Rorug04G0228200

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004424
Physical Location & Seq
Forward (+)
39242802 .. 39253275
10474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0228200.1

Sequence Viewer

Length: 1137 bp
ATGGCATCTTTCGCTCCTTCCTCTTCTTCTTCTTCTGATAACCCAATACCCATCTGGACTCCATCCTCCTCTGTATCTGCTTTTCCCGACGAGCCGTACGAAGACTCCTGCAGTATCTGCCTCGAGCCTTTCTGCTCCGATGACCCAGCCACTATTACCAGCTGCAAACATGACTATCATCTCCACTGTATATTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTTACTTGTCTTGAAGGATCCGGCTAGCCAAGGGCTTCTAGATGTTGTACAGAATGAGAAGCGCTCAAGGGCAAGAAACATATCTTCCATTGCCCCCCCAACTTTTCATAATTCCTCTGAGGACTTTGACTTTGAACATGATTCGTTCTCAGATGACTCCGATTTGGACGAGCGTATTATGCAGCATCTTGCTGCTGCGTCTAGCAGGGCTCGTTATGTACGCAGAAGGGAAAGACAGAGATATTCTGGACTGGGCCCTTCCAATGGTTTTAATTTTTCCCCTCGTGAAAATGTTTCTGGTATGGAGCAAGCACACCCAACTTCTCCTGTAGAACGTCCAAGTTTCACCTATGGGTCACCAGGAGGTGATTCACCAACTTCTCCAAGACCACCTGTTGTTCAACCTCCACCATCTTTTATCTGCAGCACTGCTGCCGACAATGATGTTCCTTTCAAACCAAGAGTTCTCTTTGGCCAGCCAACACCTAATGGACCACAAAGACAAAGCCCATCTGAGATGCTCAATTTTCCCGAGTCAATCAAATCAAAGCTGTCTGCTGCTTCAGCCAGATACAAAGAGTCCATCTCCAAAGGCACCCGAGGGTTGAAGGAAAAGCTGCTTGCTCGTAACAACTCAGTCAAGGAGATGAGCAAAGGAGTTCAACGTGAGATGACTGCAGGAATTGCTGGTGTTGCACGAATGTTCGAGCGCCTAGACCTTACCTCAAAGAAACCTGGTGCCCCTACTCCAGTTTCTGGGCGTAGTAGGGGTACTTCAAACTTCTCCGTCAAGGGAAAAGCTGTGCTAGAGAATGTTATTGTTCAGTCGTGTAATAAAAGTAGTGGAAGAATTGCTGATGAAAGTTCAGAAGCACCCTCTCAGATCATCAGGCTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

378

Amino Acids

41.36

Weight (kDa)

