Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004424

Physical Location & Seq

Genomic Coordinates Reverse (-)

39246711 .. 39248794

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0228300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGTTTCGAAATCAAAACGTCCAGACGGAGCTGAAGATAGGATCAGCCAATTACCGGACGATATTCTTGTTCATATACTATCCTATATTCCGACGGTCTATTCTGTCCGAACCACGGTTTTGTCTAAAAGATGGAACAACTTATGGACCTTCGTCCCCACCCTAGACTTGGACCAACAAGATTATTCCGAAGAACACGGTCATCGAACTCGGAATAGTTTTGATAAATTTGCCAAGTTTGTTGATGGTGCACTCTCGTTACACAACTCGTCGACAATCAGAAAGTTTCGTCTTCATATTGAACGCCACATTCAGATTCAAGAGGAAGATGTTTCTCGCATTCGTGACTGGATATGCACTGCCATGAGCCATGAGGTCTGTGAACTTGATCTTTCTATTTGCCCTTATCAGTGGAGAGAGAAGATAGAGTTGAATCTGCCTCGAAGAGTTTTCTTGTGCAAAACTCTGGAGATTTTGAAGGTACATTCAAATTGTATCAACTATCCTCCTACTAAACCCGGTTACTTTCCAAGCCTCAAGTTCGCCAAAGTTACTGCACAATATGGAGATCATTCCTCAATGGGAGAACTTTTTTGTAACTGCCCTGTACTTGAAGAGTTGTCTATCGATGCCCATCTTATGGAAAAAGATGTCAAAATCTGGATCTCTGCACCTGAATTGAAAACTTTAAGGACTAGAATTCTTGTAAATGATGATGAAAGAAAGTTTAAAGGGATTTCTATCAGTGCCCCAAAGCTTGAAAACCTTTTTGTCTATGGCACTGATTTGACAAGGTATGTCTTGCGGAATGCAAAACCCCTCGTCAAAGCCAACATAGAACTCACAAATTTCGAAGAAAATTTGAGTCCAGAGCTTTTGAACCGTGCAACTGCTTTACTTGCAGGAGTTTCCAGTGTTGAATATTTGTACATATCAGGTCCTAATTATGTGGCATGTTCACTGCCTAATTTCTGTAATTTGAAGCAATTGAAGCTCATTCTTTTTGGGTGCTCTTATTTGGAATATGTAATGGAGTTGCTCAAGCGATCACCTAAGCTTGAAGATCTTGTCTTAGATATTGATGTCCGCTCATGGTATGATGAAAAATATGTCGAAGGATACGAGCCCTTCAAGCCACCAGAGATTGTGCCTGTTTGTGTGGTGTCCCACCTTAAGACTGTTTCCATTACTCACATCACGGGACATGATGATCAGTTAGGTATGGTAAAGTATTTGTTAAAGTATGGTCAAGTTCTGAGGAATATGACTATATTCACCTGTGGTGCTCTTCTTTTTAAGACTCGTCATATCACAGAAGAGAAGTTCCAGAGGAAAATTTTGAAGTATCACAAGAGTTCAAACACTAGTGAGATTGAAGTTAAGTATGAAAATAAAGGGAAGTCTTCAGTAAAGAAGTTGAAATCAAACAGACACACACATACATATACATATGCAATGGGAATATATGGGATATATTCCAGTCTCCTCGGCTTTGCAGCTGGATCTGTAACCTTTACTGGCATAGTTATTAATGCTGGAATTGCAAGGAGGAGAAGCAATGCAAGGTGCACTGCGAGGCTGGTGAAGCTGATTTTGAAGAGCAAGGAAGTGGAATACTGTCAAACCACCATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

545

Amino Acids

62.63

Weight (kDa)

