Rorug04G0295100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014221
Physical Location & Seq
Reverse (-)
46945404 .. 46945895
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0295100.1

Sequence Viewer

Length: 492 bp
ATGAAATACGTCGAATTTGCTTCTTCCAAAGTCAAGGGGCCGGATGGAAGCTCACAAGCTGCAGCTGTATTGGGGGCCTTTGACAAACTATTTGATGAATATGCACTCCGTGTTTCTGAAAAAGTGAACTGCACAAGTGAATCATCTGCTTCTGTATCTGATTCTGAAGGGGCTACTCCAAGACATGTGAATCATACATTTAGTGTGTTACAAGACTACGAGAAGTTCACTCAATTGAAAGGCTATCTGGAAGAACCCGTCTTACCTTGGAGTAAGGATTTTGATGTATTGGCTTGGTGGAGCACTGCAGGCACCAAGTATCCTATTCTTTGTAAGATTGCACGTGATTTTTTGGCCATTCCAGTTATGCTTGCAACTTCACATCAGGCATTCAGTACTGGACCAAGGCCAGCTGATAGAAATATGGTTCACATGAAGCCCAACACACTGCATGCCTTTATGTGTGCTCGGAGCTGGTCTCCTAGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.17

Weight (kDa)

7.74

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 79 - 159 2.9e-24 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25590
fragaria_vesca FvH4_4g28580
malus_domestica MD13G1052200.v1.1 MD16G1057700.v1.1
prunus_persica Prupe.1G299900_v2.0.a1
pyrus_communis pycom13g04650 pycom16g05050
rosa_chinensis RchiOBHm_Chr4g0436671
rosa_laevigata RLG00000006505
rosa_multiflora Rmu_sc0003130.1_g000019
rosa_roxburghii Rroxscaffold_5G00377750
rosa_rugosa Rorug04G0295100
rosa_samantha Rh4AG349600 Rh4BG358300 Rh4CG372700 Rh4DG352500
rosa_wichuraiana Rw4G030580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 186
AcvI CACGTG 1 cut(s) 344
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 5 cut(s) 51, 59, 65, 413, 474
AluI AGCT 5 cut(s) 51, 59, 65, 413, 474
Alw21I GWGCWC 2 cut(s) 305, 469
Alw26I GTCTC 1 cut(s) 483
AoxI GGCC 4 cut(s) 38, 75, 354, 407
ApeKI GCWGC 2 cut(s) 59, 62
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspA2I CCTAGG 1 cut(s) 482
AspS9I GGNCC 3 cut(s) 38, 75, 401
AvaII GGWCC 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 482
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 344
Bbv12I GWGCWC 2 cut(s) 305, 469
BbvI GCAGC 2 cut(s) 46, 74
BccI CCATC 1 cut(s) 38
BciVI GTATCC 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 2 cut(s) 60, 306
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 2 cut(s) 60, 63
BlnI CCTAGG 1 cut(s) 482
BlsI GCNGC 2 cut(s) 61, 64
BmcAI AGTACT 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 3 cut(s) 38, 75, 401
BmiI GGNNCC 3 cut(s) 39, 76, 313
BplI GAGNNNNNCTC 1 cut(s) 463
BsaAI YACGTR 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 266, 404, 482
Bse1I ACTGG 2 cut(s) 362, 403
BseDI CCNNGG 3 cut(s) 266, 404, 482
BseGI GGATG 1 cut(s) 49
BseNI ACTGG 2 cut(s) 362, 403
BseXI GCAGC 2 cut(s) 46, 74
BsgI GTGCAG 1 cut(s) 115
BshFI GGCC 4 cut(s) 40, 77, 356, 409
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 305, 469
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 4 cut(s) 40, 77, 356, 409
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 305, 469
BspANI GGCC 4 cut(s) 40, 77, 356, 409
BspLI GGNNCC 3 cut(s) 39, 76, 313
BspMAI CTGCAG 2 cut(s) 64, 310
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 483
BsrI ACTGG 2 cut(s) 362, 403
BssECI CCNNGG 3 cut(s) 266, 404, 482
BssT1I CCWWGG 3 cut(s) 266, 404, 482
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 4 cut(s) 310, 372, 411, 453
BstF5I GGATG 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 483
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNSI RCATGY 2 cut(s) 188, 455
BstSFI CTRYAG 2 cut(s) 60, 306
BstV1I GCAGC 2 cut(s) 46, 74
