Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014721

Physical Location & Seq

Genomic Coordinates Forward (+)

43411141 .. 43417321

Gene Structure 6181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3939 bp

ATGGAAGAAACCATAACCCGAATAGTCACAGAGCTCGAAGACCTCCGCCACCTCGAAAACCCCACCAACACCCAATCCCAACCCATCTCCAATTCCACTCTCTCCGATCTCCAAACCCTCTTCGACGCCGCCGACAATGACCCGGACCCCATGGACCGCTTCTCCGACGAGCTCGCCGCCAAGTCCCTCTCCCTCTCCAATCTGGTCCGCCCCATCGCCGCCGCCATGGATTCCGGCCCGGCCCATTTCACCCTCTCCGCCTCCAAGCTCTACCTCTCTCTCCTCCTCTCCCCCAATTCCCCGGTCTGCACTCTCTTCACCCCCATGGCGTTCTTCTCTCTCCTCCAGTCGATTCGCCGGTCGCTGAAGCACCGCCGCGCCGAATCGGGTCACGGCGAGCCCGGCACCGGGTCCGGTAACGCGGCCGCTAGGAAGCGGAAGGGAAGAGGCAAAGGTAAGGGTTTGAAGAACAGTGAGGATTGCGAAGGCGAAGAGAGGGAGTTTGATGTTAGGGTTTTGTTTTCGGTGCTTGAAAAATTGGAACTTGTGATGGATTTGATTCATTTGGATCGGTTTCCGGATAGTTTGAAGTCGTTGGTTCAAACCGTGGCTGAAATTCCAGTCATGGGGTTTGAAGTGTGTGGCAATTCTGGTAATTATAACAAATTGACTGATTTGTGCTCTAGGGTTTTGCTTAAGGTGTTCAAGCCTGAGCATGGAGACCATGCCAGCATTGCAGCTGAGGTGTTCAAGTCATTGGCGCCGATGATTCTTCTGCATAAATCGCAGGTGAGGATATTTGCGTTGAGTTTTGTGGGGAATCAGATGATGGGTGTGGCTAAGAATCTTGAGGGGGTGAAGAAAGCAATGGTGAATTTTCTGTGGTACTTGGTCCACAAGGCGCCAGATAAGTCTGAGCCTCGGGCTTTGGCTGTCGAGTCTATAATGGAGATTGTTAGAGTTATGGAGGTTCAGGAGCAAGTTGTGTTTGTGGAGTATGTGGTGAAGATGACTCAGGGGAAGGCCAGGTTGAGGCTTTTGGCTGTTGACCTTATTCTGGTGCTGGTTACATCTTTGAGAGATGTGATGGGTTTGAATTCGGAGAGTGAAGTGAGGGATTCGTTGGGTTGGAAATGCTTGGAGGGTTTGATTCAGCGCTGTTCGGATGCAATGGCTGGGATTCGAGCTCGTGCTTTGTCAAATTTGTCACAGCTGGTTGGCTTCTTGTCAGGTGATGATAGGAGCCGGGAAGTGTTGAAAGAAGTTATGGGGTTTGGTGATGCAATGGATGAAAGGCAGGAGGGCTGGATGAATGAGATTTTGAGGGCAAGGTGTATGGATGAGAAGGCAGCTGTAAGGAAGGCTGCACTTCTTTTGGTTACCAAGTTGATGGCCATTCTTGGTAGTGGCTTTGATAGAGACTTGATCAAGACTATGGGCATGGCTTGTTCTGATCCACTTGTTAGCATACGCAAAGCGGCAATTTCAGCTCTTTCAGTGGCTTTTAGAACATTCCTGGATGATAGCGTGGCTACTGAGTGGCTACATTCTGTTCCAGCTTTAATAACTGATAATGAGTCTAGCATTCAAGAAGAATGTGAAAACTTGTTTGTAGAGCTGGTATTGGAAAGGGTATCTGCAGTTGGTTCTGAAATCAATACTGACTCAGTACTTCCTGAAGGCATTTTAAGCCTTTTGAAAGAGATTTGCAATGGAGAAGTGGCACCTTGGGTGAAGAAAATTTTAACAAACTTGGGAAAGAAGAATCGACTGAAGCACAAATTTGCTACTGCACTTCAGAGTATCATAAGGACATCTGAGTCTCTCTGGCTCAGTCAATCCATGCCTATAGAGAAATGGACAGCCCCACCAGGTTCTTGGTTTCTTCTGTCAGAGGTGTCAGCATACCTTGCAAAAGCAGTTGACTGGGAGTTTCTCCGTCATCATTGGCAGCTTTTTGACAAGCATGGAGTGGGAGGGGAGATTCAGAGTCCACTTCCACAGGGATATGCACATGAAGAGGGAGGGGGTATAGAATCCAGTTCTGTTGCTTGGGCTGGGGATCGTGTTTTTCTCTTACAGACTATTTCTAATGTATCTGTTGAGCTGCCTTCTGAAGTTGGTGCAGAGTTAGCTCATGACTTGCTTAAAAGAATTGAAAATTTTAACATGCATTCAACAGAGCGGAAGGTTTCAGATCCAGAGCAGGCTGATACACTTGTTAAAAGATGCGTACATCAGATTGCCTCAAAAGCTTCCAAGATATTAGATAAGTATATATCCAAGGAGTCAAATACAACCCGAAAAGGTGGCTTCTTTACGCCACCTATAAGTGGGAGTAGAATGGGCAAGAGAGCCATAACCATGTCCAAGTCTTTGTCAAAAGTAGTGACAGCAGTCTATACAATTGGGTCTTTGGTTATTATTTGTCCATCTGCTGATATGAGCACCACCATTCCACTACTATATACCATCATCACTTCTGGGAATTCTGATCCAAAAGTCAATAAACTAGCTGGCTCTATAGGATCTCTAAAGCAGACAGCACCTTCTTTGTACATTCAAGCATGGTTGACTATGGGGAAGATTTGCCTTACAGATGAAAAAATTGCAAAGACGTATATTCCTCTCTTTGTGCAGGAACTTGAAAAGAGTGATTGTGCAGCCCTTCGCAACAATCTGGTAGTTGTGATGGCAGATTTTTGCATTCGTCATACTTCTTTAGTTGATAGTTATATACCAAGGATCACAAAATGCCTCCGTGATCCATGCGAACTTGTAAGAAGGCAGACATTTATACTGCTCTCAAGATTGTTGCAGAGGGATTATGTGAAGTGGAGAGGAGTTCTTTTCCTGAGATTTCTCTTGTCACTTGTTGATGAGTCAGAAAAGATAAAGCAGCTTGCCACCTTTCTTTTCAGCAATATCTTGAAAGCTAAGGCGCCTCTTCTCGGATATAACAGTTTTGTAGAAGCAATTTTTGTTCTGAATGACTGCCGTGCCCACAAGGGACATACTGGTGCTCAGGGTTCACGAGCAGAGAGCCGCCTTTTTTCCATTAGGGGAAATGATGAAGCTTCGAGGTCTAGAAGAATGCACATCTATGTTTCTTTGCTGAAACAAATGGCTCCAGAGCACTTATTGCAAACGTTTGTAAAGTTATGTACAGAGATCCTTGCTGCAGCATCTGATGGCATGCTCAATATAGATGATATTACTGGGCAGGCTGTTCTGCAGGATGCTTTCCAAATTATTGCCTGCAAAGAAATCCGAATACCATCCAACCGTGGGTTATCATCTGACACTGGAGATATTGATGAAGAAGGTGGTGATAATGGTGGAGCAGCTGCTAAGGGAAGGGCAATAACTCAAGCACTCAAAAAGGGCCTCATCCAAAGCACAATACCCATCTTTATAGAGCTGAAGCGGCTATTGGAAAGCAAAAACAGCCCCCTTGTAGGCTCCCTCATGGAATGCCTCCGCATCATCCTCAAGGATTACAAAAATGAGATCGAAGACATATTAGTTGCTGATAAGCAGCTCCAGAAAGAGCTGATATATGACATGCAGAAGTATGAAAAGGCAAAGGTCAAGTCTACAGCTGCCGAGACTGTTGCCAACCATCAAAGAACAGTTAGCTTCAACTCTCCCGGTATATCCAAGATTGCAAGCGTGAGACAGGCGCATAACAAATCCATTGGCAGATTGCAAGGCGACGTGAGATTAGCTTCGGCAATGGGAGATGTAGCTGCTGAAGCCATAGCAAGGTCAGTGCTCAAGGACATGAACAAGGGGAGACAGACACCACCTCTCAGCTCTTTAAGCGTGCCTAAGCTCAAGACCTGCGAGGGAGGGCAGAGCTCTCGAAGTGGTGTGCCCTTGGATGTATTGGAATCTGTAAGAAGAAGACAGAATTTTGACTTTGTTGAGGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001704 GO:0001706 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007369 GO:0007492 GO:0008150 GO:0008152 GO:0008330 GO:0009653 GO:0009790 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033549 GO:0033673 GO:0035335 GO:0035970 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048598 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0060255 GO:0065007 GO:0065009 GO:0070372 GO:0070373 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990439

