Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008568

Physical Location & Seq

Genomic Coordinates Forward (+)

47782783 .. 47788359

Gene Structure 5577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGTCCACCGGTCAACTGTTTTCCCGGACCACTCAAGCCTTGTTCTACAACTACAAGCAGCTCCCTATCCAGCGCATGCTTGATTTTGACTTCCTTTGTGGGAGGGAAACACCGTCTGTTGCCGGAATCATTAATCCCGGTGCTGAGGGATTTCAGAAGCTCTTTTTCGGTCAGGAGGAAATTGCCATACCAGTGCACTCAAGCATTGAGGCATCATGTGCCGCACATCCCACGGCCGATGTATTTATCAACTTTGCTTCCTACAGAAGTGCTGCTGCTTCTTCCATGACTGCTCTCAAGCAGCCAACCATCAGAGTTGTGGCAATTATTGCTGAGGGTGTGCCTGAGTCAGACGCTAAGCAATTGATTGCATATGCAAGGGCAAACAACAAGGTTGTCATTGGCCCAGCTACTGTTGGAGGAATCCAAGCTGGAGCTTTTAAGATTGGTGACACTGCTGGAACAATTGATAACATTATTCATTGCAAGCTGTACAGGCCTGGATCTGTTGGTTTTGTCTCCAAATCTGGTGGGATGTCCAATGAAATGTACAATACTGTAGCCCGTGTAACAGACGGACTTTATGAAGGTATTGCTATTGGAGGTGATGTGTTCCCAGGTTCTACTCTCTCGGACCATGTTCTGCGATTTAACAATATCCCTCAGGTTAAAATTATTGTTGTACTTGGGGAACTTGGTGGGAGAGATGAGTATTCTCTAGTTGAAGCTTTAAAACAGGGAAAAGTTAACAAGCCAGTGGTTGCTTGGGTTAGTGGAACTTGTGCAACGCTTTTCAAATCCGAAGTACAATTTGGACATGCTGGTGCTAAAAGTGGTGGTGAGATGGAGTCTGCACAAGCAAAGAACCAAGCCCTGAGGGACGCTGGAGCTGTTGTTCCCACTTCGTATGAAGCTCTAGAAACTGCCATCAAGGAAACCTTTGAGAAATTGGTTGAAGAGGGGAAAATTGCACCAGTGAAGGAATTTAAGCCTCCACAGATACCTGAAGATCTTAACATCGCAATTAAGAGTGGAAAAGTTAGGGCTCCGACTCATATTATATCCACAATCTCTGATGATAGAGGTGAGGAACCATGCTATGCTGGTGTGCCCATGTCTTCCATTGTTGAGCAGGGTTATGGTGTAGGTGATGTTATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCCAGTTACTGTACCAAATTTATTGAGATATGCGTCATGTTGTGTGCTGACCATGGTCCTTGCGTCTCTGGTGCTCACAACACAATCGTAACCGCTAGGGCTGGCAAGGACCTTGTTTCCAGCCTTGTCTCAGGTTTGCTCACAATTGGTCCACGATTTGGTGGTGCCGTTGATGATGCTGCTCGATACTTCAAGGATGCATATGACAAGAATCTTACACCATATGAGTTTGTCGAAAGCATGAAAAAGAAGGGCATTCGTGTGCCAGGGATTGGTCACAGGATTAAGAGAGGAGACAACCGAGATAAGAGAGTAGAGCTCCTACAACTGTTCGCACGCACACATTTCCCTTCTGTCAAGTACATGGAATACGCCGTACAAGTTGAGACCTACACGCTCTCAAAGGCAAACAACCTGGTCCTGAATGTGGATGGTGCTATTGGAACCTTGTTCTTGGATCTCCTTGCGGGCAGTGGAATGTTCAACAAGCCAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGGCTATTTGTGTTGGCACGTTCCATTGGTTTGATTGGGCACACATTTGACCAGAAGAGGTTGAAGCAGCCCCTATACCGCCACCCATGGGAGGATGTTCTTTACACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016020 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Citrate_synt CoA_binding Ligase_CoA

