bst2UI CCWGG 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 431
BstFNI CGCG 2 cut(s) 227, 229
BstHHI GCGC 2 cut(s) 59, 229
BstKTI GATC 2 cut(s) 129, 261
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 126, 258
BstMWI GCNNNNNNNGC 2 cut(s) 54, 320
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 2 cut(s) 227, 229
BstV1I GCAGC 3 cut(s) 231, 323, 377
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 121, 357
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 2 cut(s) 59, 229
Cfr13I GGNCC 1 cut(s) 25
CviJI RGCY 6 cut(s) 20, 180, 248, 314, 323, 341
CviKI_1 RGCY 6 cut(s) 20, 180, 248, 314, 323, 341
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 128, 260
DpnII GATC 2 cut(s) 126, 258
Ecl136II GAGCTC 1 cut(s) 341
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 270
Eco72I CACGTG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 343
FaiI YATR 4 cut(s) 69, 293, 377, 414
FauI CCCGC 2 cut(s) 222, 224
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 99, 220, 312, 366
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 99, 220, 312, 366
FspBI CTAG 1 cut(s) 242
FspI TGCGCA 1 cut(s) 58
GlaI GCGC 2 cut(s) 58, 228
GluI GCNGC 4 cut(s) 99, 220, 312, 366
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 1 cut(s) 180
HhaI GCGC 2 cut(s) 59, 229
Hin6I GCGC 2 cut(s) 57, 227
HinP1I GCGC 2 cut(s) 57, 227
HinfI GANTC 2 cut(s) 63, 146
Hpy188I TCNGA 2 cut(s) 145, 198
Hpy188III TCNNGA 3 cut(s) 42, 124, 423
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 4, 71, 83, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 320
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 85
HspAI GCGC 2 cut(s) 57, 227
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 126, 258
LpnPI CCDG 8 cut(s) 55, 162, 167, 194, 290, 363, 387, 408
Lsp1109I GCAGC 3 cut(s) 231, 323, 377
LweI GCATC 2 cut(s) 35, 416
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 128, 260
MboI GATC 2 cut(s) 126, 258
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 3 cut(s) 237, 285, 345
MnlI CCTC 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 2 cut(s) 227, 229
MwoI GCNNNNNNNGC 2 cut(s) 54, 320
NdeII GATC 2 cut(s) 126, 258
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 29
NsbI TGCGCA 1 cut(s) 58
PceI AGGCCT 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 63, 146
PkrI GCNGC 4 cut(s) 100, 221, 313, 367
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 180
PspCI CACGTG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 343
SatI GCNGC 4 cut(s) 99, 220, 312, 366
Sau3AI GATC 2 cut(s) 126, 258
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 343
SetI ASST 6 cut(s) 88, 250, 276, 316, 343, 388
SfaNI GCATC 2 cut(s) 35, 416
SinI GGWCC 1 cut(s) 25
Sse9I AATT 3 cut(s) 237, 285, 345
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 3 cut(s) 99, 217, 229
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 343
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 180
TaiI ACGT 1 cut(s) 88
TasI AATT 3 cut(s) 237, 285, 345
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 63, 146
TscAI CASTG 2 cut(s) 121, 357
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 3 cut(s) 219, 311, 365
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 128, 348
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 2 cut(s) 121, 357
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 2 cut(s) 237, 345
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.