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 4 cut(s) 40, 77, 356, 409
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 2 cut(s) 303, 446
BtsIMutI CAGTG 2 cut(s) 303, 446
Cac8I GCNNGC 4 cut(s) 310, 372, 411, 453
Cfr13I GGNCC 3 cut(s) 38, 75, 401
Csp6I GTAC 1 cut(s) 396
CviAII CATG 3 cut(s) 185, 433, 452
CviQI GTAC 1 cut(s) 396
DraIII CACNNNGTG 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 354
Eco130I CCWWGG 3 cut(s) 266, 404, 482
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 186
Eco72I CACGTG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 75
EcoT14I CCWWGG 3 cut(s) 266, 404, 482
ErhI CCWWGG 3 cut(s) 266, 404, 482
FaeI CATG 3 cut(s) 188, 436, 455
FaiI YATR 8 cut(s) 102, 186, 195, 368, 425, 434, 453, 461
FatI CATG 3 cut(s) 184, 432, 451
Fnu4HI GCNGC 2 cut(s) 60, 63
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 60, 63
FspBI CTAG 1 cut(s) 483
GluI GCNGC 2 cut(s) 60, 63
HaeIII GGCC 4 cut(s) 40, 77, 356, 409
HapII CCGG 1 cut(s) 41
Hin1II CATG 3 cut(s) 188, 436, 455
HinfI GANTC 3 cut(s) 140, 161, 190
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 127, 228, 430
Hpy188I TCNGA 4 cut(s) 118, 160, 166, 471
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 3 cut(s) 127, 228, 430
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 9, 343
HpyCH4V TGCA 7 cut(s) 62, 104, 132, 308, 341, 374, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpySE526I ACGT 2 cut(s) 9, 343
Hsp92II CATG 3 cut(s) 188, 436, 455
LmnI GCTCC 2 cut(s) 300, 471
LpnPI CCDG 8 cut(s) 54, 233, 294, 371, 375, 384, 423, 460
Lsp1109I GCAGC 2 cut(s) 46, 74
MaeI CTAG 1 cut(s) 483
MaeII ACGT 2 cut(s) 9, 343
MaeIII GTNAC 1 cut(s) 207
MboII GAAGA 2 cut(s) 15, 263
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 305, 469
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 2 cut(s) 14, 233
MluNI TGGCCA 1 cut(s) 356
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 65, 413
MspI CCGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 309
NlaIII CATG 3 cut(s) 188, 436, 455
NlaIV GGNNCC 3 cut(s) 39, 76, 313
NspI RCATGY 2 cut(s) 188, 455
PaeI GCATGC 1 cut(s) 455
PciI ACATGT 1 cut(s) 184
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 3 cut(s) 140, 161, 190
PkrI GCNGC 2 cut(s) 61, 64
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 344
PscI ACATGT 1 cut(s) 184
PspCI CACGTG 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 39, 76, 313
PspPI GGNCC 3 cut(s) 38, 75, 401
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PstI CTGCAG 2 cut(s) 64, 310
PvuII CAGCTG 2 cut(s) 65, 413
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SatI GCNGC 2 cut(s) 60, 63
Sau96I GGNCC 3 cut(s) 38, 75, 401
ScaI AGTACT 1 cut(s) 397
SduI GDGCHC 2 cut(s) 305, 469
SetI ASST 8 cut(s) 12, 53, 61, 67, 268, 346, 415, 476
SfcI CTRYAG 2 cut(s) 60, 306
SinI GGWCC 1 cut(s) 401
SphI GCATGC 1 cut(s) 455
Sse9I AATT 2 cut(s) 14, 233
SspMI CTAG 1 cut(s) 483
StyI CCWWGG 3 cut(s) 266, 404, 482
TaiI ACGT 2 cut(s) 12, 346
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 14, 233
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 3 cut(s) 140, 161, 190
TscAI CASTG 2 cut(s) 310, 453
TseI GCWGC 2 cut(s) 59, 62
TspDTI ATGAA 3 cut(s) 17, 111, 449
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 310, 453
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 14
XceI RCATGY 2 cut(s) 188, 455
XmaJI CCTAGG 1 cut(s) 482
XspI CTAG 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.