Rh4BG358300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014221
Physical Location & Seq
Reverse (-)
51826806 .. 51828787
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG358300.1

Sequence Viewer

Length: 1230 bp
ATGAGAGACAGAGGCAAAGCTGTGGAGTCAGCTCACAACTTTGACATGGAGTACTATTGTTCTTCATCTGAAATGCCATGCAATAAACACCCGAATTCTTCTTCCATTGGAATATGTGCTTATTGTTTGAAAGAGCGCCTAGCTCTGCTGGTGTGTTCAGATTGCGGTGAGCAGCGTCTCTCTTCTTGTTCTTGTTCTGAGATCTCATCCTCATCGAATCGAAACTCATGTACTGGGGAGGTAGGTAGTGTTGGGAGAGTCTCATTTCTGATTGAGAATGAGAAGAATGAGGCTTTACTTTCGAAACAAAAGCCGAAACCCCAAGAGAAAGAGGAGGTTGTGGTGCTCAGGAGGAGCAGCAGCAGCTGTGCTGAGATCAAGAGAAGTGGGTTTTGGAGATTTGGGAGGTTGTTTAGGAAGAAGAGGTCAGAGAAGGATTGTGGGAACAAAAGTGTTGGTGGGTTTGATGACAAAAGTGAGATGTGGCTGGTTGATCATGTAGGTGTGTCAAGGTCTAGGTCTCTTTGTAGTTTTAGAGGTGGTGGTTTGTTTGAGTCTGAGGATGGTGGTGATCACCTAGTGGTTTCTGGGGCTAGGAGTTCAATTTCAGCTGCAAGGAGTTCTAGTGTCACTGCTGGTATGGTTTTGGATTCTGGAAGAAAGAGTGGGTTTAGTGAAGGAAGAAAGAGTGGGTTTAGTGAAGGGAGGAAGAGTGGGTTTAGTGAAGGGAGAAAGAGTGGTTTTAGTGAAGGAAGGAAGAGTGGTTTTGATGGTGAAAAGAAAGATGAAGTCTTGGTTTCTGAATTGGGTGGTAATGATCAGTTCAAGGGTGTGAAGAAAAGTGATTTTAGTGGAGCAACCAAGAGAGTTTTCTCACTCAAGGAGAGTGATTTTAGTAGATTGGATGAGTCAGGGTTTATTGACTTGAAGCTTGATTACTCAACAGAATCCAAGCCAGATTTGAAGATGGGAACTTTGACAGGTTCAGAGTCTCTGTTTGGAAGCATGAGGGGTAGTGACTTTGTGGCACATGAATACGGTCCAGGTCAATTTGGGGATGGGATTTTCAGTCATAGTGGTTCTTGTAGAATTACAGTCAATGAGAGAGGGATAAAGAGGGGAAGGAAAAGCTTGAAGGGTGGTTGGAAATGGATTTTCAGGCATCATCCAAGCTGGGGATCCAGTACTAGGAGGAAGAAAGATGAAGAAGATATGATGTTCAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

44.96

Weight (kDa)