KEGG Pathways

Metabolic & Signaling

ko04010 ko04726 ko05418 map04010 map04726 map05418

Pfam Domains

Protein Families

DSPc Gelsolin

Protein Analysis

1312

Amino Acids

144.98

Weight (kDa)

8.34

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cnd1	PF12717	890 - 1064	1e-18	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25430 FvH4_4g25430
malus_domestica	MD13G1103000.v1.1 MD16G1103200.v1.1
prunus_persica	Prupe.1G242800_v2.0.a1
pyrus_communis	pycom16g08800
rosa_chinensis	RchiOBHm_Chr4g0432741
rosa_laevigata	RLG00000006816
rosa_multiflora	Rmu_co8494851.1_g000001 Rmu_sc0012180.1_g000009
rosa_roxburghii	Rroxscaffold_5G00374200
rosa_rugosa	Rorug04G0262100
rosa_samantha	Rh4AG316600 Rh4BG324700 Rh4CG339700 Rh4DG319900
rosa_wichuraiana	Rw4G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AarI	CACCTGC	1 cut(s)	778
AasI	GACNNNNNNGTC	1 cut(s)	1819
Acc36I	ACCTGC	2 cut(s)	778, 3851
AccB1I	GGYRCC	5 cut(s)	404, 760, 901, 1723, 2941
AccBSI	CCGCTC	1 cut(s)	2185
AccI	GTMKAC	1 cut(s)	3596
AccII	CGCG	2 cut(s)	378, 422
AccIII	TCCGGA	1 cut(s)	577
AclI	AACGTT	1 cut(s)	3149
AclWI	GGATC	9 cut(s)	576, 1448, 2070, 2192, 2489, 2536, 2753, 2759, 3166
AcoI	YGGCCR	2 cut(s)	423, 1392
AcsI	RAATTY	9 cut(s)	615, 874, 1096, 1201, 1740, 1781, 2161, 2488, 3913
AcuI	CTGAAG	7 cut(s)	386, 1698, 1781, 1793, 2136, 3443, 3774
AcyI	GRCGYC	4 cut(s)	126, 761, 902, 2942
AfaI	GTAC	5 cut(s)	887, 1671, 2235, 2558, 3166
AfeI	AGCGCT	1 cut(s)	1157
AflII	CTTAAG	1 cut(s)	695
AjiI	CACGTC	1 cut(s)	3718
AjnI	CCWGG	3 cut(s)	1025, 1515, 1870
AjuI	GAANNNNNNNTTGG	2 cut(s)	3416, 3448
Alw21I	GWGCWC	9 cut(s)	36, 174, 683, 1189, 2450, 3025, 3138, 3777, 3863
Alw26I	GTCTC	6 cut(s)	714, 1413, 1827, 3602, 3670, 3790
AlwI	GGATC	9 cut(s)	576, 1448, 2070, 2192, 2489, 2536, 2753, 2759, 3166
AlwNI	CAGNNNCTG	1 cut(s)	3188
Ama87I	CYCGRG	1 cut(s)	921
Aor13HI	TCCGGA	1 cut(s)	577
Aor51HI	AGCGCT	1 cut(s)	1157
AoxI	GGCC	6 cut(s)	235, 240, 423, 1023, 1392, 3385
ApoI	RAATTY	9 cut(s)	615, 874, 1096, 1201, 1740, 1781, 2161, 2488, 3913
ArsI	GACNNNNNNTTYG	2 cut(s)	3578, 3610
AspLEI	GCGC	6 cut(s)	380, 763, 904, 1158, 2944, 3685
AspS9I	GGNCC	8 cut(s)	145, 154, 205, 236, 241, 411, 892, 3385
AsuC2I	CCSGG	7 cut(s)	143, 239, 302, 402, 409, 1247, 3651
AvaI	CYCGRG	1 cut(s)	921
AvaII	GGWCC	5 cut(s)	145, 154, 205, 411, 892
BaeGI	GKGCMC	2 cut(s)	3004, 3879
BaeI	ACNNNNGTAYC	2 cut(s)	2205, 2238
BalI	TGGCCA	1 cut(s)	1394
