Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008534

Physical Location & Seq

Genomic Coordinates Forward (+)

5098134 .. 5100358

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0058400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCCACCGCCAAAGCCACCACCAGGAAGAGGCGCGCGGCCGAGCCCGACCTCGCCAAATCGGCCAACCTCGATCTCGATCTCGACCTCTCCAGTGATATCAAAGGAATCATGTCGGCTCTGCAACAGATCCGAGAGAAGGCGCACAAGGACGGCCTCAAGAAGAACGAAGAGACCATTTCCAGTGTGGCTGCTGAAGTCAGGTCTGTGATTGATGAACTGAAGTCGAAAGTTGAGAAGGACAGGCAAAGTTTCGCGAAATCACTTTCAAAGAGCTCAAAAGAGTGTGAGAATTGCTTGAAGACTGAAACTACCAAGTTCCAAGCAGTTTACGAGAAATTCTGCAAGGATCAAGCGAACCATCTACAATCCCTGAAAGGTATCATTTCAAACTTTGAAGAAGAGAAGGAAAGGCTATTCACTCGATATGAGCAACTCAGAAAGAGAGAGAGAACTATGATATCAGAGCATGAAAAAGCTTGCACCGATAAAATTTCCAAGTTAGAAGAGTCTCTGAAAAAGAAGAAGCAGGACAACAAAACTTTCAGCGTTTTGAGGAAAACTCTTGGTTCATTTCTGGACGATGATGCTTCAGATGAAGAAGGCGTCCCACTTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031984 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045010 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051493 GO:0051495 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098827 GO:0110053 GO:1902680 GO:1902903 GO:1902905 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04810 map04810

Pfam Domains

Protein Families

Nckap1

Protein Analysis

207

Amino Acids

23.6

Weight (kDa)