9.11

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25590
fragaria_vesca FvH4_4g28580
malus_domestica MD13G1052200.v1.1 MD16G1057700.v1.1
prunus_persica Prupe.1G299900_v2.0.a1
pyrus_communis pycom13g04650 pycom16g05050
rosa_chinensis RchiOBHm_Chr4g0436671
rosa_laevigata RLG00000006505
rosa_multiflora Rmu_sc0003130.1_g000019
rosa_roxburghii Rroxscaffold_5G00377750
rosa_rugosa Rorug04G0295100
rosa_samantha Rh4AG349600 Rh4BG358300 Rh4CG372700 Rh4DG352500
rosa_wichuraiana Rw4G030580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 1173, 1186
AcsI RAATTY 1 cut(s) 94
AdeI CACNNNGTG 1 cut(s) 580
AfaI GTAC 3 cut(s) 53, 232, 1186
AfiI CCNNNNNNNGG 2 cut(s) 1175, 1188
AgsI TTSAA 7 cut(s) 130, 603, 826, 928, 964, 1135, 1222
AjnI CCWGG 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 4 cut(s) 376, 408, 854, 886
AluBI AGCT 8 cut(s) 20, 32, 143, 366, 611, 931, 1131, 1173
AluI AGCT 8 cut(s) 20, 32, 143, 366, 611, 931, 1131, 1173
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 4 cut(s) 182, 265, 525, 996
AlwI GGATC 2 cut(s) 1173, 1186
AlwNI CAGNNNCTG 1 cut(s) 366
ApeKI GCWGC 5 cut(s) 172, 357, 360, 363, 611
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 1040
AsuHPI GGTGA 4 cut(s) 179, 566, 581, 785
AsuII TTCGAA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 1040
BamHI GGATCC 1 cut(s) 1178
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 5 cut(s) 184, 369, 372, 375, 598
BccI CCATC 4 cut(s) 557, 764, 961, 1052
BciT130I CCWGG 1 cut(s) 1044
BclI TGATCA 3 cut(s) 493, 571, 817
BcoDI GTCTC 4 cut(s) 182, 265, 525, 996
BfaI CTAG 6 cut(s) 140, 516, 578, 594, 624, 1188
BfoI RGCGCY 1 cut(s) 139
BglII AGATCT 1 cut(s) 201
BisI GCNGC 5 cut(s) 173, 358, 361, 364, 612
BlsI GCNGC 5 cut(s) 174, 359, 362, 365, 613
BmcAI AGTACT 2 cut(s) 53, 1186
Bme1390I CCNGG 1 cut(s) 1044
Bme18I GGWCC 1 cut(s) 1040
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 1180
BmrFI CCNGG 1 cut(s) 1044
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 1171
BmuI ACTGGG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 347
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 525
BsaXI ACNNNNNCTCC 6 cut(s) 610, 640, 697, 721, 727, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 1175, 1188
Bse1I ACTGG 2 cut(s) 238, 1182
BseBI CCWGG 1 cut(s) 1044
BseGI GGATG 5 cut(s) 206, 568, 910, 1063, 1165
BseLI CCNNNNNNNGG 2 cut(s) 1175, 1188
BseMII CTCAG 4 cut(s) 189, 361, 363, 549
BseNI ACTGG 2 cut(s) 238, 1182
BseRI GAGGAG 2 cut(s) 347, 367
BseXI GCAGC 5 cut(s) 184, 369, 372, 375, 598
BseYI CCCAGC 1 cut(s) 1173
BsiHKAI GWGCWC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 1175, 1188
BsmAI GTCTC 4 cut(s) 182, 265, 525, 996
BsmBI CGTCTC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 525
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 4 cut(s) 190, 360, 364, 550
BspLI GGNNCC 1 cut(s) 1180
BspPI GGATC 2 cut(s) 1173, 1186
BspT104I TTCGAA 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 525
BsrI ACTGG 2 cut(s) 238, 1182
BssMI GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 2 cut(s) 1040, 1096
Bst6I CTCTTC 4 cut(s) 187, 416, 704, 752
BstBI TTCGAA 1 cut(s) 302
BstDEI CTNAG 4 cut(s) 198, 347, 372, 558
BstF5I GGATG 5 cut(s) 206, 568, 910, 1063, 1165
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 6 cut(s) 204, 378, 496, 574, 820, 1181
BstMAI GTCTC 4 cut(s) 182, 265, 525, 996
BstMBI GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNI CCWGG 1 cut(s) 1044
BstSCI CCNGG 1 cut(s) 1042
BstV1I GCAGC 5 cut(s) 184, 369, 372, 375, 598
BstX2I RGATCY 2 cut(s) 201, 1178
BstYI RGATCY 2 cut(s) 201, 1178
BtsCI GGATG 5 cut(s) 206, 568, 910, 1063, 1165
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
CaiI CAGNNNCTG 1 cut(s) 366
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 1040
CseI GACGC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 52, 231, 1185
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 6 cut(s) 46, 78, 228, 497, 1006, 1031
CviQI GTAC 3 cut(s) 52, 231, 1185
DdeI CTNAG 4 cut(s) 198, 347, 372, 558
DpnI GATC 6 cut(s) 203, 377, 495, 573, 819, 1180
