Rorug05G0128900

RNA exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013135
Physical Location & Seq
Reverse (-)
11468517 .. 11468801
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0128900.1

Sequence Viewer

Length: 285 bp
ATGGGTCGCTTTGTTTCGGGTTTTCACGACAGCGTTGGCTTCCTTGATCTGCTGCCTGTGCTCACTAGGTTCTTGCCTCCGAAAATGGCTGTACTTGCAGATCGATCAAATCCTCCTCCAAATTCTGGCCAAGCTGCTGGAGCCGAATCAGAAGCCGAGCTCGTTGGTCTGCAAGCGGTGGCTGAGCCTCCAGGGCCGGCTTGTGAGGTCCGTGAAGGTGAAAGATTGGAGCTTTGTGGAATCGGGTCGGGTTATTTCAAGGTTTCCGATCTTGACCCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RNase_T

Protein Analysis

94

Amino Acids

9.81

Weight (kDa)

4.52

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15080
fragaria_vesca FvH4_3g19101 FvH4_3g19101 FvH4_3g19102
malus_domestica MD03G1236600.v1.1
prunus_persica Prupe.4G172700_v2.0.a1
pyrus_communis pycom03g18260
rosa_chinensis RchiOBHm_Chr5g0031901
rosa_laevigata RLG00000033357
rosa_multiflora Rmu_co8498065.1_g000001
rosa_roxburghii Rroxscaffold_1G00048360
rosa_rugosa Rorug05G0128900 Rorug05G0129000
rosa_samantha Rh5AG223000 Rh5BG223100 Rh5CG246300 Rh5DG228000
rosa_wichuraiana Rw5G020310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 2 cut(s) 190, 277
AluBI AGCT 3 cut(s) 134, 160, 232
AluI AGCT 3 cut(s) 134, 160, 232
Alw21I GWGCWC 2 cut(s) 63, 162
AoxI GGCC 2 cut(s) 127, 194
ApeKI GCWGC 2 cut(s) 52, 134
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 194, 208
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 129
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 63, 162
BbvI GCAGC 2 cut(s) 39, 121
BciT130I CCWGG 2 cut(s) 192, 279
BfaI CTAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 53, 135
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 2 cut(s) 54, 136
Bme1390I CCNGG 2 cut(s) 192, 279
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 194, 208
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 192, 279
BpmI CTGGAG 2 cut(s) 159, 174
Bpu1102I GCTNAGC 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 191, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 196
BseBI CCWGG 2 cut(s) 192, 279
BseCI ATCGAT 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 191, 277
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 39, 121
BshFI GGCC 2 cut(s) 129, 196
BshVI ATCGAT 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 63, 162
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 2 cut(s) 129, 196
Bsp1286I GDGCHC 2 cut(s) 63, 162
Bsp143I GATC 4 cut(s) 46, 100, 104, 268
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 129, 196
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 191, 277
BssMI GATC 4 cut(s) 46, 100, 104, 268
Bst2UI CCWGG 2 cut(s) 192, 279
BstC8I GCNNGC 2 cut(s) 174, 198
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 4 cut(s) 49, 103, 107, 271
BstMBI GATC 4 cut(s) 46, 100, 104, 268
BstMWI GCNNNNNNNGC 4 cut(s) 58, 95, 140, 193
BstNI CCWGG 2 cut(s) 192, 279
BstSCI CCNGG 2 cut(s) 190, 277
BstV1I GCAGC 2 cut(s) 39, 121
BstXI CCANNNNNNTGG 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 103
BsuRI GGCC 2 cut(s) 129, 196
BsuTUI ATCGAT 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 174, 198
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 194, 208
ClaI ATCGAT 1 cut(s) 103
Csp6I GTAC 1 cut(s) 92
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 183
DpnI GATC 4 cut(s) 48, 102, 106, 270
DpnII GATC 4 cut(s) 46, 100, 104, 268
EaeI YGGCCR 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 190, 277
EcoT38I GRGCYC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 53, 135
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 53, 135
FspBI CTAG 1 cut(s) 66
GluI GCNGC 2 cut(s) 53, 135
GsuI CTGGAG 2 cut(s) 159, 174
HaeIII GGCC 2 cut(s) 129, 196
HapII CCGG 1 cut(s) 197
HinfI GANTC 2 cut(s) 146, 240
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 81, 151, 268
Hpy188III TCNNGA 2 cut(s) 26, 272
HpyAV CCTTC 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 98, 172
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 95, 140, 193
HpyF3I CTNAG 1 cut(s) 183
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 4 cut(s) 46, 100, 104, 268
LmnI GCTCC 2 cut(s) 140, 229
LpnPI CCDG 7 cut(s) 69, 111, 123, 177, 204, 210, 264
Lsp1109I GCAGC 2 cut(s) 39, 121
MaeI CTAG 1 cut(s) 66
MalI GATC 4 cut(s) 48, 102, 106, 270
MboI GATC 4 cut(s) 46, 100, 104, 268
MhlI GDGCHC 2 cut(s) 63, 162
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 1 cut(s) 121
MluNI TGGCCA 1 cut(s) 129
MnlI CCTC 5 cut(s) 87, 123, 126, 198, 199
Mox20I TGGCCA 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 196
MscI TGGCCA 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 129
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 192, 279
MvaI CCWGG 2 cut(s) 192, 279
MwoI GCNNNNNNNGC 4 cut(s) 58, 95, 140, 193
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 4 cut(s) 46, 100, 104, 268
NgoMIV GCCGGC 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 146, 240
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 2 cut(s) 54, 136
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 190, 277
PspGI CCWGG 2 cut(s) 190, 277
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 194, 208
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 2 cut(s) 53, 135
Sau3AI GATC 4 cut(s) 46, 100, 104, 268
Sau96I GGNCC 2 cut(s) 194, 208
ScrFI CCNGG 2 cut(s) 192, 279
SduI GDGCHC 2 cut(s) 63, 162
SetI ASST 8 cut(s) 71, 136, 162, 210, 220, 234, 264, 283
SinI GGWCC 1 cut(s) 208
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 190, 277
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 121
TatI WGTACW 1 cut(s) 91
TfiI GAWTC 2 cut(s) 146, 240
TseI GCWGC 2 cut(s) 52, 134
TspGWI ACGGA 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 121
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.