8.21

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35110 AT2G35110
fragaria_vesca	FvH4_3g12410 FvH4_3g12410
malus_domestica	MD05G1250500.v1.1 MD10G1231300.v1.1
prunus_persica	Prupe.4G113100_v2.0.a1 Prupe.4G113100_v2.0.a1 Prupe.4G113100_v2.0.a1 Prupe.4G113100_v2.0.a1
pyrus_communis	pycom05g22840 pycom10g19450
rosa_chinensis	RchiOBHm_Chr5g0020301
rosa_laevigata	RLG00000032516
rosa_multiflora	Rmu_sc0002087.1_g000004 Rmu_sc0007157.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057910
rosa_rugosa	Rorug05G0058400
rosa_samantha	Rh5AG148800 Rh5BG148400 Rh5CG159900 Rh5DG147200
rosa_wichuraiana	Rw5G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	36, 38, 257
AciI	CCGC	2 cut(s)	9, 38
AclWI	GGATC	2 cut(s)	124, 357
AcoI	YGGCCR	2 cut(s)	39, 63
AcsI	RAATTY	2 cut(s)	338, 492
AcuI	CTGAAG	3 cut(s)	216, 242, 576
AcyI	GRCGYC	1 cut(s)	606
AfiI	CCNNNNNNNGG	3 cut(s)	24, 30, 139
AgsI	TTSAA	4 cut(s)	270, 301, 390, 398
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	276, 479
AluI	AGCT	2 cut(s)	276, 479
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	167, 516
AlwI	GGATC	2 cut(s)	124, 357
AoxI	GGCC	3 cut(s)	39, 63, 154
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	338, 492
AspLEI	GCGC	3 cut(s)	36, 38, 145
BanII	GRGCYC	2 cut(s)	48, 278
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	167, 516
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	39, 192
BlsI	GCNGC	2 cut(s)	40, 193
Bme1390I	CCNGG	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 30, 139
Bse1I	ACTGG	2 cut(s)	93, 183
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	24, 30, 139
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	2 cut(s)	93, 183
BsePI	GCGCGC	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	3 cut(s)	36, 38, 257
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	41, 65, 156
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	24, 30, 139
BsmAI	GTCTC	2 cut(s)	167, 516
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	3 cut(s)	41, 65, 156
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	48, 278
Bsp143I	GATC	4 cut(s)	73, 79, 129, 349
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	2 cut(s)	9, 38
BspANI	GGCC	3 cut(s)	41, 65, 156
BspCNI	CTCAG	1 cut(s)	450
BspFNI	CGCG	3 cut(s)	36, 38, 257
BspPI	GGATC	2 cut(s)	124, 357
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	93, 183
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	4 cut(s)	73, 79, 129, 349
BssNI	GRCGYC	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	25
Bst6I	CTCTTC	4 cut(s)	23, 165, 396, 501
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	36, 481
BstDEI	CTNAG	1 cut(s)	437
BstFNI	CGCG	3 cut(s)	36, 38, 257
BstHHI	GCGC	3 cut(s)	36, 38, 145
BstKTI	GATC	4 cut(s)	76, 82, 132, 352
BstMAI	GTCTC	2 cut(s)	167, 516
BstMBI	GATC	4 cut(s)	73, 79, 129, 349
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	3 cut(s)	36, 38, 257
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	41, 65, 156
BtsIMutI	CAGTG	2 cut(s)	100, 190
BtuMI	TCGCGA	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	36, 481
CfoI	GCGC	3 cut(s)	36, 38, 145
CseI	GACGC	1 cut(s)	595
CviAII	CATG	2 cut(s)	112, 470
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	75, 81, 131, 351
DpnII	GATC	4 cut(s)	73, 79, 129, 349
EaeI	YGGCCR	2 cut(s)	39, 63
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	23, 165, 396, 501
EarI	CTCTTC	4 cut(s)	23, 165, 396, 501
Ecl136II	GAGCTC	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	48, 278
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	2 cut(s)	100, 462
Eco52I	CGGCCG	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	3 cut(s)	216, 242, 576
EcoICRI	GAGCTC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	2 cut(s)	100, 462
EcoT38I	GRGCYC	2 cut(s)	48, 278
FaeI	CATG	2 cut(s)	115, 473
FaiI	YATR	4 cut(s)	113, 429, 458, 471
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	2 cut(s)	111, 469
Fnu4HI	GCNGC	2 cut(s)	39, 192
FriOI	GRGCYC	2 cut(s)	48, 278
Fsp4HI	GCNGC	2 cut(s)	39, 192
GlaI	GCGC	3 cut(s)	35, 37, 144
GluI	GCNGC	2 cut(s)	39, 192
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	3 cut(s)	41, 65, 156
HgaI	GACGC	1 cut(s)	595
HhaI	GCGC	3 cut(s)	36, 38, 145
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	115, 473
Hin6I	GCGC	3 cut(s)	34, 36, 143
HinP1I	GCGC	3 cut(s)	34, 36, 143
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	2 cut(s)	108, 509
Hpy166II	GTNNAC	2 cut(s)	6, 331
Hpy188I	TCNGA	5 cut(s)	134, 440, 466, 516, 595
Hpy188III	TCNNGA	5 cut(s)	77, 83, 160, 256, 578
Hpy8I	GTNNAC	2 cut(s)	6, 331
HpyAV	CCTTC	4 cut(s)	133, 232, 400, 596
HpyCH4V	TGCA	3 cut(s)	124, 345, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	437
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	115, 473
HspAI	GCGC	3 cut(s)	34, 36, 143
Kzo9I	GATC	4 cut(s)	73, 79, 129, 349
LpnPI	CCDG	9 cut(s)	10, 37, 106, 187, 196, 229, 386, 515, 563
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	577
MalI	GATC	4 cut(s)	75, 81, 131, 351
MboI	GATC	4 cut(s)	73, 79, 129, 349
MboII	GAAGA	9 cut(s)	40, 175, 182, 313, 410, 413, 518, 535, 611
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	48, 278
MluCI	AATT	3 cut(s)	292, 338, 492
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	24, 62, 80, 98, 167, 549
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	3 cut(s)	36, 38, 257
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	4 cut(s)	73, 79, 129, 349
NlaIII	CATG	2 cut(s)	115, 473
NmeAIII	GCCGAG	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	257
PauI	GCGCGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	40, 193
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	129
PteI	GCGCGC	1 cut(s)	34
RruI	TCGCGA	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	278
SatI	GCNGC	2 cut(s)	39, 192
Sau3AI	GATC	4 cut(s)	73, 79, 129, 349
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	48, 278
SetI	ASST	7 cut(s)	54, 72, 90, 206, 278, 382, 481
SfaNI	GCATC	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	292, 338, 492
SsiI	CCGC	2 cut(s)	9, 38
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	23
TaqI	TCGA	5 cut(s)	72, 78, 84, 227, 424
TasI	AATT	3 cut(s)	292, 338, 492
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	2 cut(s)	100, 190
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	231, 486, 561, 612
TspRI	CASTG	2 cut(s)	100, 190
XapI	RAATTY	2 cut(s)	338, 492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.