Protein Analysis

608

Amino Acids

65.92

Weight (kDa)

7.17

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Succ_CoA_lig	PF13607	167 - 309	3.1e-06	Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA	PF00549	173 - 298	2e-19	CoA-ligase
Citrate_synt	PF00285	400 - 597	1.5e-16	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06650 AT3G06650 AT5G49460 AT5G49460
fragaria_vesca	FvH4_4g19740 FvH4_4g19740 FvH4_4g19740 FvH4_4g19740
malus_domestica	MD13G1153500.v1.1 MD16G1154000.v1.1
prunus_persica	Prupe.1G117200_v2.0.a1 Prupe.1G117200_v2.0.a1
pyrus_communis	pycom13g13120 pycom16g13050
rosa_chinensis	RchiOBHm_Chr4g0425291
rosa_laevigata	RLG00000007382
rosa_multiflora	Rmu_sc0009125.1_g000003
rosa_roxburghii	Rroxscaffold_5G00367290
rosa_rugosa	Rorug04G0202100 Rorug04G0202200 Rorug04G0202300
rosa_samantha	Rh4CG276200
rosa_wichuraiana	Rw4G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1349
AccB7I	CCANNNNNTGG	2 cut(s)	1343, 1457
AciI	CCGC	4 cut(s)	222, 1278, 1652, 1792
AclWI	GGATC	2 cut(s)	511, 1650
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	983, 1202
AcuI	CTGAAG	1 cut(s)	1026
AdeI	CACNNNGTG	1 cut(s)	1824
AfaI	GTAC	7 cut(s)	494, 551, 684, 807, 1198, 1547, 1563
AfiI	CCNNNNNNNGG	5 cut(s)	1343, 1457, 1612, 1801, 1804
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	7 cut(s)	725, 796, 956, 1174, 1378, 1669, 1777
AjnI	CCWGG	4 cut(s)	499, 616, 1450, 1599
AjuI	GAANNNNNNNTTGG	2 cut(s)	795, 827
AloI	GAACNNNNNNTCC	2 cut(s)	879, 911
Alw21I	GWGCWC	3 cut(s)	198, 1261, 1506
Alw26I	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	511, 1650
AlwNI	CAGNNNCTG	2 cut(s)	413, 1194
AoxI	GGCC	3 cut(s)	234, 403, 497
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	7 cut(s)	58, 272, 275, 301, 1179, 1364, 1780
ApoI	RAATTY	2 cut(s)	983, 1202
AseI	ATTAAT	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	7 cut(s)	27, 404, 634, 1241, 1294, 1334, 1603
AsuC2I	CCSGG	2 cut(s)	25, 138
AsuHPI	GGTGA	5 cut(s)	461, 617, 851, 1097, 1160
AvaII	GGWCC	6 cut(s)	27, 634, 1241, 1294, 1334, 1603
AxyI	CCTNAGG	2 cut(s)	663, 875
BaeGI	GKGCMC	3 cut(s)	198, 1113, 1755
BanI	GGYRCC	1 cut(s)	1349
BanII	GRGCYC	2 cut(s)	1048, 1506
BbsI	GAAGAC	1 cut(s)	1110
Bbv12I	GWGCWC	3 cut(s)	198, 1261, 1506
BbvCI	CCTCAGC	2 cut(s)	144, 333
BbvI	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
BccI	CCATC	4 cut(s)	317, 838, 935, 1610
BceAI	ACGGC	3 cut(s)	249, 1337, 1544
BciT130I	CCWGG	4 cut(s)	501, 618, 1452, 1601
BcnI	CCSGG	2 cut(s)	25, 138
BcoDI	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
BfaI	CTAG	3 cut(s)	719, 917, 1281
BfmI	CTRYAG	2 cut(s)	262, 558
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	8 cut(s)	60, 223, 274, 277, 303, 1181, 1366, 1782
Bme1390I	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
