Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008568

Physical Location & Seq

Genomic Coordinates Reverse (-)

35127915 .. 35129426

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCAAGCTACGGCTTGACAATCCCGGGAGTCGATTCCCGCCTCTACGTCACCACCATCTCCACCGCCCGACCCGCGCCCGACCCGAAACCCAGTTCGCTGCCGCTGTTCTCGTCCCGGGCGACCCGGTTCGGGTCGATCAAGGCCAAGGCGGCGACGATGAACGATGCGGCGGAGACGGCGGCGGAGCGGAAGGAGCTGTCGTTTTACGAGCTGCTGGGGATACCCGAGTCCGGATCCATAACGGAGATCAAGCAGGCGTACAAGCAGCTGGCAAGGAAGTACCACCCGGACGTGTCGCCGCCGGGTCGGGTCGAGGAGTATACGGAGAAGTTTATTCGGGTTCAGGAGGCGTATGAGACGTTGTCGGATTCGAGGAGGAGGGCTATGTATGATCAGGACATGGCTAGGGGTCTTCACCTTGCCTTCTCTGCTAGAAGATACCAATATGATGAGGGAATGGAAGCAAAAGGTGACTGGAAGAATCGCTGGCAAAGCCAGCTATCTGAGCTGAAGAGAAGAAGCTCATACAAGGATGATCGACAAAATATGTCATGGGGAGCTAGAATGCGTCGGCAAAAAGAGGGACTGTCTGATGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016020 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Citrate_synt CoA_binding Ligase_CoA

Protein Analysis

201

Amino Acids

23.05

Weight (kDa)