8.94

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 50	6.4e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	85 - 427	6.9e-13	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	115 - 261	1.1e-07	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	380 - 424	4.2e-10	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13400
fragaria_vesca	FvH4_4g22520 FvH4_4g22520 FvH4_4g22520 FvH4_4g22520 FvH4_4g22520 FvH4_4g22520 FvH4_4g22520 FvH4_4g22520 FvH4_4g22520
malus_domestica	MD13G1131800.v1.1 MD16G1142100.v1.1
prunus_persica	Prupe.1G213600_v2.0.a1 Prupe.1G213600_v2.0.a1 Prupe.1G213600_v2.0.a1 Prupe.1G213600_v2.0.a1
pyrus_communis	pycom13g11480 pycom16g11260
rosa_chinensis	RchiOBHm_Chr4g0428751
rosa_laevigata	RLG00000007129
rosa_multiflora	Rmu_co8494165.1_g000001 Rmu_sc0010032.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370410
rosa_rugosa	Rorug04G0228000 Rorug04G0228100 Rorug04G0228100 Rorug04G0228200 Rorug04G0228300
rosa_samantha	Rh4AG285400 Rh4BG291400 Rh4DG288500
rosa_wichuraiana	Rw4G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	640
AccBSI	CCGCTC	1 cut(s)	1089
AccI	GTMKAC	1 cut(s)	272
AciI	CCGC	2 cut(s)	805, 1087
AclWI	GGATC	3 cut(s)	50, 671, 1510
AcsI	RAATTY	5 cut(s)	227, 699, 847, 859, 1335
AcuI	CTGAAG	2 cut(s)	54, 1389
AfaI	GTAC	3 cut(s)	483, 609, 929
AfiI	CCNNNNNNNGG	4 cut(s)	55, 115, 169, 640
AflII	CTTAAG	1 cut(s)	1172
AhlI	ACTAGT	1 cut(s)	1364
AluBI	AGCT	7 cut(s)	32, 757, 874, 994, 1057, 1499, 1588
AluI	AGCT	7 cut(s)	32, 757, 874, 994, 1057, 1499, 1588
Alw21I	GWGCWC	4 cut(s)	253, 1013, 1288, 1571
Alw26I	GTCTC	1 cut(s)	1487
Alw44I	GTGCAC	2 cut(s)	249, 1567
AlwI	GGATC	3 cut(s)	50, 671, 1510
ApaLI	GTGCAC	2 cut(s)	249, 1567
ApeKI	GCWGC	1 cut(s)	1496
ApoI	RAATTY	5 cut(s)	227, 699, 847, 859, 1335
AseI	ATTAAT	1 cut(s)	1530
AspS9I	GGNCC	3 cut(s)	147, 172, 938
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	3 cut(s)	1041, 1267, 1594
AsuII	TTCGAA	2 cut(s)	8, 852
AvaII	GGWCC	3 cut(s)	147, 172, 938
BaeGI	GKGCMC	3 cut(s)	253, 751, 1571
BanII	GRGCYC	1 cut(s)	1128
BbsI	GAAGAC	2 cut(s)	284, 1395
Bbv12I	GWGCWC	4 cut(s)	253, 1013, 1288, 1571
BbvI	GCAGC	1 cut(s)	1508
BccI	CCATC	3 cut(s)	126, 239, 642
BciVI	GTATCC	1 cut(s)	1112
BclI	TGATCA	1 cut(s)	1210
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	1487
BcuI	ACTAGT	1 cut(s)	1364
BfaI	CTAG	3 cut(s)	164, 696, 1365
BfrI	CTTAAG	1 cut(s)	1172
BfuI	GTATCC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	1063
BisI	GCNGC	1 cut(s)	1497
BlsI	GCNGC	1 cut(s)	1498
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	3 cut(s)	147, 172, 938
BmgT120I	GGNCC	3 cut(s)	147, 172, 938
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	619
BoxI	GACNNNNGTC	1 cut(s)	152
