Rorug05G0082200

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017624
Physical Location & Seq
Reverse (-)
7100719 .. 7102387
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0082200.1

Sequence Viewer

Length: 714 bp
ATGGAAGACAATCATCAGTTGAAGTTAGACTTGGAAGAGCTCCGCTACCTCCAGAGCATTGCCCAACGCCGCCATATCATCAACCTCCTCAACATTCTCTCCAAAAACCCCCGTCTCTTCTATGATATTCTAAACTCGGAGAAAAAGTTGCCTCCACCTCCACAATCTTCTCAAGGCAAAGAGTCAAAGTCCTCCGCCGTGAGCAAAATTGCCGCCACAAAAGAAGTTGCCGCCTCCACCACCACCACCAAGAAACTAGAGAATCAGCAGTGGCGCCACGGGGAGGTAACGTCATCCGTGTGGAGGTCAAAAGAGGAGAAGAAGGCAGATGAGCATCAACTTCCGAATCCGGAAAGGTTTTCTGTTTCAATGAAAATTCCTCATTATGTAGAGGAGTATGAAGGCTGCATTAGCAAAGGGAAGCAACGTAAGAAAGTAACAGTATCATTGGCAGGAAAAATCACCAACAAAATGCAAAGATTCAACTCCTCGAACCTTTTCTTCTATGATTTAGAAGGTGGTGGTTCTAAAGTCCAAATTGTGGCTGATGCAAGCAATTCAGATTTGGCGGAATCTGAATTTTCTAGGCTCCATTCTTATGTGATGCGTGGTGATTTGGTTGGGGTAGTCGGGTTTCCAGGAAAAACTAATAGGGGGGACCTGAGCATTTTTGCAAGATCATTTGTACCCTTATCAAAGCGAAGGCAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

237

Amino Acids

26.83

Weight (kDa)

9.66

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_anti-codon PF01336 148 - 231 5.7e-09 OB-fold nucleic acid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017624)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14680
malus_domestica MD05G1229500.v1.1
prunus_persica Prupe.4G132100_v2.0.a1
pyrus_communis pycom05g21040
rosa_chinensis RchiOBHm_Chr5g0024171
rosa_laevigata RLG00000032776
rosa_multiflora Rmu_sc0004033.1_g000010
rosa_rugosa Rorug05G0082200
rosa_samantha Rh5BG169400 Rh5CG185300 Rh5DG171700
rosa_wichuraiana Rw5G015590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 6 cut(s) 43, 70, 195, 213, 231, 569
AcsI RAATTY 2 cut(s) 375, 578
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 3 cut(s) 283, 303, 541
AgsI TTSAA 3 cut(s) 22, 369, 484
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 405
ApoI RAATTY 2 cut(s) 375, 578
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 454, 623
AvaII GGWCC 1 cut(s) 658
BanI GGYRCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 257, 585
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 4 cut(s) 70, 213, 231, 406
BlsI GCNGC 4 cut(s) 71, 214, 232, 407
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 3 cut(s) 275, 590, 659
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 3 cut(s) 343, 538, 594
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 131, 161, 275, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 303, 541
Bse3DI GCAATG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 293
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 283, 303, 541
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 653
BseRI GAGGAG 4 cut(s) 77, 329, 407, 478
BseXI GCAGC 1 cut(s) 392
BshNI GGYRCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 3 cut(s) 283, 303, 541
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 671
Bsp1286I GDGCHC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 677
BspACI CCGC 6 cut(s) 43, 70, 195, 213, 231, 569
BspCNI CTCAG 1 cut(s) 654
BspEI TCCGGA 1 cut(s) 349
BspLI GGNNCC 3 cut(s) 275, 590, 659
BspQI GCTCTTC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 1 cut(s) 677
BssNI GRCGYC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 30, 122
BstACI GRCGYC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 1 cut(s) 662
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 1 cut(s) 680
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 677
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 293
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 658
Csp6I GTAC 1 cut(s) 686
CviJI RGCY 4 cut(s) 40, 405, 545, 589
CviKI_1 RGCY 4 cut(s) 40, 405, 545, 589
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 1 cut(s) 662
DinI GGCGCC 1 cut(s) 275
DpnI GATC 1 cut(s) 679
DpnII GATC 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 30, 122
EarI CTCTTC 2 cut(s) 30, 122
EciI GGCGGA 2 cut(s) 184, 584
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 119
FaiI YATR 7 cut(s) 75, 123, 387, 399, 507, 600, 712
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 671
Fnu4HI GCNGC 4 cut(s) 70, 213, 231, 406
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 4 cut(s) 70, 213, 231, 406
FspBI CTAG 2 cut(s) 257, 585
GlaI GCGC 1 cut(s) 275
GluI GCNGC 4 cut(s) 70, 213, 231, 406
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 277
HapII CCGG 1 cut(s) 350
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 274
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 5 cut(s) 182, 262, 346, 480, 572
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 454, 623
Hpy188I TCNGA 4 cut(s) 139, 345, 562, 577
Hpy188III TCNNGA 2 cut(s) 52, 350
HpyAV CCTTC 4 cut(s) 316, 395, 509, 696
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 2 cut(s) 290, 427
HpyCH4V TGCA 4 cut(s) 408, 475, 551, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 1 cut(s) 662
HpySE526I ACGT 2 cut(s) 290, 427
Hsp92I GRCGYC 1 cut(s) 274
HspAI GCGC 1 cut(s) 274
KasI GGCGCC 1 cut(s) 273
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 677
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 45, 594
LpnPI CCDG 6 cut(s) 65, 363, 438, 624, 651, 674
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 3 cut(s) 343, 538, 594
MaeI CTAG 2 cut(s) 257, 585
MaeII ACGT 2 cut(s) 290, 427
MaeIII GTNAC 2 cut(s) 286, 436
MalI GATC 1 cut(s) 679
MboI GATC 1 cut(s) 677
MboII GAAGA 6 cut(s) 17, 47, 109, 159, 331, 493
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 5 cut(s) 207, 375, 537, 556, 578
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 1 cut(s) 191
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 497
MslI CAYNNNNRTG 2 cut(s) 298, 597
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 411
NarI GGCGCC 1 cut(s) 274
NdeII GATC 1 cut(s) 677
NlaIV GGNNCC 3 cut(s) 275, 590, 659
PciSI GCTCTTC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 4 cut(s) 262, 346, 480, 572
PflMI CCANNNNNTGG 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 4 cut(s) 71, 214, 232, 407
PleI GAGTC 1 cut(s) 190
PluTI GGCGCC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 658
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 275, 590, 659
PspPI GGNCC 1 cut(s) 658
PspPPI RGGWCCY 1 cut(s) 658
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 2 cut(s) 298, 597
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 30
SatI GCNGC 4 cut(s) 70, 213, 231, 406
Sau3AI GATC 1 cut(s) 677
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 3 cut(s) 343, 538, 594
SfoI GGCGCC 1 cut(s) 275
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 298, 597
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 5 cut(s) 207, 375, 537, 556, 578
SsiI CCGC 6 cut(s) 43, 70, 195, 213, 231, 569
SspDI GGCGCC 1 cut(s) 273
SspMI CTAG 2 cut(s) 257, 585
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 2 cut(s) 293, 430
TaqI TCGA 1 cut(s) 491
TasI AATT 5 cut(s) 207, 375, 537, 556, 578
TauI GCSGC 3 cut(s) 72, 215, 233
TfiI GAWTC 4 cut(s) 262, 346, 480, 572
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 405
TspDTI ATGAA 2 cut(s) 386, 414
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 2 cut(s) 375, 578
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 2 cut(s) 257, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.