Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015605

Physical Location & Seq

Genomic Coordinates Reverse (-)

48547561 .. 48547890

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAATGACGTCGTACTCAGGACCAAAGCACAAGAAGTTCATACCAAGATCGATCTGCTTATTAAGCAGGGCACTATACCACAGTCATTACTCACATGCGCACAGACTTATAGCCTAATTATAAATGATAAAATCAAAGCAGTCAATGAAGGATTGAAGGATGATCAGCCTTTGAAGGCGGAGCAAGCCATGGATGATACTGTCTCTTTGCTCAATGACTGTAACAGTGGTTTGGAACATTCTTTGCCCGGCACTCCTCTGATTGGCATGAACACCAATGTGGCTGATCTTGCGACTGTGACTAAAGCAATAGTGAAACAATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

109

Amino Acids

11.79

Weight (kDa)

5.17

Isoelectric Point (pI)

15.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24940
rosa_chinensis	RchiOBHm_Chr4g0432391
rosa_laevigata	RLG00000006847
rosa_multiflora	Rmu_sc0001084.1_g000033 Rmu_sc0016445.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373510 Rroxscaffold_5G00373840
rosa_rugosa	Rorug04G0258100
rosa_samantha	Rh4AG311300 Rh4BG318400 Rh4BG321600 Rh4CG333700 Rh4CG336700 Rh4DG313300 Rh4DG317200
rosa_wichuraiana	Rw4G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AatII	GACGTC	1 cut(s)	12
Acc16I	TGCGCA	1 cut(s)	100
AciI	CCGC	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	157, 175
AleI	CACNNNNGTG	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	166, 199
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	48, 52, 163, 286
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	4 cut(s)	48, 52, 163, 286
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	5 cut(s)	84, 202, 221, 227, 298
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	166, 199
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	4 cut(s)	51, 55, 166, 289
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	4 cut(s)	48, 52, 163, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 185, 290
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	166, 199
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	3 cut(s)	96, 190, 268
CviJI	RGCY	4 cut(s)	114, 169, 188, 284
CviKI_1	RGCY	4 cut(s)	114, 169, 188, 284
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	4 cut(s)	50, 54, 165, 288
DpnII	GATC	4 cut(s)	48, 52, 163, 286
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	99, 193, 271
FaiI	YATR	7 cut(s)	42, 77, 97, 111, 122, 191, 269
FatI	CATG	3 cut(s)	95, 189, 267
FbaI	TGATCA	1 cut(s)	163
FokI	GGATG	2 cut(s)	173, 206
FspAI	RTGCGCAY	1 cut(s)	100
FspI	TGCGCA	1 cut(s)	100
GlaI	GCGC	1 cut(s)	100
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	99, 193, 271
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	143, 151, 169
HpyCH4III	ACNGT	5 cut(s)	84, 202, 221, 227, 298
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 185, 290
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	99, 193, 271
HspAI	GCGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	48, 52, 163, 286
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	4, 53, 262
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	221, 298
MalI	GATC	4 cut(s)	50, 54, 165, 288
MboI	GATC	4 cut(s)	48, 52, 163, 286
MfeI	CAATTG	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	117, 320
MnlI	CCTC	1 cut(s)	267
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	64, 185, 290
NciI	CCSGG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	48, 52, 163, 286
NlaIII	CATG	3 cut(s)	99, 193, 271
NmuCI	GTSAC	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	100
NspI	RCATGY	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	21
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	48, 52, 163, 286
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	1 cut(s)	12
SinI	GGWCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	117, 320
SsiI	CCGC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	5 cut(s)	84, 202, 221, 227, 298
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	117, 320
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	4 cut(s)	17, 29, 162, 284
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	21
XceI	RCATGY	1 cut(s)	99
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.