BpiI	GAAGAC	2 cut(s)	284, 1395
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	1053
Bpu14I	TTCGAA	2 cut(s)	8, 852
BpuEI	CTTGAG	2 cut(s)	521, 1025
BpuMI	CCSGG	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	627
BsaBI	GATNNNNATC	2 cut(s)	633, 740
BsaJI	CCNNGG	2 cut(s)	114, 1486
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 115, 169, 640
Bse1I	ACTGG	4 cut(s)	353, 912, 1479, 1522
Bse3DI	GCAATG	3 cut(s)	1461, 1564, 1629
Bse8I	GATNNNNATC	2 cut(s)	633, 740
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	114, 1486
BseJI	GATNNNNATC	2 cut(s)	633, 740
BseLI	CCNNNNNNNGG	4 cut(s)	55, 115, 169, 640
BseMI	GCAATG	3 cut(s)	1461, 1564, 1629
BseMII	CTCAG	1 cut(s)	1247
BseNI	ACTGG	4 cut(s)	353, 912, 1479, 1522
BseRI	GAGGAG	2 cut(s)	1475, 1564
BseSI	GKGCMC	3 cut(s)	253, 751, 1571
BseXI	GCAGC	1 cut(s)	1508
BsgI	GTGCAG	2 cut(s)	540, 654
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	4 cut(s)	253, 1013, 1288, 1571
BsiSI	CCGG	2 cut(s)	56, 519
BslFI	GGGAC	3 cut(s)	140, 1150, 1215
BslI	CCNNNNNNNGG	4 cut(s)	55, 115, 169, 640
BsmAI	GTCTC	1 cut(s)	1487
BsmFI	GGGAC	3 cut(s)	140, 1150, 1215
BsmI	GAATGC	2 cut(s)	339, 814
Bsp119I	TTCGAA	2 cut(s)	8, 852
Bsp1286I	GDGCHC	6 cut(s)	253, 751, 1013, 1128, 1288, 1571
Bsp1407I	TGTACA	1 cut(s)	927
Bsp143I	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
BspACI	CCGC	2 cut(s)	805, 1087
BspCNI	CTCAG	1 cut(s)	1248
BspDI	ATCGAT	1 cut(s)	627
BspPI	GGATC	3 cut(s)	50, 671, 1510
BspQI	GCTCTTC	2 cut(s)	1293, 1592
BspT104I	TTCGAA	2 cut(s)	8, 852
BspTI	CTTAAG	1 cut(s)	1172
BsrBI	CCGCTC	1 cut(s)	1089
BsrDI	GCAATG	3 cut(s)	1461, 1564, 1629
BsrGI	TGTACA	1 cut(s)	927
BsrI	ACTGG	4 cut(s)	353, 912, 1479, 1522
BssECI	CCNNGG	2 cut(s)	114, 1486
BssMI	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
Bst4CI	ACNGT	6 cut(s)	97, 118, 200, 884, 1180, 1619
Bst6I	CTCTTC	5 cut(s)	439, 609, 1293, 1311, 1592
BstAFI	CTTAAG	1 cut(s)	1172
BstAUI	TGTACA	1 cut(s)	927
BstBI	TTCGAA	2 cut(s)	8, 852
BstDEI	CTNAG	3 cut(s)	1053, 1072, 1256
BstDSI	CCRYGG	1 cut(s)	114
BstKTI	GATC	8 cut(s)	45, 391, 571, 666, 1049, 1066, 1213, 1505
BstMAI	GTCTC	1 cut(s)	1487
BstMBI	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
BstMWI	GCNNNNNNNGC	5 cut(s)	899, 991, 1132, 1541, 1585
BstNSI	RCATGY	1 cut(s)	957
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	517
BstSLI	GKGCMC	3 cut(s)	253, 751, 1571
BstV1I	GCAGC	1 cut(s)	1508
BstV2I	GAAGAC	2 cut(s)	284, 1395
BstX2I	RGATCY	3 cut(s)	663, 1063, 1502
BstYI	RGATCY	3 cut(s)	663, 1063, 1502
Bsu15I	ATCGAT	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	1112
BsuTUI	ATCGAT	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	114
BtsI	GCAGTG	3 cut(s)	357, 959, 1569
BtsIMutI	CAGTG	7 cut(s)	357, 416, 751, 780, 919, 959, 1569