BanI	GGYRCC	5 cut(s)	404, 760, 901, 1723, 2941
BanII	GRGCYC	5 cut(s)	36, 174, 402, 1189, 3863
BauI	CACGAG	2 cut(s)	1188, 3033
BbsI	GAAGAC	3 cut(s)	45, 3522, 3913
Bbv12I	GWGCWC	9 cut(s)	36, 174, 683, 1189, 2450, 3025, 3138, 3777, 3863
BbvCI	CCTCAGC	1 cut(s)	741
BceAI	ACGGC	2 cut(s)	409, 2982
BcgI	CGANNNNNNTGC	4 cut(s)	3596, 3630, 3845, 3879
BciT130I	CCWGG	3 cut(s)	1027, 1517, 1872
BclI	TGATCA	1 cut(s)	1425
BcnI	CCSGG	7 cut(s)	143, 239, 302, 402, 409, 1247, 3651
BcoDI	GTCTC	6 cut(s)	714, 1413, 1827, 3602, 3670, 3790
BfaI	CTAG	5 cut(s)	429, 684, 1581, 2513, 3087
BfmI	CTRYAG	6 cut(s)	1638, 1848, 2523, 3180, 3233, 3597
BfoI	RGCGCY	4 cut(s)	764, 905, 1159, 2945
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	2 cut(s)	778, 3851
BmcAI	AGTACT	1 cut(s)	1671
Bme18I	GGWCC	5 cut(s)	145, 154, 205, 411, 892
BmeT110I	CYCGRG	1 cut(s)	921
BmgBI	CACGTC	1 cut(s)	3718
BmgT120I	GGNCC	8 cut(s)	145, 154, 205, 236, 241, 411, 892, 3385
BmrI	ACTGGG	2 cut(s)	1936, 3228
BmsI	GCATC	6 cut(s)	1156, 1270, 2219, 3194, 3229, 3492
BmuI	ACTGGG	2 cut(s)	1936, 3228
BoxI	GACNNNNGTC	1 cut(s)	2396
BpiI	GAAGAC	3 cut(s)	45, 3522, 3913
BpmI	CTGGAG	4 cut(s)	329, 3114, 3327, 3527
Bpu10I	CCTNAGC	6 cut(s)	711, 741, 2937, 3024, 3351, 3831
BpuEI	CTTGAG	6 cut(s)	869, 2791, 3354, 3476, 3761, 3821
BpuMI	CCSGG	7 cut(s)	143, 239, 302, 402, 409, 1247, 3651
BsaHI	GRCGYC	4 cut(s)	126, 761, 902, 2942
BsaI	GGTCTC	1 cut(s)	714
BsaWI	WCCGGW	2 cut(s)	413, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	7 cut(s)	346, 620, 1931, 2040, 3022, 3223, 3310
Bse3DI	GCAATG	6 cut(s)	732, 873, 1176, 1290, 1717, 3741
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	3 cut(s)	1027, 1517, 1872
BseMI	GCAATG	6 cut(s)	732, 873, 1176, 1290, 1717, 3741
BseNI	ACTGG	7 cut(s)	346, 620, 1931, 2040, 3022, 3223, 3310
BseRI	GAGGAG	4 cut(s)	272, 275, 332, 2856
BseSI	GKGCMC	2 cut(s)	3004, 3879
BseX3I	CGGCCG	1 cut(s)	423
BseYI	CCCAGC	2 cut(s)	1175, 2057
BsgI	GTGCAG	6 cut(s)	292, 1350, 1776, 2145, 2657, 2682
Bsh1236I	CGCG	2 cut(s)	378, 422
Bsh1285I	CGRYCG	2 cut(s)	362, 426
BshFI	GGCC	6 cut(s)	237, 242, 425, 1025, 1394, 3387
BshNI	GGYRCC	5 cut(s)	404, 760, 901, 1723, 2941
BsiEI	CGRYCG	2 cut(s)	362, 426
BsiHKAI	GWGCWC	9 cut(s)	36, 174, 683, 1189, 2450, 3025, 3138, 3777, 3863
BsiHKCI	CYCGRG	1 cut(s)	921
BslFI	GGGAC	2 cut(s)	169, 3024
BsmAI	GTCTC	6 cut(s)	714, 1413, 1827, 3602, 3670, 3790