Bme18I	GGWCC	6 cut(s)	27, 634, 1241, 1294, 1334, 1603
BmgT120I	GGNCC	7 cut(s)	27, 404, 634, 1241, 1294, 1334, 1603
BmiI	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
BmrFI	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	3 cut(s)	221, 1351, 1372
BmuI	ACTGGG	1 cut(s)	1182
BoxI	GACNNNNGTC	1 cut(s)	1239
BpiI	GAAGAC	1 cut(s)	1110
BplI	GAGNNNNNCTC	2 cut(s)	1488, 1520
BpmI	CTGGAG	2 cut(s)	453, 906
Bpu10I	CCTNAGC	2 cut(s)	144, 333
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	3 cut(s)	18, 184, 281
BpuMI	CCSGG	2 cut(s)	25, 138
BsaI	GGTCTC	1 cut(s)	1565
BsaJI	CCNNGG	5 cut(s)	231, 616, 1237, 1451, 1799
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	594, 624, 879, 909
Bsc4I	CCNNNNNNNGG	5 cut(s)	1343, 1457, 1612, 1801, 1804
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	4 cut(s)	191, 755, 974, 1188
Bse21I	CCTNAGG	2 cut(s)	663, 875
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	4 cut(s)	501, 618, 1452, 1601
BseDI	CCNNGG	5 cut(s)	231, 616, 1237, 1451, 1799
BseGI	GGATG	5 cut(s)	226, 540, 1387, 1621, 1813
BseLI	CCNNNNNNNGG	5 cut(s)	1343, 1457, 1612, 1801, 1804
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	6 cut(s)	135, 324, 336, 677, 866, 1329
BseNI	ACTGG	4 cut(s)	191, 755, 974, 1188
BseRI	GAGGAG	1 cut(s)	1491
BseSI	GKGCMC	3 cut(s)	198, 1113, 1755
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	837
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	236, 405, 499
BshNI	GGYRCC	1 cut(s)	1349
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	3 cut(s)	198, 1261, 1506
BsiSI	CCGG	4 cut(s)	9, 25, 123, 138
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	5 cut(s)	1343, 1457, 1612, 1801, 1804
BsmAI	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
BsmBI	CGTCTC	1 cut(s)	1255
BsmFI	GGGAC	1 cut(s)	893
BsmI	GAATGC	1 cut(s)	1440
BsnI	GGCC	3 cut(s)	236, 405, 499
Bso31I	GGTCTC	1 cut(s)	1565
Bsp1286I	GDGCHC	6 cut(s)	198, 1048, 1113, 1261, 1506, 1755
Bsp1407I	TGTACA	2 cut(s)	492, 549
Bsp143I	GATC	3 cut(s)	503, 1009, 1642
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	1237, 1799
BspACI	CCGC	4 cut(s)	222, 1278, 1652, 1792
BspANI	GGCC	3 cut(s)	236, 405, 499
BspCNI	CTCAG	6 cut(s)	136, 325, 337, 676, 867, 1328
BspLI	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
BspPI	GGATC	2 cut(s)	511, 1650
BspT107I	GGYRCC	1 cut(s)	1349
BspTNI	GGTCTC	1 cut(s)	1565
BsrDI	GCAATG	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	2 cut(s)	492, 549
BsrI	ACTGG	4 cut(s)	191, 755, 974, 1188
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	5 cut(s)	231, 616, 1237, 1451, 1799
BssMI	GATC	3 cut(s)	503, 1009, 1642
BssT1I	CCWWGG	2 cut(s)	1237, 1799
Bst2UI	CCWGG	4 cut(s)	501, 618, 1452, 1601
Bst4CI	ACNGT	6 cut(s)	18, 114, 415, 559, 1196, 1515