Cfr13I	GGNCC	3 cut(s)	147, 172, 938
ClaI	ATCGAT	1 cut(s)	627
Csp6I	GTAC	3 cut(s)	482, 608, 928
CviAII	CATG	5 cut(s)	364, 371, 954, 1092, 1205
CviQI	GTAC	3 cut(s)	482, 608, 928
DdeI	CTNAG	3 cut(s)	1053, 1072, 1256
DpnI	GATC	8 cut(s)	44, 390, 570, 665, 1048, 1065, 1212, 1504
DpnII	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
DraI	TTTAAA	1 cut(s)	730
Eam1104I	CTCTTC	5 cut(s)	439, 609, 1293, 1311, 1592
EarI	CTCTTC	5 cut(s)	439, 609, 1293, 1311, 1592
Eco24I	GRGCYC	1 cut(s)	1128
Eco47I	GGWCC	3 cut(s)	147, 172, 938
Eco57I	CTGAAG	2 cut(s)	54, 1389
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	1128
FaeI	CATG	5 cut(s)	367, 374, 957, 1095, 1208
FaqI	GGGAC	3 cut(s)	140, 1150, 1215
FatI	CATG	5 cut(s)	363, 370, 953, 1091, 1204
FauNDI	CATATG	1 cut(s)	1450
FbaI	TGATCA	1 cut(s)	1210
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	1497
FriOI	GRGCYC	1 cut(s)	1128
Fsp4HI	GCNGC	1 cut(s)	1497
FspBI	CTAG	3 cut(s)	164, 696, 1365
GluI	GCNGC	1 cut(s)	1497
GsuI	CTGGAG	1 cut(s)	488
HapII	CCGG	2 cut(s)	56, 519
Hin1II	CATG	5 cut(s)	367, 374, 957, 1095, 1208
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	2 cut(s)	755, 1055
HinfI	GANTC	4 cut(s)	316, 433, 865, 1300
HpaII	CCGG	2 cut(s)	56, 519
HphI	GGTGA	3 cut(s)	1041, 1267, 1594
Hpy166II	GTNNAC	5 cut(s)	251, 273, 383, 959, 1569
Hpy188I	TCNGA	7 cut(s)	93, 110, 190, 213, 281, 315, 1257
Hpy188III	TCNNGA	7 cut(s)	23, 320, 344, 467, 661, 869, 1327
Hpy8I	GTNNAC	5 cut(s)	251, 273, 383, 959, 1569
Hpy99I	CGWCG	2 cut(s)	97, 274
HpyAV	CCTTC	4 cut(s)	160, 472, 1109, 1138
HpyCH4III	ACNGT	6 cut(s)	97, 118, 200, 884, 1180, 1619
HpyCH4IV	ACGT	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	5 cut(s)	899, 991, 1132, 1541, 1585
HpyF3I	CTNAG	3 cut(s)	1053, 1072, 1256
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	367, 374, 957, 1095, 1208
Ksp22I	TGATCA	1 cut(s)	1210
Kzo9I	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
LguI	GCTCTTC	2 cut(s)	1293, 1592
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	1508
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	3 cut(s)	164, 696, 1365
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	6 cut(s)	258, 344, 521, 550, 596, 1507
MalI	GATC	8 cut(s)	44, 390, 570, 665, 1048, 1065, 1212, 1504
MbiI	CCGCTC	1 cut(s)	1089
MboI	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	3 cut(s)	663, 1063, 1502
MhlI	GDGCHC	6 cut(s)	253, 751, 1013, 1128, 1288, 1571
MlyI	GAGTC	2 cut(s)	874, 1294
MmeI	TCCRAC	1 cut(s)	116
MseI	TTAA	7 cut(s)	689, 729, 1173, 1238, 1296, 1380, 1530
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	1499
MspCI	CTTAAG	1 cut(s)	1172
MspI	CCGG	2 cut(s)	56, 519
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	986