8.04

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 31 - 77 1.7e-08 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 32 - 84 2.1e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 35 - 77 2.8e-10 Ring finger domain
zf-RING_11 PF17123 37 - 64 7.4e-06 RING-like zinc finger
zf-RING_5 PF14634 37 - 77 9.7e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 830, 974
AccB7I CCANNNNNTGG 1 cut(s) 992
AclWI GGATC 2 cut(s) 248, 261
AcoI YGGCCR 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 4 cut(s) 98, 285, 456, 1009
AfeI AGCGCT 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 500, 992
AgsI TTSAA 7 cut(s) 250, 371, 638, 691, 844, 899, 1014
AjnI CCWGG 2 cut(s) 595, 970
AluBI AGCT 4 cut(s) 162, 787, 853, 1037
AluI AGCT 4 cut(s) 162, 787, 853, 1037
AlwI GGATC 2 cut(s) 248, 261
AlwNI CAGNNNCTG 2 cut(s) 117, 992
Ama87I CYCGRG 3 cut(s) 122, 767, 834
Aor51HI AGCGCT 1 cut(s) 299
AoxI GGCC 2 cut(s) 490, 709
ApaI GGGCCC 1 cut(s) 494
ApeKI GCWGC 8 cut(s) 162, 418, 428, 431, 660, 668, 794, 853
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspLEI GCGC 2 cut(s) 300, 948
AspS9I GGNCC 3 cut(s) 490, 491, 728
AsuHPI GGTGA 4 cut(s) 574, 585, 600, 614
AsuNHI GCTAGC 1 cut(s) 260
AvaI CYCGRG 3 cut(s) 122, 767, 834
AvaII GGWCC 1 cut(s) 728
BaeGI GKGCMC 2 cut(s) 494, 979
BalI TGGCCA 1 cut(s) 711
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 2 cut(s) 830, 974
BanII GRGCYC 2 cut(s) 448, 494
BarI GAAGNNNNNNTAC 2 cut(s) 994, 1026
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 8 cut(s) 149, 415, 418, 430, 655, 672, 781, 840
BccI CCATC 5 cut(s) 59, 70, 655, 754, 827
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 597, 972
BfaI CTAG 5 cut(s) 261, 275, 438, 950, 1043
BfmI CTRYAG 4 cut(s) 109, 564, 658, 912
BfoI RGCGCY 2 cut(s) 301, 949
BisI GCNGC 8 cut(s) 163, 419, 429, 432, 661, 669, 795, 854
BlsI GCNGC 8 cut(s) 164, 420, 430, 433, 662, 670, 796, 855
Bme1390I CCNGG 2 cut(s) 597, 972
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 3 cut(s) 122, 767, 834
BmgT120I GGNCC 3 cut(s) 490, 491, 728
BmiI GGNNCC 4 cut(s) 255, 492, 832, 976
BmrFI CCNGG 2 cut(s) 597, 972
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 3 cut(s) 14, 430, 744
BmtI GCTAGC 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 4 cut(s) 284, 316, 806, 838
BpmI CTGGAG 1 cut(s) 969
BpuEI CTTGAG 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 265, 835
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 992
Bse1I ACTGG 2 cut(s) 492, 986
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 2 cut(s) 597, 972
BseDI CCNNGG 2 cut(s) 265, 835
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 500, 992
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 5 cut(s) 345, 399, 741, 885, 1130
BseNI ACTGG 2 cut(s) 492, 986
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 2 cut(s) 494, 979
BseXI GCAGC 8 cut(s) 149, 415, 418, 430, 655, 672, 781, 840
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 2 cut(s) 492, 711
BshNI GGYRCC 2 cut(s) 830, 974
BsiHKCI CYCGRG 3 cut(s) 122, 767, 834
BsiSI CCGG 1 cut(s) 257
BsiWI CGTACG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 500, 992
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 2 cut(s) 492, 711
BsoBI CYCGRG 3 cut(s) 122, 767, 834
Bsp120I GGGCCC 1 cut(s) 490
Bsp1286I GDGCHC 3 cut(s) 448, 494, 979
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 2 cut(s) 253, 1119
BspANI GGCC 2 cut(s) 492, 711