Bst6I	CTCTTC	2 cut(s)	951, 1763
BstAPI	GCANNNNNTGC	2 cut(s)	218, 329
BstAUI	TGTACA	2 cut(s)	492, 549
BstC8I	GCNNGC	5 cut(s)	77, 488, 1288, 1522, 1654
BstDEI	CTNAG	7 cut(s)	144, 333, 345, 357, 663, 875, 1315
BstDSI	CCRYGG	3 cut(s)	231, 1237, 1799
BstF5I	GGATG	5 cut(s)	226, 540, 1387, 1621, 1813
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	506, 1012, 1645
BstMAI	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
BstMBI	GATC	3 cut(s)	503, 1009, 1642
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 329, 496
BstNI	CCWGG	4 cut(s)	501, 618, 1452, 1601
BstNSI	RCATGY	2 cut(s)	79, 821
BstPAI	GACNNNNGTC	1 cut(s)	1239
BstSCI	CCNGG	6 cut(s)	23, 136, 499, 616, 1450, 1599
BstSFI	CTRYAG	2 cut(s)	262, 558
BstSLI	GKGCMC	3 cut(s)	198, 1113, 1755
BstV1I	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
BstV2I	GAAGAC	1 cut(s)	1110
BstX2I	RGATCY	3 cut(s)	503, 1009, 1642
BstYI	RGATCY	3 cut(s)	503, 1009, 1642
BstZI	CGGCCG	1 cut(s)	234
Bsu36I	CCTNAGG	2 cut(s)	663, 875
BsuRI	GGCC	3 cut(s)	236, 405, 499
BtgI	CCRYGG	3 cut(s)	231, 1237, 1799
BtgZI	GCGATG	1 cut(s)	1003
BtsCI	GGATG	5 cut(s)	226, 540, 1387, 1621, 1813
BtsI	GCAGTG	2 cut(s)	453, 1663
BtsIMutI	CAGTG	5 cut(s)	198, 453, 762, 981, 1663
Cac8I	GCNNGC	5 cut(s)	77, 488, 1288, 1522, 1654
CaiI	CAGNNNCTG	2 cut(s)	413, 1194
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	7 cut(s)	27, 404, 634, 1241, 1294, 1334, 1603
CseI	GACGC	4 cut(s)	362, 890, 1207, 1237
CsiI	ACCWGGT	1 cut(s)	1599
Csp6I	GTAC	7 cut(s)	493, 550, 683, 806, 1197, 1546, 1562
CspAI	ACCGGT	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviQI	GTAC	7 cut(s)	493, 550, 683, 806, 1197, 1546, 1562
DdeI	CTNAG	7 cut(s)	144, 333, 345, 357, 663, 875, 1315
DpnI	GATC	3 cut(s)	505, 1011, 1644
DpnII	GATC	3 cut(s)	503, 1009, 1642
DraI	TTTAAA	1 cut(s)	732
DraIII	CACNNNGTG	1 cut(s)	1824
EaeI	YGGCCR	1 cut(s)	234
EagI	CGGCCG	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	951, 1763
EarI	CTCTTC	2 cut(s)	951, 1763
Ecl136II	GAGCTC	1 cut(s)	1504
EclXI	CGGCCG	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	1237, 1799
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	1048, 1506
Eco31I	GGTCTC	1 cut(s)	1565
Eco47I	GGWCC	6 cut(s)	27, 634, 1241, 1294, 1334, 1603
Eco52I	CGGCCG	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	1504
Eco57I	CTGAAG	1 cut(s)	1026
Eco81I	CCTNAGG	2 cut(s)	663, 875
EcoICRI	GAGCTC	1 cut(s)	1504
EcoO109I	RGGNCCY	1 cut(s)	1294
EcoRII	CCWGG	4 cut(s)	499, 616, 1450, 1599
EcoT14I	CCWWGG	2 cut(s)	1237, 1799
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	2 cut(s)	1048, 1506
ErhI	CCWWGG	2 cut(s)	1237, 1799
Esp3I	CGTCTC	1 cut(s)	1255
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FaqI	GGGAC	1 cut(s)	893
FauI	CCCGC	1 cut(s)	1645