BsmFI	GGGAC	2 cut(s)	169, 3024
BsmI	GAATGC	5 cut(s)	1584, 2173, 2706, 3099, 3479
BsnI	GGCC	6 cut(s)	237, 242, 425, 1025, 1394, 3387
Bso31I	GGTCTC	1 cut(s)	714
BsoBI	CYCGRG	1 cut(s)	921
Bsp13I	TCCGGA	1 cut(s)	577
Bsp1407I	TGTACA	2 cut(s)	2556, 3164
Bsp19I	CCATGG	3 cut(s)	150, 225, 324
BspANI	GGCC	6 cut(s)	237, 242, 425, 1025, 1394, 3387
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	378, 422
BspHI	TCATGA	1 cut(s)	2137
BspMAI	CTGCAG	3 cut(s)	1642, 3184, 3237
BspMI	ACCTGC	2 cut(s)	778, 3851
BspPI	GGATC	9 cut(s)	576, 1448, 2070, 2192, 2489, 2536, 2753, 2759, 3166
BspT107I	GGYRCC	5 cut(s)	404, 760, 901, 1723, 2941
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	714
BsrBI	CCGCTC	1 cut(s)	2185
BsrDI	GCAATG	6 cut(s)	732, 873, 1176, 1290, 1717, 3741
BsrFI	RCCGGY	1 cut(s)	357
BsrGI	TGTACA	2 cut(s)	2556, 3164
BsrI	ACTGG	7 cut(s)	346, 620, 1931, 2040, 3022, 3223, 3310
BssAI	RCCGGY	1 cut(s)	357
BssNI	GRCGYC	4 cut(s)	126, 761, 902, 2942
BssSI	CACGAG	2 cut(s)	1188, 3033
BssT1I	CCWWGG	7 cut(s)	150, 225, 324, 1727, 2283, 2741, 3879
Bst2BI	CACGAG	2 cut(s)	1188, 3033
Bst2UI	CCWGG	3 cut(s)	1027, 1517, 1872
Bst4CI	ACNGT	6 cut(s)	473, 607, 2963, 3287, 3613, 3634
Bst6I	CTCTTC	6 cut(s)	125, 320, 439, 486, 2013, 2952
BstACI	GRCGYC	4 cut(s)	126, 761, 902, 2942
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	2 cut(s)	1910, 3142
BstAUI	TGTACA	2 cut(s)	2556, 3164
BstDSI	CCRYGG	5 cut(s)	150, 225, 324, 606, 3286
BstEII	GGTNACC	1 cut(s)	1378
BstFNI	CGCG	2 cut(s)	378, 422
BstH2I	RGCGCY	4 cut(s)	764, 905, 1159, 2945
BstHHI	GCGC	6 cut(s)	380, 763, 904, 1158, 2944, 3685
BstMAI	GTCTC	6 cut(s)	714, 1413, 1827, 3602, 3670, 3790
BstMCI	CGRYCG	2 cut(s)	362, 426
BstNI	CCWGG	3 cut(s)	1027, 1517, 1872
BstNSI	RCATGY	3 cut(s)	2173, 3199, 3568
BstPAI	GACNNNNGTC	1 cut(s)	2396
BstPI	GGTNACC	1 cut(s)	1378
BstSFI	CTRYAG	6 cut(s)	1638, 1848, 2523, 3180, 3233, 3597
BstSLI	GKGCMC	2 cut(s)	3004, 3879
BstUI	CGCG	2 cut(s)	378, 422
BstV2I	GAAGAC	3 cut(s)	45, 3522, 3913
BstX2I	RGATCY	3 cut(s)	2197, 2528, 3171
BstXI	CCANNNNNNTGG	2 cut(s)	1390, 1878
BstYI	RGATCY	3 cut(s)	2197, 2528, 3171
BstZI	CGGCCG	1 cut(s)	423
BsuRI	GGCC	6 cut(s)	237, 242, 425, 1025, 1394, 3387
BtgI	CCRYGG	5 cut(s)	150, 225, 324, 606, 3286
BtgZI	GCGATG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	3718
BtsIMutI	CAGTG	4 cut(s)	478, 1503, 3303, 3777
BveI	ACCTGC	2 cut(s)	778, 3851
CaiI	CAGNNNCTG	1 cut(s)	3188