DpnII GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
DraIII CACNNNGTG 1 cut(s) 580
Eam1104I CTCTTC 4 cut(s) 187, 416, 704, 752
EarI CTCTTC 4 cut(s) 187, 416, 704, 752
Eco31I GGTCTC 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 1040
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 1042
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 6 cut(s) 49, 81, 231, 500, 1009, 1034
FatI CATG 6 cut(s) 45, 77, 227, 496, 1005, 1030
FbaI TGATCA 3 cut(s) 493, 571, 817
Fnu4HI GCNGC 5 cut(s) 173, 358, 361, 364, 612
FokI GGATG 5 cut(s) 193, 575, 917, 1070, 1152
Fsp4HI GCNGC 5 cut(s) 173, 358, 361, 364, 612
FspBI CTAG 6 cut(s) 140, 516, 578, 594, 624, 1188
GlaI GCGC 1 cut(s) 137
GluI GCNGC 5 cut(s) 173, 358, 361, 364, 612
GsaI CCCAGC 1 cut(s) 1177
HaeII RGCGCY 1 cut(s) 139
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 138
Hin1II CATG 6 cut(s) 49, 81, 231, 500, 1009, 1034
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HindIII AAGCTT 2 cut(s) 929, 1129
HinfI GANTC 8 cut(s) 26, 217, 258, 554, 650, 908, 947, 989
HphI GGTGA 4 cut(s) 179, 566, 581, 785
Hpy188I TCNGA 8 cut(s) 70, 160, 199, 270, 430, 559, 802, 988
Hpy188III TCNNGA 3 cut(s) 349, 379, 654
HpyAV CCTTC 8 cut(s) 427, 671, 695, 719, 743, 747, 1116, 1129
HpyCH4III ACNGT 2 cut(s) 1040, 1096
HpyCH4V TGCA 2 cut(s) 81, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 4 cut(s) 198, 347, 372, 558
Hsp92II CATG 6 cut(s) 49, 81, 231, 500, 1009, 1034
HspAI GCGC 1 cut(s) 136
Ksp22I TGATCA 3 cut(s) 493, 571, 817
Kzo9I GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
LmnI GCTCC 2 cut(s) 354, 854
Lsp1109I GCAGC 5 cut(s) 184, 369, 372, 375, 598
LweI GCATC 1 cut(s) 1171
MaeI CTAG 6 cut(s) 140, 516, 578, 594, 624, 1188
MaeIII GTNAC 2 cut(s) 628, 1016
MalI GATC 6 cut(s) 203, 377, 495, 573, 819, 1180
MboI GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
MflI RGATCY 2 cut(s) 201, 1178
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 5 cut(s) 94, 603, 803, 1049, 1089
MlyI GAGTC 5 cut(s) 35, 267, 563, 917, 998
MmeI TCCRAC 1 cut(s) 1124
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 2 cut(s) 366, 611
MspR9I CCNGG 1 cut(s) 1044
MvaI CCWGG 1 cut(s) 1044
MwoI GCNNNNNNNGC 1 cut(s) 363
NdeII GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
NlaIII CATG 6 cut(s) 49, 81, 231, 500, 1009, 1034
NlaIV GGNNCC 1 cut(s) 1180
NmuCI GTSAC 2 cut(s) 628, 1016
NspV TTCGAA 1 cut(s) 302
PfeI GAWTC 3 cut(s) 217, 650, 947
PkrI GCNGC 5 cut(s) 174, 359, 362, 365, 613
PleI GAGTC 5 cut(s) 34, 266, 562, 916, 997
PpsI GAGTC 5 cut(s) 34, 266, 562, 916, 997
Psp6I CCWGG 1 cut(s) 1042
PspFI CCCAGC 1 cut(s) 1173
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 1 cut(s) 1180
PspPI GGNCC 1 cut(s) 1040
PstNI CAGNNNCTG 1 cut(s) 366
PsuI RGATCY 2 cut(s) 201, 1178
PvuII CAGCTG 2 cut(s) 366, 611
RsaI GTAC 3 cut(s) 53, 232, 1186
RsaNI GTAC 3 cut(s) 52, 231, 1185
RseI CAYNNNNRTG 1 cut(s) 501
SatI GCNGC 5 cut(s) 173, 358, 361, 364, 612
Sau3AI GATC 6 cut(s) 201, 375, 493, 571, 817, 1178
Sau96I GGNCC 1 cut(s) 1040
ScaI AGTACT 2 cut(s) 53, 1186
SchI GAGTC 5 cut(s) 35, 267, 563, 917, 998
ScrFI CCNGG 1 cut(s) 1044
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 1 cut(s) 1171
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 1 cut(s) 1040
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 5 cut(s) 94, 603, 803, 1049, 1089
SsiI CCGC 1 cut(s) 165
SspMI CTAG 6 cut(s) 140, 516, 578, 594, 624, 1188
StyD4I CCNGG 1 cut(s) 1042
TaaI ACNGT 2 cut(s) 1040, 1096
TaqI TCGA 3 cut(s) 215, 220, 302
TasI AATT 5 cut(s) 94, 603, 803, 1049, 1089
TatI WGTACW 3 cut(s) 51, 230, 1184
TfiI GAWTC 3 cut(s) 217, 650, 947
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 628, 1016
TseI GCWGC 5 cut(s) 172, 357, 360, 363, 611
Tsp45I GTSAC 2 cut(s) 628, 1016
TspDTI ATGAA 4 cut(s) 54, 801, 1047, 1218
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 1040
XapI RAATTY 1 cut(s) 94
XspI CTAG 6 cut(s) 140, 516, 578, 594, 624, 1188
ZrmI AGTACT 2 cut(s) 53, 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.