FauNDI	CATATG	3 cut(s)	373, 1387, 1408
Fnu4HI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
FokI	GGATG	5 cut(s)	213, 547, 1394, 1628, 1820
FriOI	GRGCYC	2 cut(s)	1048, 1506
Fsp4HI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
FspBI	CTAG	3 cut(s)	719, 917, 1281
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	2 cut(s)	453, 906
HaeIII	GGCC	3 cut(s)	236, 405, 499
HapII	CCGG	4 cut(s)	9, 25, 123, 138
HgaI	GACGC	4 cut(s)	362, 890, 1207, 1237
HhaI	GCGC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	14, 748
HindII	GTYRAC	2 cut(s)	14, 748
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	6 cut(s)	126, 347, 423, 848, 1051, 1396
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	4 cut(s)	9, 25, 123, 138
HphI	GGTGA	5 cut(s)	461, 617, 851, 1097, 1160
Hpy166II	GTNNAC	5 cut(s)	6, 14, 196, 748, 1337
Hpy188I	TCNGA	8 cut(s)	156, 314, 352, 634, 802, 1050, 1075, 1710
Hpy188III	TCNNGA	3 cut(s)	173, 917, 1606
Hpy8I	GTNNAC	5 cut(s)	6, 14, 196, 748, 1337
HpyAV	CCTTC	5 cut(s)	581, 973, 1193, 1429, 1545
HpyCH4III	ACNGT	6 cut(s)	18, 114, 415, 559, 1196, 1515
HpyCH4IV	ACGT	1 cut(s)	1732
HpyCH4V	TGCA	8 cut(s)	196, 371, 377, 486, 785, 854, 971, 1385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 329, 496
HpyF3I	CTNAG	7 cut(s)	144, 333, 345, 357, 663, 875, 1315
HpySE526I	ACGT	1 cut(s)	1732
HspAI	GCGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	3 cut(s)	503, 1009, 1642
LmnI	GCTCC	5 cut(s)	66, 434, 887, 1051, 1509
Lsp1109I	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
LweI	GCATC	3 cut(s)	221, 1351, 1372
MabI	ACCWGGT	1 cut(s)	1599
MaeI	CTAG	3 cut(s)	719, 917, 1281
MaeII	ACGT	1 cut(s)	1732
MaeIII	GTNAC	5 cut(s)	449, 568, 1190, 1273, 1460
MalI	GATC	3 cut(s)	505, 1011, 1644
MboI	GATC	3 cut(s)	503, 1009, 1642
MboII	GAAGA	5 cut(s)	273, 968, 1019, 1110, 1780
MfeI	CAATTG	3 cut(s)	362, 465, 1329
MflI	RGATCY	3 cut(s)	503, 1009, 1642
MhlI	GDGCHC	6 cut(s)	198, 1048, 1113, 1261, 1506, 1755
MlyI	GAGTC	3 cut(s)	356, 857, 1045
MmeI	TCCRAC	2 cut(s)	397, 1073
Mph1103I	ATGCAT	1 cut(s)	1387
MslI	CAYNNNNRTG	3 cut(s)	191, 822, 1445
MspI	CCGG	4 cut(s)	9, 25, 123, 138
MspR9I	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
MunI	CAATTG	3 cut(s)	362, 465, 1329
Mva1269I	GAATGC	1 cut(s)	1440
MvaI	CCWGG	4 cut(s)	501, 618, 1452, 1601
MwoI	GCNNNNNNNGC	3 cut(s)	218, 329, 496
NciI	CCSGG	2 cut(s)	25, 138
NcoI	CCATGG	2 cut(s)	1237, 1799
NdeI	CATATG	3 cut(s)	373, 1387, 1408
NdeII	GATC	3 cut(s)	503, 1009, 1642
NlaIV	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
NmuCI	GTSAC	2 cut(s)	449, 1460
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	2 cut(s)	79, 821
PaeI	GCATGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	499
PctI	GAATGC	1 cut(s)	1440
