Rorug05G0167700

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004050
Physical Location & Seq
Reverse (-)
15570153 .. 15572976
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0167700.1

Sequence Viewer

Length: 663 bp
ATGTTGCTCCAATTTTGGAGCATTTCCAGCTGTGGTGCATTTCACAATTCTTGGGCTCTCACTCACTCAGGAAAGCACCATAATCTCATGTTTGACAAACCTCTCTGCCTCAGAAAGTCAAAACCATCCACACCCTTTTGCCTGAAAGCTCAGTTAGTAGATGAATTCGCTCAACTTGCCCATAACAAGGTTTTGGTTGCAGCTGGAGTTTGTGGGGTAATTGGGCAGCTGTCCAAGCCTTTCACTAATGTAATTCTGTATGGCAAAGAGTTTGATTTCAAGTCAACCCTTCAGGCCGGAGGCTTCCCTTCCACGCATTCCTCTGCAATGGTGGCTACTGCAACAACGCTTGGCCTTGAAAGGGGGCTGTCAGATTCGATATTTGGCTTGACTGTTGTTTATGCAGGCATTGTGATGTATGATGCCCAGGGGGTGAGAAGAGAAGCTGGAAACCACGCAAGAGTACTGAACAAAATACTGCCTCAAATTACAAGGGCGAACACAATCCCATCCCAAGATAGAGGAACTGATGCTGAAGAAGGTTTAGAAAGAGCTGGAAGTTTTACTCCATTGAAAGAAACGATTGGCCACACTGAAGTTGAAGTCACAGCCGGTGCTCTTTTGGGTTTCTTAGTAGGCTTGGCAGTGTATACCACGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

220

Amino Acids

23.65

Weight (kDa)

8.36

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 61 - 212 4.8e-38 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 3 cut(s) 275, 555, 615
AdeI CACNNNGTG 1 cut(s) 660
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 187, 361
AgsI TTSAA 4 cut(s) 280, 359, 574, 602
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 6 cut(s) 30, 149, 203, 229, 446, 554
AluI AGCT 6 cut(s) 30, 149, 203, 229, 446, 554
Alw21I GWGCWC 1 cut(s) 619
AoxI GGCC 3 cut(s) 294, 352, 586
ApeKI GCWGC 2 cut(s) 200, 226
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 445
BalI TGGCCA 1 cut(s) 588
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 2 cut(s) 212, 238
BccI CCATC 2 cut(s) 133, 517
BciT130I CCWGG 1 cut(s) 428
BisI GCNGC 2 cut(s) 201, 227
BlsI GCNGC 2 cut(s) 202, 228
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 412, 520
BpmI CTGGAG 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 426, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 361
Bse118I RCCGGY 1 cut(s) 611
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 426, 427
BseGI GGATG 2 cut(s) 125, 509
BseLI CCNNNNNNNGG 2 cut(s) 187, 361
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 81, 124, 164
BseXI GCAGC 2 cut(s) 212, 238
BshFI GGCC 3 cut(s) 296, 354, 588
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 2 cut(s) 297, 612
BslI CCNNNNNNNGG 2 cut(s) 187, 361
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 3 cut(s) 296, 354, 588
Bsp1286I GDGCHC 2 cut(s) 58, 619
BspANI GGCC 3 cut(s) 296, 354, 588
BspCNI CTCAG 3 cut(s) 80, 123, 163
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 611
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 2 cut(s) 426, 427
BssNAI GTATAC 1 cut(s) 651
Bst1107I GTATAC 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 4 cut(s) 67, 110, 150, 631
BstF5I GGATG 2 cut(s) 125, 509
BstMWI GCNNNNNNNGC 4 cut(s) 27, 176, 235, 332
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 212, 238
BstZ17I GTATAC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 296, 354, 588
BtsCI GGATG 2 cut(s) 125, 509
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 591, 651
Cac8I GCNNGC 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 611
Csp6I GTAC 1 cut(s) 464
CviAII CATG 1 cut(s) 88
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 4 cut(s) 67, 110, 150, 631
DraIII CACNNNGTG 1 cut(s) 660
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 58
Eco57I CTGAAG 3 cut(s) 275, 555, 615
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 81, 89, 183, 261, 402, 420, 651
FatI CATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 2 cut(s) 201, 227
FokI GGATG 2 cut(s) 112, 496
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 201, 227
GluI GCNGC 2 cut(s) 201, 227
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 3 cut(s) 296, 354, 588
HapII CCGG 2 cut(s) 297, 612
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 1 cut(s) 374
HpaII CCGG 2 cut(s) 297, 612
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 285, 651
Hpy188I TCNGA 2 cut(s) 113, 373
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 2 cut(s) 285, 651
HpyAV CCTTC 3 cut(s) 299, 318, 533
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 656
HpyCH4V TGCA 5 cut(s) 38, 200, 326, 341, 404
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 176, 235, 332
HpyF3I CTNAG 4 cut(s) 67, 110, 150, 631
HpySE526I ACGT 1 cut(s) 656
Hsp92II CATG 1 cut(s) 91
LmnI GCTCC 2 cut(s) 12, 18
Lsp1109I GCAGC 2 cut(s) 212, 238
LweI GCATC 2 cut(s) 412, 520
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 1 cut(s) 604
MboII GAAGA 2 cut(s) 450, 548
MhlI GDGCHC 2 cut(s) 58, 619
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 6 cut(s) 11, 46, 164, 219, 252, 486
MluNI TGGCCA 1 cut(s) 588
MnlI CCTC 6 cut(s) 111, 119, 293, 331, 492, 515
Mox20I TGGCCA 1 cut(s) 588
MscI TGGCCA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 588
MspA1I CMGCKG 3 cut(s) 30, 203, 229
MspI CCGG 2 cut(s) 297, 612
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 27, 176, 235, 332
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 604
PasI CCCWGGG 1 cut(s) 427
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 202, 228
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PvuII CAGCTG 3 cut(s) 30, 203, 229
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 413
SatI GCNGC 2 cut(s) 201, 227
ScaI AGTACT 1 cut(s) 465
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 58, 619
SfaNI GCATC 2 cut(s) 412, 520
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 6 cut(s) 11, 46, 164, 219, 252, 486
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 659
TaqI TCGA 1 cut(s) 377
TasI AATT 6 cut(s) 11, 46, 164, 219, 252, 486
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 1 cut(s) 374
TscAI CASTG 2 cut(s) 598, 651
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 2 cut(s) 200, 226
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 598, 651
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 650
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.