9.41

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	69 - 132	5.5e-21	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06650 AT3G06650 AT5G49460 AT5G49460
fragaria_vesca	FvH4_4g19740 FvH4_4g19740 FvH4_4g19740 FvH4_4g19740
malus_domestica	MD13G1153500.v1.1 MD16G1154000.v1.1
prunus_persica	Prupe.1G117200_v2.0.a1 Prupe.1G117200_v2.0.a1
pyrus_communis	pycom13g13120 pycom16g13050
rosa_chinensis	RchiOBHm_Chr4g0425291
rosa_laevigata	RLG00000007382
rosa_multiflora	Rmu_sc0009125.1_g000003
rosa_roxburghii	Rroxscaffold_5G00367290
rosa_rugosa	Rorug04G0202100 Rorug04G0202200 Rorug04G0202300
rosa_samantha	Rh4CG276200
rosa_wichuraiana	Rw4G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	323
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	233
AclWI	GGATC	2 cut(s)	231, 244
AcuI	CTGAAG	1 cut(s)	533
AfaI	GTAC	2 cut(s)	263, 284
AfiI	CCNNNNNNNGG	3 cut(s)	11, 132, 233
AflIII	ACRYGT	1 cut(s)	294
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	8 cut(s)	9, 199, 214, 271, 502, 511, 525, 563
AluI	AGCT	8 cut(s)	9, 199, 214, 271, 502, 511, 525, 563
Alw26I	GTCTC	2 cut(s)	170, 353
AlwI	GGATC	2 cut(s)	231, 244
Ama87I	CYCGRG	3 cut(s)	25, 117, 227
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	100, 214, 268
AspLEI	GCGC	1 cut(s)	79
AsuC2I	CCSGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
AsuHPI	GGTGA	3 cut(s)	43, 410, 485
AvaI	CYCGRG	3 cut(s)	25, 117, 227
BaeI	ACNNNNGTAYC	2 cut(s)	215, 248
BamHI	GGATCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	3 cut(s)	87, 201, 280
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	2 cut(s)	28, 195
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
BcoDI	GTCTC	2 cut(s)	170, 353
BfaI	CTAG	3 cut(s)	408, 435, 564
BfuI	GTATCC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	8 cut(s)	101, 104, 153, 171, 183, 215, 269, 302
BlsI	GCNGC	8 cut(s)	102, 105, 154, 172, 184, 216, 270, 303
Bme1390I	CCNGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
BmeT110I	CYCGRG	3 cut(s)	25, 117, 227
BmgBI	CACGTC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	407
BpuMI	CCSGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
BsaJI	CCNNGG	3 cut(s)	25, 117, 147
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 132, 233
Bse1I	ACTGG	2 cut(s)	93, 482
BseAI	TCCGGA	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	25, 117, 147
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	3 cut(s)	11, 132, 233
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	93, 482
BseRI	GAGGAG	3 cut(s)	332, 391, 394
BseXI	GCAGC	3 cut(s)	87, 201, 280
BseYI	CCCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	146
BsiHKCI	CYCGRG	3 cut(s)	25, 117, 227
BsiSI	CCGG	6 cut(s)	26, 118, 127, 234, 290, 305
BslFI	GGGAC	2 cut(s)	100, 600
BslI	CCNNNNNNNGG	3 cut(s)	11, 132, 233
BsmAI	GTCTC	2 cut(s)	170, 353
BsmBI	CGTCTC	2 cut(s)	170, 353
BsmFI	GGGAC	2 cut(s)	100, 600
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	3 cut(s)	25, 117, 227
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	138, 236, 249, 394, 538
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	499
BspEI	TCCGGA	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	231, 244
BsrBI	CCGCTC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	93, 482
BssECI	CCNNGG	3 cut(s)	25, 117, 147
BssMI	GATC	5 cut(s)	138, 236, 249, 394, 538
BssNAI	GTATAC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	4 cut(s)	258, 273, 491, 500
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	5 cut(s)	141, 239, 252, 397, 541
BstMAI	GTCTC	2 cut(s)	170, 353
BstMBI	GATC	5 cut(s)	138, 236, 249, 394, 538
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 152, 179, 196, 431, 495, 499, 508
BstSCI	CCNGG	7 cut(s)	24, 25, 116, 117, 125, 288, 304
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	87, 201, 280
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BstZ17I	GTATAC	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	541
Cac8I	GCNNGC	4 cut(s)	258, 273, 491, 500
CfoI	GCGC	1 cut(s)	79
Cfr9I	CCCGGG	2 cut(s)	25, 117
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	262, 283
CviAII	CATG	2 cut(s)	403, 555
CviQI	GTAC	2 cut(s)	262, 283
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	5 cut(s)	140, 238, 251, 396, 540
DpnII	GATC	5 cut(s)	138, 236, 249, 394, 538
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	2 cut(s)	188, 200
Eco130I	CCWWGG	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	533
Eco88I	CYCGRG	3 cut(s)	25, 117, 227
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
Esp3I	CGTCTC	2 cut(s)	170, 353
FaeI	CATG	2 cut(s)	406, 558
FaqI	GGGAC	2 cut(s)	100, 600
FatI	CATG	2 cut(s)	402, 554
FauI	CCCGC	2 cut(s)	47, 82
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	8 cut(s)	101, 104, 153, 171, 183, 215, 269, 302
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	8 cut(s)	101, 104, 153, 171, 183, 215, 269, 302
FspBI	CTAG	3 cut(s)	408, 435, 564
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	8 cut(s)	101, 104, 153, 171, 183, 215, 269, 302
GsaI	CCCAGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	6 cut(s)	26, 118, 127, 234, 290, 305
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	406, 558
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	5 cut(s)	30, 35, 230, 371, 484
HpaII	CCGG	6 cut(s)	26, 118, 127, 234, 290, 305
HphI	GGTGA	3 cut(s)	43, 410, 485
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	3 cut(s)	370, 508, 595
Hpy188III	TCNNGA	3 cut(s)	234, 347, 398
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	2 cut(s)	160, 576
HpyAV	CCTTC	2 cut(s)	187, 436
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	3 cut(s)	48, 294, 362
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 152, 179, 196, 431, 495, 499, 508
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	3 cut(s)	48, 294, 362
Hsp92II	CATG	2 cut(s)	406, 558
HspAI	GCGC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	138, 236, 249, 394, 538
LmnI	GCTCC	3 cut(s)	187, 196, 560
Lsp1109I	GCAGC	3 cut(s)	87, 201, 280
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	3 cut(s)	408, 435, 564
MaeII	ACGT	3 cut(s)	48, 294, 362
MaeIII	GTNAC	2 cut(s)	49, 473
MalI	GATC	5 cut(s)	140, 238, 251, 396, 540
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	5 cut(s)	138, 236, 249, 394, 538
MboII	GAAGA	5 cut(s)	407, 450, 493, 526, 531
MflI	RGATCY	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	39, 239
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	53, 310, 343, 369, 372, 375, 448, 577
MroI	TCCGGA	1 cut(s)	233
MspA1I	CMGCKG	2 cut(s)	106, 271
MspI	CCGG	6 cut(s)	26, 118, 127, 234, 290, 305
MspR9I	CCNGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
Mva1269I	GAATGC	1 cut(s)	573
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	8 cut(s)	74, 152, 179, 196, 431, 495, 499, 508
NciI	CCSGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
NdeII	GATC	5 cut(s)	138, 236, 249, 394, 538
NlaIII	CATG	2 cut(s)	406, 558
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	49, 473
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	35, 371, 484
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	8 cut(s)	102, 105, 154, 172, 184, 216, 270, 303
PleI	GAGTC	2 cut(s)	38, 238
PpsI	GAGTC	2 cut(s)	38, 238
PspFI	CCCAGC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	263, 284
RsaNI	GTAC	2 cut(s)	262, 283
SatI	GCNGC	8 cut(s)	101, 104, 153, 171, 183, 215, 269, 302
Sau3AI	GATC	5 cut(s)	138, 236, 249, 394, 538
SchI	GAGTC	2 cut(s)	39, 239
ScrFI	CCNGG	7 cut(s)	26, 27, 118, 119, 127, 290, 306
SfaNI	GCATC	1 cut(s)	157
SmaI	CCCGGG	2 cut(s)	27, 119
SspMI	CTAG	3 cut(s)	408, 435, 564
StyD4I	CCNGG	7 cut(s)	24, 25, 116, 117, 125, 288, 304
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	3 cut(s)	51, 297, 365
TaqI	TCGA	5 cut(s)	33, 137, 315, 374, 541
TauI	GCSGC	5 cut(s)	106, 155, 173, 185, 304
TfiI	GAWTC	3 cut(s)	35, 371, 484
TseFI	GTSAC	2 cut(s)	49, 473
TseI	GCWGC	3 cut(s)	100, 214, 268
Tsp45I	GTSAC	2 cut(s)	49, 473
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	2 cut(s)	260, 341
TspMI	CCCGGG	2 cut(s)	25, 117
Tth111I	GACNNNGTC	1 cut(s)	364
XmaI	CCCGGG	2 cut(s)	25, 117
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	3 cut(s)	408, 435, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.