Rorug04G0289600

Calcineurin-like phosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014204
Physical Location & Seq
Forward (+)
46408780 .. 46412126
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0289600.1

Sequence Viewer

Length: 579 bp
ATGGCTACGTCGTCGTCGTCGTCGTCGGCAGAGGTGGTAACAGAGCGAAGAGGAATACCAGGAGCTCAGTTCGTAGAAGATGTGCAGACCTATCTCACCCAGACTGGCTTCGACTGTAACTCTGCCCTCGCTTTTCTCCAAGAAAGACTTCAGCAATACAAAATGGTTGAAATGAAACTTCAAGCTCAACAAAGGGAGCTTCTGGCAAAGATTCCTGACATTGAGAAGTGCTTAGATGTTGTTGCCACGTTGCAAGCTAAGAAGGGTACTGGTGAGGCACTTATTACTGATTTTGAGATCTCTGAAGGGATATATTCACGAGCTAGCATTGAGGATACTGATTCAGTATGTTTATGGCTGGGAGCTAATGTCATGTTGGAGTATTCTTGTGAAGAGGCTACTGCCCTTCTACGAAAGAATTTAGATAATGCTAAAGCCAGTTTAGAAGTTCTTCTTGCTGATCTACAGTTCTTGAGAGATCAAGTAACAATTACCCAGGTAACAATTGCTCGGGTGTACAACTGGGACGTTCATCAGCGCAGACTCCGACAAGCTTCCCCTTCTGCTAAGGACTCCTGA

Protein Analysis

192

Amino Acids

21.41

Weight (kDa)

4.84

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 54 - 175 2.7e-30 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18480
fragaria_vesca FvH4_3g25460 FvH4_3g25460 FvH4_3g25460
malus_domestica MD02G1292100.v1.1 MD07G1034500.v1.1
prunus_persica Prupe.2G031200_v2.0.a1
pyrus_communis pycom02g24670
rosa_chinensis RchiOBHm_Chr4g0435781
rosa_laevigata RLG00000006559
rosa_multiflora Rmu_sc0000051.1_g000023 Rmu_sc0004389.1_g000004
rosa_roxburghii Rroxscaffold_5G00376970
rosa_rugosa Rorug04G0289600
rosa_samantha Rh4BG352600 Rh4CG367100
rosa_wichuraiana Rw4G030030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 2 cut(s) 134, 324
AfaI GTAC 2 cut(s) 268, 518
AgsI TTSAA 2 cut(s) 170, 182
AjnI CCWGG 2 cut(s) 58, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 7 cut(s) 65, 185, 199, 257, 323, 365, 554
AluI AGCT 7 cut(s) 65, 185, 199, 257, 323, 365, 554
Alw21I GWGCWC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 510
ApoI RAATTY 1 cut(s) 418
Asp700I GAANNNNTTC 2 cut(s) 147, 450
AspLEI GCGC 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 88, 284
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 510
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 60, 497
BciVI GTATCC 1 cut(s) 328
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 464
BfuI GTATCC 1 cut(s) 328
BglII AGATCT 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 60, 497
BmeT110I CYCGRG 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 60, 497
BmrI ACTGGG 1 cut(s) 532
BmtI GCTAGC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 532
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bse1I ACTGG 4 cut(s) 109, 274, 438, 527
BseBI CCWGG 2 cut(s) 60, 497
BseDI CCNNGG 1 cut(s) 495
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 4 cut(s) 109, 274, 438, 527
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 3 cut(s) 297, 460, 478
BspCNI CTCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 4 cut(s) 109, 274, 438, 527
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 297, 460, 478
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 60, 497
Bst4CI ACNGT 2 cut(s) 116, 468
Bst6I CTCTTC 2 cut(s) 43, 387
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 255, 325
BstDEI CTNAG 4 cut(s) 66, 232, 258, 567
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 3 cut(s) 300, 463, 481
BstMBI GATC 3 cut(s) 297, 460, 478
BstNI CCWGG 2 cut(s) 60, 497
BstSCI CCNGG 2 cut(s) 58, 495
BstSFI CTRYAG 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 255, 325
CfoI GCGC 1 cut(s) 540
Csp6I GTAC 2 cut(s) 267, 517
CviAII CATG 1 cut(s) 373
CviQI GTAC 2 cut(s) 267, 517
DdeI CTNAG 4 cut(s) 66, 232, 258, 567
DpnI GATC 3 cut(s) 299, 462, 480
DpnII GATC 3 cut(s) 297, 460, 478
Eam1104I CTCTTC 2 cut(s) 43, 387
EarI CTCTTC 2 cut(s) 43, 387
Ecl136II GAGCTC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 134, 324
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 58, 495
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 1 cut(s) 376
FaiI YATR 4 cut(s) 313, 349, 355, 374
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 438, 470
FaqI GGGAC 1 cut(s) 539
FatI CATG 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 539
GsaI CCCAGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 540
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 4 cut(s) 211, 341, 543, 572
HphI GGTGA 2 cut(s) 88, 284
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 2 cut(s) 304, 548
Hpy188III TCNNGA 4 cut(s) 215, 318, 472, 576
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 6 cut(s) 13, 16, 19, 22, 25, 28
HpyAV CCTTC 4 cut(s) 256, 299, 416, 570
HpyCH4III ACNGT 2 cut(s) 116, 468
HpyCH4IV ACGT 3 cut(s) 8, 248, 528
HpyCH4V TGCA 2 cut(s) 85, 253
HpyF3I CTNAG 4 cut(s) 66, 232, 258, 567
HpySE526I ACGT 3 cut(s) 8, 248, 528
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 538
Kzo9I GATC 3 cut(s) 297, 460, 478
LmnI GCTCC 3 cut(s) 62, 196, 362
MaeI CTAG 1 cut(s) 324
MaeII ACGT 3 cut(s) 8, 248, 528
MaeIII GTNAC 4 cut(s) 37, 116, 484, 499
MalI GATC 3 cut(s) 299, 462, 480
MboI GATC 3 cut(s) 297, 460, 478
MboII GAAGA 4 cut(s) 60, 89, 404, 443
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 3 cut(s) 418, 489, 504
MlyI GAGTC 2 cut(s) 537, 566
MmeI TCCRAC 2 cut(s) 357, 571
MnlI CCTC 6 cut(s) 25, 44, 137, 268, 325, 388
MroXI GAANNNNTTC 2 cut(s) 147, 450
MspR9I CCNGG 2 cut(s) 60, 497
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 2 cut(s) 60, 497
NdeII GATC 3 cut(s) 297, 460, 478
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 376
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 17, 20
PdmI GAANNNNTTC 2 cut(s) 147, 450
PfeI GAWTC 2 cut(s) 211, 341
PleI GAGTC 2 cut(s) 537, 566
PpsI GAGTC 2 cut(s) 537, 566
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 58, 495
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 58, 495
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 268, 518
RsaNI GTAC 2 cut(s) 267, 517
SacI GAGCTC 1 cut(s) 67
Sau3AI GATC 3 cut(s) 297, 460, 478
SchI GAGTC 2 cut(s) 537, 566
ScrFI CCNGG 2 cut(s) 60, 497
SduI GDGCHC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 3 cut(s) 418, 489, 504
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 58, 495
TaaI ACNGT 2 cut(s) 116, 468
TaiI ACGT 3 cut(s) 11, 251, 531
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 418, 489, 504
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 2 cut(s) 211, 341
TspDTI ATGAA 2 cut(s) 188, 521
XapI RAATTY 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 147, 450
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.