PfeI	GAWTC	3 cut(s)	126, 423, 1396
PflMI	CCANNNNNTGG	2 cut(s)	1343, 1457
PfoI	TCCNGGA	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	60, 223, 274, 277, 303, 1181, 1366, 1782
PleI	GAGTC	3 cut(s)	355, 856, 1045
PpsI	GAGTC	3 cut(s)	355, 856, 1045
PpuMI	RGGWCCY	1 cut(s)	1294
PshAI	GACNNNNGTC	1 cut(s)	1239
PshBI	ATTAAT	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	1506
Psp5II	RGGWCCY	1 cut(s)	1294
Psp6I	CCWGG	4 cut(s)	499, 616, 1450, 1599
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	4 cut(s)	499, 616, 1450, 1599
PspN4I	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
PspPI	GGNCC	7 cut(s)	27, 404, 634, 1241, 1294, 1334, 1603
PspPPI	RGGWCCY	1 cut(s)	1294
PstNI	CAGNNNCTG	2 cut(s)	413, 1194
PsuI	RGATCY	3 cut(s)	503, 1009, 1642
RsaI	GTAC	7 cut(s)	494, 551, 684, 807, 1198, 1547, 1563
RsaNI	GTAC	7 cut(s)	493, 550, 683, 806, 1197, 1546, 1562
RseI	CAYNNNNRTG	3 cut(s)	191, 822, 1445
SacI	GAGCTC	1 cut(s)	1506
SatI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
Sau3AI	GATC	3 cut(s)	503, 1009, 1642
Sau96I	GGNCC	7 cut(s)	27, 404, 634, 1241, 1294, 1334, 1603
SchI	GAGTC	3 cut(s)	356, 857, 1045
ScrFI	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
SduI	GDGCHC	6 cut(s)	198, 1048, 1113, 1261, 1506, 1755
SexAI	ACCWGGT	1 cut(s)	1599
SfaNI	GCATC	3 cut(s)	221, 1351, 1372
SfcI	CTRYAG	2 cut(s)	262, 558
SinI	GGWCC	6 cut(s)	27, 634, 1241, 1294, 1334, 1603
SmiMI	CAYNNNNRTG	3 cut(s)	191, 822, 1445
SmlI	CTYRAG	3 cut(s)	33, 199, 296
SmoI	CTYRAG	3 cut(s)	33, 199, 296
SphI	GCATGC	1 cut(s)	79
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	4 cut(s)	222, 1278, 1652, 1792
SspMI	CTAG	3 cut(s)	719, 917, 1281
SstI	GAGCTC	1 cut(s)	1506
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	6 cut(s)	23, 136, 499, 616, 1450, 1599
StyI	CCWWGG	2 cut(s)	1237, 1799
TaaI	ACNGT	6 cut(s)	18, 114, 415, 559, 1196, 1515
TaiI	ACGT	1 cut(s)	1735
TaqI	TCGA	2 cut(s)	1369, 1419
TaqII	GACCGA	1 cut(s)	158
TatI	WGTACW	5 cut(s)	492, 549, 682, 805, 1545
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	126, 423, 1396
TscAI	CASTG	5 cut(s)	198, 460, 762, 981, 1663
TseFI	GTSAC	2 cut(s)	449, 1460
TseI	GCWGC	7 cut(s)	58, 272, 275, 301, 1179, 1364, 1780
Tsp45I	GTSAC	2 cut(s)	449, 1460
TspDTI	ATGAA	6 cut(s)	470, 558, 600, 924, 1442, 1701
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	5 cut(s)	198, 460, 762, 981, 1663
Van91I	CCANNNNNTGG	2 cut(s)	1343, 1457
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	6 cut(s)	27, 634, 1241, 1294, 1334, 1603
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	2 cut(s)	983, 1202
XbaI	TCTAGA	1 cut(s)	916
XceI	RCATGY	2 cut(s)	79, 821
XcmI	CCANNNNNNNNNTGG	2 cut(s)	316, 762
XspI	CTAG	3 cut(s)	719, 917, 1281
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.