Rorug05G0068900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014415
Physical Location & Seq
Reverse (-)
5909314 .. 5910159
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0068900.1

Sequence Viewer

Length: 759 bp
ATGGGTTTTGGGAAGGATGATCTTGATTTGGTGTTGGTCCCAAGTGGATTGCTGATCATGTTTGTCTACCACATCAACCTTCTCTACAGATATCTTCATCTCCCTCACACCACAGTCATTGGCTTTGAAAACAATGACAAAAGAGCTTGGGTTGAAAGAGTTATGCAGGCTGAAAGAAGAGATGTTGGAATAGTACTTAATGTGATTTCATCAAACACATCAGCAGCAACATTTTTGTGTTCTATCTCCCTAACTCTTAGTTCCCTTATTGGAGCTTGGCTTGGAAGCAACACAAATGGGGTCTTTCAGAGTGAATTAGTCTACGGCAACACGAATCCATCAACGATTACCATCAAGTACATAACCCTCTTAACTTGCTTCCTTCTCGCATTCGCTTGCTTTGTTCAATCAGCAAGGCACTTTGTTCATGCCAACTACCTAATAAGCACACCAGACAGTAACATTCCAGCCTGGTATGTAGAGATGGCAGTCATAAGGGGTGGTGATTTTTGGTCACTTGGGCTAAGAGCTTTGTACTTTGCTCTTACTTTGCTTCTATGGTTTTTTGGTCCAATTCCAATGTTTGCCTCCTCCATTGTTCTGGTCATGGTCCTCCATTACCTTGACACAAACACCAGGCCAATGTTTCAGCATCAGTTTAAAGGAAAGGAGATGGTGAAGAAGGTTGAGGAGAGAATTTCAGAGGTAGGTGTGACCTCACGGCATCTTCACAAAGAAAAGGTTGAAACTTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

252

Amino Acids

28.51

Weight (kDa)