BspCNI CTCAG 5 cut(s) 346, 398, 742, 884, 1129
BspLI GGNNCC 4 cut(s) 255, 492, 832, 976
BspMAI CTGCAG 3 cut(s) 113, 662, 916
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 2 cut(s) 248, 261
BspT107I GGYRCC 2 cut(s) 830, 974
BsrDI GCAATG 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 2 cut(s) 492, 986
BssECI CCNNGG 2 cut(s) 265, 835
BssMI GATC 2 cut(s) 253, 1119
BssSI CACGAG 1 cut(s) 519
BssT1I CCWWGG 1 cut(s) 265
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 597, 972
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 28
BstAPI GCANNNNNTGC 2 cut(s) 117, 920
BstAUI TGTACA 1 cut(s) 283
BstC8I GCNNGC 4 cut(s) 262, 546, 713, 858
BstDEI CTNAG 5 cut(s) 354, 385, 750, 871, 1116
BstEII GGTNACC 1 cut(s) 591
BstF5I GGATG 1 cut(s) 62
BstH2I RGCGCY 2 cut(s) 301, 949
BstHHI GCGC 2 cut(s) 300, 948
BstKTI GATC 2 cut(s) 256, 1122
BstMBI GATC 2 cut(s) 253, 1119
BstMWI GCNNNNNNNGC 6 cut(s) 11, 117, 415, 800, 920, 929
BstNI CCWGG 2 cut(s) 597, 972
BstPI GGTNACC 1 cut(s) 591
BstSCI CCNGG 2 cut(s) 595, 970
BstSFI CTRYAG 4 cut(s) 109, 564, 658, 912
BstSLI GKGCMC 2 cut(s) 494, 979
BstV1I GCAGC 8 cut(s) 149, 415, 418, 430, 655, 672, 781, 840
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 231
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 2 cut(s) 492, 711
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 184, 663
Cac8I GCNNGC 4 cut(s) 262, 546, 713, 858
CaiI CAGNNNCTG 2 cut(s) 117, 992
CfoI GCGC 2 cut(s) 300, 948
Cfr13I GGNCC 3 cut(s) 490, 491, 728
CseI GACGC 1 cut(s) 423
CsiI ACCWGGT 1 cut(s) 970
Csp6I GTAC 4 cut(s) 97, 284, 455, 1008
CviAII CATG 2 cut(s) 170, 374
CviQI GTAC 4 cut(s) 97, 284, 455, 1008
DdeI CTNAG 5 cut(s) 354, 385, 750, 871, 1116
DpnI GATC 2 cut(s) 255, 1121
DpnII GATC 2 cut(s) 253, 1119
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 2 cut(s) 448, 494
Eco47I GGWCC 1 cut(s) 728
Eco47III AGCGCT 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 783
Eco88I CYCGRG 3 cut(s) 122, 767, 834
Eco91I GGTNACC 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 491
EcoO65I GGTNACC 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 595, 970
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 448, 494
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 173, 377
FaiI YATR 9 cut(s) 171, 191, 317, 345, 375, 416, 453, 539, 588
FatI CATG 2 cut(s) 169, 373
Fnu4HI GCNGC 8 cut(s) 163, 419, 429, 432, 661, 669, 795, 854
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 2 cut(s) 448, 494
Fsp4HI GCNGC 8 cut(s) 163, 419, 429, 432, 661, 669, 795, 854
FspBI CTAG 5 cut(s) 261, 275, 438, 950, 1043
GlaI GCGC 2 cut(s) 299, 947
GluI GCNGC 8 cut(s) 163, 419, 429, 432, 661, 669, 795, 854
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 969
HaeII RGCGCY 2 cut(s) 301, 949
HaeIII GGCC 2 cut(s) 492, 711
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 300, 948
Hin1II CATG 2 cut(s) 173, 377
Hin6I GCGC 2 cut(s) 298, 946
HinP1I GCGC 2 cut(s) 298, 946
HinfI GANTC 7 cut(s) 58, 104, 377, 392, 605, 770, 815
HpaII CCGG 1 cut(s) 257
HphI GGTGA 4 cut(s) 574, 585, 600, 614
Hpy188I TCNGA 8 cut(s) 37, 139, 355, 388, 397, 751, 1105, 1119
Hpy188III TCNNGA 7 cut(s) 55, 86, 247, 275, 483, 521, 767
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 5 cut(s) 27, 244, 456, 504, 838
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 571, 901
HpyCH4V TGCA 6 cut(s) 111, 165, 418, 660, 914, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 117, 415, 800, 920, 929