Mva1269I	GAATGC	2 cut(s)	339, 814
MwoI	GCNNNNNNNGC	5 cut(s)	899, 991, 1132, 1541, 1585
NciI	CCSGG	1 cut(s)	519
NdeI	CATATG	1 cut(s)	1450
NdeII	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
NlaIII	CATG	5 cut(s)	367, 374, 957, 1095, 1208
NmeAIII	GCCGAG	1 cut(s)	1467
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	957
NspV	TTCGAA	2 cut(s)	8, 852
PciSI	GCTCTTC	2 cut(s)	1293, 1592
PcsI	WCGNNNNNNNCGW	1 cut(s)	1119
PctI	GAATGC	2 cut(s)	339, 814
PfeI	GAWTC	2 cut(s)	316, 433
PflMI	CCANNNNNTGG	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	1498
PleI	GAGTC	2 cut(s)	873, 1294
PpsI	GAGTC	2 cut(s)	873, 1294
PpuMI	RGGWCCY	1 cut(s)	938
PshAI	GACNNNNGTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	1530
Psp5II	RGGWCCY	1 cut(s)	938
PspPI	GGNCC	3 cut(s)	147, 172, 938
PspPPI	RGGWCCY	1 cut(s)	938
PsuI	RGATCY	3 cut(s)	663, 1063, 1502
PvuII	CAGCTG	1 cut(s)	1499
RsaI	GTAC	3 cut(s)	483, 609, 929
RsaNI	GTAC	3 cut(s)	482, 608, 928
RseI	CAYNNNNRTG	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	271
SapI	GCTCTTC	2 cut(s)	1293, 1592
SaqAI	TTAA	7 cut(s)	689, 729, 1173, 1238, 1296, 1380, 1530
SatI	GCNGC	1 cut(s)	1497
Sau3AI	GATC	8 cut(s)	42, 388, 568, 663, 1046, 1063, 1210, 1502
Sau96I	GGNCC	3 cut(s)	147, 172, 938
SchI	GAGTC	2 cut(s)	874, 1294
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	6 cut(s)	253, 751, 1013, 1128, 1288, 1571
SfaNI	GCATC	1 cut(s)	619
SfuI	TTCGAA	2 cut(s)	8, 852
SinI	GGWCC	3 cut(s)	147, 172, 938
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	3 cut(s)	536, 1040, 1172
SmoI	CTYRAG	3 cut(s)	536, 1040, 1172
SpeI	ACTAGT	1 cut(s)	1364
SsiI	CCGC	2 cut(s)	805, 1087
SspI	AATATT	1 cut(s)	923
SspMI	CTAG	3 cut(s)	164, 696, 1365
StyD4I	CCNGG	1 cut(s)	517
TaaI	ACNGT	6 cut(s)	97, 118, 200, 884, 1180, 1619
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	7 cut(s)	8, 205, 272, 442, 627, 852, 1113
TatI	WGTACW	2 cut(s)	607, 927
TfiI	GAWTC	2 cut(s)	316, 433
Tru1I	TTAA	7 cut(s)	689, 729, 1173, 1238, 1296, 1380, 1530
Tru9I	TTAA	7 cut(s)	689, 729, 1173, 1238, 1296, 1380, 1530
TscAI	CASTG	7 cut(s)	364, 416, 751, 787, 919, 966, 1576
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	1496
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	5 cut(s)	62, 284, 732, 1116, 1401
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	7 cut(s)	364, 416, 751, 787, 919, 966, 1576
Van91I	CCANNNNNTGG	1 cut(s)	640
Vha464I	CTTAAG	1 cut(s)	1172
VneI	GTGCAC	2 cut(s)	249, 1567
VpaK11BI	GGWCC	3 cut(s)	147, 172, 938
VspI	ATTAAT	1 cut(s)	1530
XapI	RAATTY	5 cut(s)	227, 699, 847, 859, 1335
XceI	RCATGY	1 cut(s)	957
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	3 cut(s)	164, 696, 1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.