Rorug04G0258100

Cell wall vacuolar inhibitor of fructosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015605
Physical Location & Seq
Forward (+)
43137680 .. 43138357
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0258100.1

Sequence Viewer

Length: 678 bp
ATGGACGAAGCCGGGCGACAAGGCATGGCGAGTTTCTCACTGCTAATCGGTGTGGGCTTGTCGAGATCTGGGTTTATGCCTGGATATGGCCGACAAATGTTGAGGTTGGTGTGGTTTGCGGCGTGGATGGAGTCTTTCCGGCGGTGCGAGTTCGACGGGACAGACTTATGGTGGTGGTCTGCTGGCGGGTCATCTGAAAAGGAGGAAGTTGTTTGCGGCGGCTGGTCTATGTTTTTGGTTAAAGTAGTTTTCTTGGTTAGGATTTCGACTAGTGTTTTGGTTAGGTTTTTCTGGTTTTTATCACGTCCCTACTCTGTTGAGCTAGGGTTGGGTCAAATTGAGGTGCCATGGATGTGGTGTTTTTCCTGGGGACGAATTGGTTTATTATCGGTTTTATCTTATGGTCAATGTGTTGACGAGCGATCCTTGCACGTGGTCTGGCATCTTTGGGACACGGTGTGGAAGAGGGCGTTGGTTGTTTTGGCGGTTGTCTATGAGGTGGTATCGATATTCTCGGGATTCTCGATAGCCCGAGTCGTTAGGTGGTATAGGTGGTTAGGGGTTGGGCCCCTTCGGCTCATGGAAGTCATTTATAGTGATGGACCCGTAACTGGTTTAGGTTTTAGGGAGGAGAGTGGGGAATTCTTGTCCACCACCGGTCATTCCCGTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

225

Amino Acids

25.78

Weight (kDa)