HpyF3I CTNAG 5 cut(s) 354, 385, 750, 871, 1116
HpySE526I ACGT 2 cut(s) 571, 901
Hsp92II CATG 2 cut(s) 173, 377
HspAI GCGC 2 cut(s) 298, 946
Kzo9I GATC 2 cut(s) 253, 1119
LmnI GCTCC 3 cut(s) 19, 140, 541
Lsp1109I GCAGC 8 cut(s) 149, 415, 418, 430, 655, 672, 781, 840
LweI GCATC 3 cut(s) 14, 430, 744
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 5 cut(s) 261, 275, 438, 950, 1043
MaeII ACGT 2 cut(s) 571, 901
MaeIII GTNAC 4 cut(s) 201, 237, 591, 863
MalI GATC 2 cut(s) 255, 1121
MboI GATC 2 cut(s) 253, 1119
MboII GAAGA 7 cut(s) 15, 18, 21, 24, 113, 312, 1095
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 3 cut(s) 448, 494, 979
MlsI TGGCCA 1 cut(s) 711
MluCI AATT 6 cut(s) 225, 346, 508, 760, 918, 1086
MluNI TGGCCA 1 cut(s) 711
MlyI GAGTC 5 cut(s) 52, 98, 386, 779, 824
Mox20I TGGCCA 1 cut(s) 711
MscI TGGCCA 1 cut(s) 711
MseI TTAA 1 cut(s) 507
Msp20I TGGCCA 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 597, 972
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 2 cut(s) 597, 972
MwoI GCNNNNNNNGC 6 cut(s) 11, 117, 415, 800, 920, 929
NdeII GATC 2 cut(s) 253, 1119
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 173, 377
NlaIV GGNNCC 4 cut(s) 255, 492, 832, 976
NmuCI GTSAC 2 cut(s) 201, 591
PaeR7I CTCGAG 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 377, 605
Pfl23II CGTACG 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 992
PkrI GCNGC 8 cut(s) 164, 420, 430, 433, 662, 670, 796, 855
PleI GAGTC 5 cut(s) 52, 98, 386, 778, 823
PpsI GAGTC 5 cut(s) 52, 98, 386, 778, 823
Psp6I CCWGG 2 cut(s) 595, 970
PspEI GGTNACC 1 cut(s) 591
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 595, 970
PspLI CGTACG 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 255, 492, 832, 976
PspOMI GGGCCC 1 cut(s) 490
PspPI GGNCC 3 cut(s) 490, 491, 728
PspXI VCTCGAGB 1 cut(s) 122
PstI CTGCAG 3 cut(s) 113, 662, 916
PstNI CAGNNNCTG 2 cut(s) 117, 992
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 4 cut(s) 98, 285, 456, 1009
RsaNI GTAC 4 cut(s) 97, 284, 455, 1008
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 8 cut(s) 163, 419, 429, 432, 661, 669, 795, 854
Sau3AI GATC 2 cut(s) 253, 1119
Sau96I GGNCC 3 cut(s) 490, 491, 728
SchI GAGTC 5 cut(s) 52, 98, 386, 779, 824
ScrFI CCNGG 2 cut(s) 597, 972
SduI GDGCHC 3 cut(s) 448, 494, 979
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 3 cut(s) 14, 430, 744
SfcI CTRYAG 4 cut(s) 109, 564, 658, 912
Sfr274I CTCGAG 1 cut(s) 122
SinI GGWCC 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 122, 301
SmoI CTYRAG 2 cut(s) 122, 301
Sse9I AATT 6 cut(s) 225, 346, 508, 760, 918, 1086
SspMI CTAG 5 cut(s) 261, 275, 438, 950, 1043
StyD4I CCNGG 2 cut(s) 595, 970
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 574, 904
TaqI TCGA 2 cut(s) 123, 942
TasI AATT 6 cut(s) 225, 346, 508, 760, 918, 1086
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 2 cut(s) 377, 605
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 191, 670
TseFI GTSAC 2 cut(s) 201, 591
TseI GCWGC 8 cut(s) 162, 418, 428, 431, 660, 668, 794, 853
Tsp45I GTSAC 2 cut(s) 201, 591
TspDTI ATGAA 2 cut(s) 332, 1110
TspGWI ACGGA 1 cut(s) 1012
TspRI CASTG 2 cut(s) 191, 670
Van91I CCANNNNNTGG 1 cut(s) 992
VpaK11BI GGWCC 1 cut(s) 728
XbaI TCTAGA 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 122
XspI CTAG 5 cut(s) 261, 275, 438, 950, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.