CciI	TCATGA	1 cut(s)	2137
CciNI	GCGGCCGC	1 cut(s)	423
CfoI	GCGC	6 cut(s)	380, 763, 904, 1158, 2944, 3685
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	8 cut(s)	145, 154, 205, 236, 241, 411, 892, 3385
CseI	GACGC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	1870
Csp6I	GTAC	5 cut(s)	886, 1670, 2234, 2557, 3165
CviQI	GTAC	5 cut(s)	886, 1670, 2234, 2557, 3165
DinI	GGCGCC	3 cut(s)	762, 903, 2943
DrdI	GACNNNNNNGTC	1 cut(s)	1819
DseDI	GACNNNNNNGTC	1 cut(s)	1819
EaeI	YGGCCR	2 cut(s)	423, 1392
EagI	CGGCCG	1 cut(s)	423
Eam1104I	CTCTTC	6 cut(s)	125, 320, 439, 486, 2013, 2952
EarI	CTCTTC	6 cut(s)	125, 320, 439, 486, 2013, 2952
EciI	GGCGGA	3 cut(s)	35, 197, 247
Ecl136II	GAGCTC	4 cut(s)	34, 172, 1187, 3861
EclXI	CGGCCG	1 cut(s)	423
Eco130I	CCWWGG	7 cut(s)	150, 225, 324, 1727, 2283, 2741, 3879
Eco24I	GRGCYC	5 cut(s)	36, 174, 402, 1189, 3863
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	5 cut(s)	145, 154, 205, 411, 892
Eco47III	AGCGCT	1 cut(s)	1157
Eco52I	CGGCCG	1 cut(s)	423
Eco53kI	GAGCTC	4 cut(s)	34, 172, 1187, 3861
Eco57I	CTGAAG	7 cut(s)	386, 1698, 1781, 1793, 2136, 3443, 3774
Eco88I	CYCGRG	1 cut(s)	921
Eco91I	GGTNACC	1 cut(s)	1378
EcoICRI	GAGCTC	4 cut(s)	34, 172, 1187, 3861
EcoO109I	RGGNCCY	1 cut(s)	3385
EcoO65I	GGTNACC	1 cut(s)	1378
EcoRI	GAATTC	2 cut(s)	1096, 2488
EcoRII	CCWGG	3 cut(s)	1025, 1515, 1870
EcoT14I	CCWWGG	7 cut(s)	150, 225, 324, 1727, 2283, 2741, 3879
EcoT22I	ATGCAT	1 cut(s)	2175
EcoT38I	GRGCYC	5 cut(s)	36, 174, 402, 1189, 3863
EgeI	GGCGCC	3 cut(s)	762, 903, 2943
EheI	GGCGCC	3 cut(s)	762, 903, 2943
ErhI	CCWWGG	7 cut(s)	150, 225, 324, 1727, 2283, 2741, 3879
FaqI	GGGAC	2 cut(s)	169, 3024
FbaI	TGATCA	1 cut(s)	1425
FblI	GTMKAC	1 cut(s)	3596
FriOI	GRGCYC	5 cut(s)	36, 174, 402, 1189, 3863
FspBI	CTAG	5 cut(s)	429, 684, 1581, 2513, 3087
GlaI	GCGC	6 cut(s)	379, 762, 903, 1157, 2943, 3684
GsaI	CCCAGC	2 cut(s)	1179, 2061
GsuI	CTGGAG	4 cut(s)	329, 3114, 3327, 3527
HaeII	RGCGCY	4 cut(s)	764, 905, 1159, 2945
HaeIII	GGCC	6 cut(s)	237, 242, 425, 1025, 1394, 3387
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	6 cut(s)	380, 763, 904, 1158, 2944, 3685
Hin1I	GRCGYC	4 cut(s)	126, 761, 902, 2942
Hin6I	GCGC	6 cut(s)	378, 761, 902, 1156, 2942, 3683
HinP1I	GCGC	6 cut(s)	378, 761, 902, 1156, 2942, 3683
HincII	GTYRAC	3 cut(s)	1048, 1924, 2574
HindII	GTYRAC	3 cut(s)	1048, 1924, 2574
HindIII	AAGCTT	2 cut(s)	2253, 3075