7.79

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 212 7.8e-62 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014415)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20140
fragaria_vesca FvH4_3g13270 FvH4_3g13270 FvH4_3g13270
malus_domestica MD05G1243600.v1.1 MD10G1225500.v1.1
prunus_persica Prupe.4G120100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0021741
rosa_laevigata RLG00000032624
rosa_multiflora Rmu_ssc0000233.1_g000008
rosa_roxburghii Rroxscaffold_1G00056980
rosa_rugosa Rorug05G0068900
rosa_samantha Rh5AG157400 Rh5BG157100 Rh5CG171200 Rh5DG157300
rosa_wichuraiana Rw5G014030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 66, 321
AcsI RAATTY 1 cut(s) 696
AfaI GTAC 3 cut(s) 195, 359, 536
AgsI TTSAA 4 cut(s) 128, 155, 407, 746
AjnI CCWGG 2 cut(s) 470, 635
AluBI AGCT 3 cut(s) 146, 275, 530
AluI AGCT 3 cut(s) 146, 275, 530
AoxI GGCC 1 cut(s) 638
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 696
AspS9I GGNCC 3 cut(s) 37, 569, 610
AsuHPI GGTGA 2 cut(s) 515, 688
AvaII GGWCC 3 cut(s) 37, 569, 610
BbvI GCAGC 1 cut(s) 236
BccI CCATC 4 cut(s) 346, 359, 478, 667
BceAI ACGGC 2 cut(s) 340, 737
BciT130I CCWGG 2 cut(s) 472, 637
BclI TGATCA 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 195
Bme1390I CCNGG 2 cut(s) 472, 637
Bme18I GGWCC 3 cut(s) 37, 569, 610
BmgT120I GGNCC 3 cut(s) 37, 569, 610
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 472, 637
BmsI GCATC 2 cut(s) 661, 733
BsaBI GATNNNNATC 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 2 cut(s) 472, 637
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 580, 704
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 640
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 1 cut(s) 640
Bsp143I GATC 2 cut(s) 19, 54
BspANI GGCC 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 39
BssMI GATC 2 cut(s) 19, 54
Bst2UI CCWGG 2 cut(s) 472, 637
Bst4CI ACNGT 2 cut(s) 115, 458
Bst6I CTCTTC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 168, 397
BstDEI CTNAG 2 cut(s) 257, 524
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 22, 57
BstMBI GATC 2 cut(s) 19, 54
BstNI CCWGG 2 cut(s) 472, 637
BstSCI CCNGG 2 cut(s) 470, 635
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 601
BsuRI GGCC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 168, 397
Cfr13I GGNCC 3 cut(s) 37, 569, 610
Csp6I GTAC 3 cut(s) 194, 358, 535
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 3 cut(s) 58, 428, 607
CviJI RGCY 9 cut(s) 123, 146, 170, 275, 280, 470, 523, 530, 640
CviKI_1 RGCY 9 cut(s) 123, 146, 170, 275, 280, 470, 523, 530, 640
CviQI GTAC 3 cut(s) 194, 358, 535
DdeI CTNAG 2 cut(s) 257, 524
DpnI GATC 2 cut(s) 21, 56
DpnII GATC 2 cut(s) 19, 54
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 92
Eco47I GGWCC 3 cut(s) 37, 569, 610
EcoRII CCWGG 2 cut(s) 470, 635
EcoRV GATATC 1 cut(s) 92
FaeI CATG 3 cut(s) 61, 431, 610
FaiI YATR 8 cut(s) 59, 164, 362, 429, 477, 494, 559, 608
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 57, 427, 606
FbaI TGATCA 1 cut(s) 54
FblI GTMKAC 2 cut(s) 66, 321
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 640
Hin1II CATG 3 cut(s) 61, 431, 610
HinfI GANTC 1 cut(s) 334
HphI GGTGA 2 cut(s) 515, 688
Hpy166II GTNNAC 2 cut(s) 67, 322
Hpy188I TCNGA 2 cut(s) 309, 703
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 2 cut(s) 67, 322
HpyAV CCTTC 4 cut(s) 7, 89, 392, 676
HpyCH4III ACNGT 2 cut(s) 115, 458
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 257, 524
Hsp92II CATG 3 cut(s) 61, 431, 610
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 19, 54
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 8 cut(s) 152, 457, 465, 480, 484, 587, 622, 649
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 2 cut(s) 661, 733
MaeIII GTNAC 3 cut(s) 458, 513, 712
MalI GATC 2 cut(s) 21, 56
MboI GATC 2 cut(s) 19, 54
MboII GAAGA 4 cut(s) 86, 189, 691, 719
MluCI AATT 3 cut(s) 314, 573, 696
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 8 cut(s) 114, 377, 598, 601, 623, 682, 697, 727
MseI TTAA 3 cut(s) 198, 371, 660
MslI CAYNNNNRTG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 472, 637
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 472, 637
NdeII GATC 2 cut(s) 19, 54
NlaIII CATG 3 cut(s) 61, 431, 610
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 513, 712
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 470, 635
PspGI CCWGG 2 cut(s) 470, 635
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 3 cut(s) 37, 569, 610
RsaI GTAC 3 cut(s) 195, 359, 536
RsaNI GTAC 3 cut(s) 194, 358, 535
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 3 cut(s) 198, 371, 660
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 19, 54
Sau96I GGNCC 3 cut(s) 37, 569, 610
ScaI AGTACT 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 472, 637
SfaNI GCATC 2 cut(s) 661, 733
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 3 cut(s) 37, 569, 610
SmiMI CAYNNNNRTG 1 cut(s) 235
Sse9I AATT 3 cut(s) 314, 573, 696
StyD4I CCNGG 2 cut(s) 470, 635
TaaI ACNGT 2 cut(s) 115, 458
TasI AATT 3 cut(s) 314, 573, 696
TatI WGTACW 3 cut(s) 193, 357, 534
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 3 cut(s) 198, 371, 660
Tru9I TTAA 3 cut(s) 198, 371, 660
TseFI GTSAC 2 cut(s) 513, 712
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 2 cut(s) 513, 712
TspDTI ATGAA 3 cut(s) 86, 198, 416
VpaK11BI GGWCC 3 cut(s) 37, 569, 610
XapI RAATTY 1 cut(s) 696
XmiI GTMKAC 2 cut(s) 66, 321
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.