7.69

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AciI CCGC 6 cut(s) 119, 142, 186, 216, 219, 485
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 641
AcvI CACGTG 1 cut(s) 433
AdeI CACNNNGTG 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 86, 611
AgeI ACCGGT 1 cut(s) 656
AhlI ACTAGT 1 cut(s) 269
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 2 cut(s) 79, 365
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AlwI GGATC 1 cut(s) 417
Ama87I CYCGRG 2 cut(s) 514, 531
AoxI GGCC 2 cut(s) 88, 566
ApaI GGGCCC 1 cut(s) 570
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AsiGI ACCGGT 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 566, 567, 602
AsuC2I CCSGG 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 514, 531
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 570
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 570
BbrPI CACGTG 1 cut(s) 433
BccI CCATC 2 cut(s) 121, 593
BciT130I CCWGG 2 cut(s) 81, 367
BcnI CCSGG 1 cut(s) 13
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 270, 323
BglI GCCNNNNNGGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 65
BisI GCNGC 3 cut(s) 120, 217, 220
BlsI GCNGC 3 cut(s) 121, 218, 221
Bme1390I CCNGG 3 cut(s) 13, 81, 367
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 2 cut(s) 514, 531
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 566, 567, 602
BmiI GGNNCC 4 cut(s) 345, 568, 569, 604
BmrFI CCNGG 3 cut(s) 13, 81, 367
BmsI GCATC 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 506
BsaAI YACGTR 1 cut(s) 433
BsaJI CCNNGG 2 cut(s) 347, 366
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 611
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 616
BseBI CCWGG 2 cut(s) 81, 367
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 2 cut(s) 347, 366
BseGI GGATG 2 cut(s) 132, 357
BseLI CCNNNNNNNGG 2 cut(s) 86, 611
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 570
BshFI GGCC 2 cut(s) 90, 568
BshNI GGYRCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 506
BsiHKCI CYCGRG 2 cut(s) 514, 531
BsiSI CCGG 3 cut(s) 12, 139, 657
BslFI GGGAC 4 cut(s) 172, 291, 384, 464
BslI CCNNNNNNNGG 2 cut(s) 86, 611
BsmFI GGGAC 4 cut(s) 172, 291, 384, 464
BsnI GGCC 2 cut(s) 90, 568
BsoBI CYCGRG 2 cut(s) 514, 531
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 2 cut(s) 65, 422
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 6 cut(s) 119, 142, 186, 216, 219, 485
BspANI GGCC 2 cut(s) 90, 568
BspDI ATCGAT 1 cut(s) 506
BspLI GGNNCC 4 cut(s) 345, 568, 569, 604
BspPI GGATC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 347, 366
BssMI GATC 2 cut(s) 65, 422
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 81, 367
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 132, 357
BstKTI GATC 2 cut(s) 68, 425
BstMBI GATC 2 cut(s) 65, 422
BstMWI GCNNNNNNNGC 2 cut(s) 427, 574
BstNI CCWGG 2 cut(s) 81, 367
BstSCI CCNGG 3 cut(s) 11, 79, 365
BstSLI GKGCMC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 1 cut(s) 65
Bsu15I ATCGAT 1 cut(s) 506
BsuRI GGCC 2 cut(s) 90, 568
BsuTUI ATCGAT 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 347
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 132, 357
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 3 cut(s) 566, 567, 602
ClaI ATCGAT 1 cut(s) 506
CspAI ACCGGT 1 cut(s) 656
CviAII CATG 3 cut(s) 25, 348, 580
CviJI RGCY 8 cut(s) 11, 57, 90, 222, 322, 530, 568, 577
CviKI_1 RGCY 8 cut(s) 11, 57, 90, 222, 322, 530, 568, 577
DpnI GATC 2 cut(s) 67, 424
DpnII GATC 2 cut(s) 65, 422
DraIII CACNNNGTG 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 433
Eco88I CYCGRG 2 cut(s) 514, 531
EcoO109I RGGNCCY 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 79, 365
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 3 cut(s) 28, 351, 583
FaqI GGGAC 4 cut(s) 172, 291, 384, 464
FatI CATG 3 cut(s) 24, 347, 579
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 120, 217, 220
FokI GGATG 2 cut(s) 139, 364
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 3 cut(s) 120, 217, 220
FspBI CTAG 2 cut(s) 270, 323
GluI GCNGC 3 cut(s) 120, 217, 220
HaeIII GGCC 2 cut(s) 90, 568
HapII CCGG 3 cut(s) 12, 139, 657
Hin1II CATG 3 cut(s) 28, 351, 583
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 3 cut(s) 131, 519, 534
HpaII CCGG 3 cut(s) 12, 139, 657
Hpy166II GTNNAC 2 cut(s) 415, 651
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 63, 516, 523
Hpy8I GTNNAC 2 cut(s) 415, 651
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 2 cut(s) 304, 432
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 427, 574
HpySE526I ACGT 2 cut(s) 304, 432
Hsp92II CATG 3 cut(s) 28, 351, 583
Kzo9I GATC 2 cut(s) 65, 422
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 270, 323
MaeII ACGT 2 cut(s) 304, 432
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 67, 424
MboI GATC 2 cut(s) 65, 422
MboII GAAGA 1 cut(s) 475
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 3 cut(s) 336, 375, 641
MlyI GAGTC 2 cut(s) 140, 543
MnlI CCTC 6 cut(s) 96, 196, 334, 459, 490, 622
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 352
MspI CCGG 3 cut(s) 12, 139, 657
MspR9I CCNGG 3 cut(s) 13, 81, 367
MvaI CCWGG 2 cut(s) 81, 367
MwoI GCNNNNNNNGC 2 cut(s) 427, 574
NciI CCSGG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 347
NdeII GATC 2 cut(s) 65, 422
NlaIII CATG 3 cut(s) 28, 351, 583
NlaIV GGNNCC 4 cut(s) 345, 568, 569, 604
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PfeI GAWTC 1 cut(s) 519
PinAI ACCGGT 1 cut(s) 656
PkrI GCNGC 3 cut(s) 121, 218, 221
PleI GAGTC 2 cut(s) 139, 542
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
PpsI GAGTC 2 cut(s) 139, 542
Ppu21I YACGTR 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 79, 365
PspCI CACGTG 1 cut(s) 433
PspGI CCWGG 2 cut(s) 79, 365
PspN4I GGNNCC 4 cut(s) 345, 568, 569, 604
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 566, 567, 602
PsuI RGATCY 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 3 cut(s) 120, 217, 220
Sau3AI GATC 2 cut(s) 65, 422
Sau96I GGNCC 3 cut(s) 566, 567, 602
SchI GAGTC 2 cut(s) 140, 543
ScrFI CCNGG 3 cut(s) 13, 81, 367
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 352
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 3 cut(s) 336, 375, 641
SsiI CCGC 6 cut(s) 119, 142, 186, 216, 219, 485
SspMI CTAG 2 cut(s) 270, 323
StyD4I CCNGG 3 cut(s) 11, 79, 365
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 2 cut(s) 307, 435
TaqI TCGA 5 cut(s) 62, 153, 266, 506, 524
TasI AATT 3 cut(s) 336, 375, 641
TauI GCSGC 3 cut(s) 122, 219, 222
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 45
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 1 cut(s) 641
XspI CTAG 2 cut(s) 270, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.