Hpy166II	GTNNAC	7 cut(s)	895, 1048, 1924, 1994, 2574, 3032, 3597
Hpy8I	GTNNAC	7 cut(s)	895, 1048, 1924, 1994, 2574, 3032, 3597
Hpy99I	CGWCG	3 cut(s)	128, 170, 3719
HpyCH4III	ACNGT	6 cut(s)	473, 607, 2963, 3287, 3613, 3634
HpyCH4IV	ACGT	3 cut(s)	2618, 3149, 3717
HpySE526I	ACGT	3 cut(s)	2618, 3149, 3717
Hsp92I	GRCGYC	4 cut(s)	126, 761, 902, 2942
HspAI	GCGC	6 cut(s)	378, 761, 902, 1156, 2942, 3683
KasI	GGCGCC	3 cut(s)	760, 901, 2941
Kpn2I	TCCGGA	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	1425
LmnI	GCTCC	6 cut(s)	976, 1242, 3133, 3341, 3467, 3546
LweI	GCATC	6 cut(s)	1156, 1270, 2219, 3194, 3229, 3492
MabI	ACCWGGT	1 cut(s)	1870
MaeI	CTAG	5 cut(s)	429, 684, 1581, 2513, 3087
MaeII	ACGT	3 cut(s)	2618, 3149, 3717
MaeIII	GTNAC	8 cut(s)	25, 389, 416, 1066, 1206, 1378, 2389, 2868
MbiI	CCGCTC	1 cut(s)	2185
MfeI	CAATTG	1 cut(s)	2406
MflI	RGATCY	3 cut(s)	2197, 2528, 3171
MlsI	TGGCCA	1 cut(s)	1394
MluNI	TGGCCA	1 cut(s)	1394
Mly113I	GGCGCC	3 cut(s)	761, 902, 2942
MlyI	GAGTC	8 cut(s)	947, 1006, 1586, 1658, 1829, 1999, 2297, 2891
MmeI	TCCRAC	3 cut(s)	189, 1109, 3306
Mox20I	TGGCCA	1 cut(s)	1394
Mph1103I	ATGCAT	1 cut(s)	2175
MroI	TCCGGA	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	1394
MseI	TTAA	8 cut(s)	696, 1562, 1688, 1745, 2148, 2166, 2223, 3821
MslI	CAYNNNNRTG	4 cut(s)	323, 2363, 3018, 3102
Msp20I	TGGCCA	1 cut(s)	1394
MspA1I	CMGCKG	5 cut(s)	740, 1213, 1352, 3347, 3602
MspCI	CTTAAG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	2406
Mva1269I	GAATGC	5 cut(s)	1584, 2173, 2706, 3099, 3479
MvaI	CCWGG	3 cut(s)	1027, 1517, 1872
MvnI	CGCG	2 cut(s)	378, 422
NarI	GGCGCC	3 cut(s)	761, 902, 2942
NciI	CCSGG	7 cut(s)	143, 239, 302, 402, 409, 1247, 3651
NcoI	CCATGG	3 cut(s)	150, 225, 324
NmeAIII	GCCGAG	1 cut(s)	3631
NmuCI	GTSAC	5 cut(s)	25, 389, 1206, 2389, 2868
NotI	GCGGCCGC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	2175
NspI	RCATGY	3 cut(s)	2173, 3199, 3568
PaeI	GCATGC	1 cut(s)	3199
PagI	TCATGA	1 cut(s)	2137
PaqCI	CACCTGC	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	5 cut(s)	1584, 2173, 2706, 3099, 3479
PfoI	TCCNGGA	1 cut(s)	1515
PleI	GAGTC	8 cut(s)	946, 1006, 1585, 1658, 1828, 1998, 2296, 2890
PluTI	GGCGCC	3 cut(s)	764, 905, 2945
PpsI	GAGTC	8 cut(s)	946, 1006, 1585, 1658, 1828, 1998, 2296, 2890
PshAI	GACNNNNGTC	1 cut(s)	2396
PsiI	TTATAA	1 cut(s)	660
Psp124BI	GAGCTC	4 cut(s)	36, 174, 1189, 3863
Psp1406I	AACGTT	1 cut(s)	3149
Psp6I	CCWGG	3 cut(s)	1025, 1515, 1870
PspEI	GGTNACC	1 cut(s)	1378
PspFI	CCCAGC	2 cut(s)	1175, 2057
PspGI	CCWGG	3 cut(s)	1025, 1515, 1870
PspPI	GGNCC	8 cut(s)	145, 154, 205, 236, 241, 411, 892, 3385
PstI	CTGCAG	3 cut(s)	1642, 3184, 3237
PstNI	CAGNNNCTG	1 cut(s)	3188
PsuI	RGATCY	3 cut(s)	2197, 2528, 3171
PvuII	CAGCTG	5 cut(s)	740, 1213, 1352, 3347, 3602
RsaI	GTAC	5 cut(s)	887, 1671, 2235, 2558, 3166
RsaNI	GTAC	5 cut(s)	886, 1670, 2234, 2557, 3165
RseI	CAYNNNNRTG	4 cut(s)	323, 2363, 3018, 3102
SacI	GAGCTC	4 cut(s)	36, 174, 1189, 3863
SaqAI	TTAA	8 cut(s)	696, 1562, 1688, 1745, 2148, 2166, 2223, 3821
Sau96I	GGNCC	8 cut(s)	145, 154, 205, 236, 241, 411, 892, 3385
ScaI	AGTACT	1 cut(s)	1671
SchI	GAGTC	8 cut(s)	947, 1006, 1586, 1658, 1829, 1999, 2297, 2891
SexAI	ACCWGGT	1 cut(s)	1870
SfaNI	GCATC	6 cut(s)	1156, 1270, 2219, 3194, 3229, 3492
SfcI	CTRYAG	6 cut(s)	1638, 1848, 2523, 3180, 3233, 3597
SfoI	GGCGCC	3 cut(s)	762, 903, 2943
SinI	GGWCC	5 cut(s)	145, 154, 205, 411, 892
SmiMI	CAYNNNNRTG	4 cut(s)	323, 2363, 3018, 3102
SmlI	CTYRAG	7 cut(s)	695, 848, 2806, 3369, 3491, 3776, 3836
SmoI	CTYRAG	7 cut(s)	695, 848, 2806, 3369, 3491, 3776, 3836
SphI	GCATGC	1 cut(s)	3199
SspDI	GGCGCC	3 cut(s)	760, 901, 2941
SspMI	CTAG	5 cut(s)	429, 684, 1581, 2513, 3087
SstI	GAGCTC	4 cut(s)	36, 174, 1189, 3863
StyI	CCWWGG	7 cut(s)	150, 225, 324, 1727, 2283, 2741, 3879
TaaI	ACNGT	6 cut(s)	473, 607, 2963, 3287, 3613, 3634
TaiI	ACGT	3 cut(s)	2621, 3152, 3720
TatI	WGTACW	3 cut(s)	1669, 2556, 3164
Tru1I	TTAA	8 cut(s)	696, 1562, 1688, 1745, 2148, 2166, 2223, 3821
Tru9I	TTAA	8 cut(s)	696, 1562, 1688, 1745, 2148, 2166, 2223, 3821
TscAI	CASTG	4 cut(s)	478, 1503, 3310, 3777
TseFI	GTSAC	5 cut(s)	25, 389, 1206, 2389, 2868
Tsp45I	GTSAC	5 cut(s)	25, 389, 1206, 2389, 2868
TspDTI	ATGAA	9 cut(s)	551, 1305, 1325, 2031, 2616, 3087, 3333, 3591, 3800
TspGWI	ACGGA	2 cut(s)	1928, 2750
TspRI	CASTG	4 cut(s)	478, 1503, 3310, 3777
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	5 cut(s)	145, 154, 205, 411, 892
XapI	RAATTY	9 cut(s)	615, 874, 1096, 1201, 1740, 1781, 2161, 2488, 3913
XbaI	TCTAGA	1 cut(s)	3086
XceI	RCATGY	3 cut(s)	2173, 3199, 3568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1875
XmiI	GTMKAC	1 cut(s)	3596
XspI	CTAG	5 cut(s)	429, 684, 1581, 2513, 3087
ZrmI	AGTACT	1 cut(s)	1671
Zsp2I	ATGCAT	1 cut(s)	2175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.