Rorug05G0167800

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004050
Physical Location & Seq
Forward (+)
15574765 .. 15579266
4502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0167800.1

Sequence Viewer

Length: 2340 bp
ATGAAACCCCTCCTCCGCCCCATCCACTACTTCATTCCCAAACCCCCATGGCGGCGCCGCTACTCCCACACCCAACCAGACCCATCTCCCACCGCCCATGACCTCCTCACCATCCTCAACAAATCCGACGGCGCTGAATCCCTGATCTCACACCTCTCCAATAACAAGCTCATCTCTCTGATCCAAGAACACCACACAAACCCACAATTGGGCTTTCGCCTCTTCATCTGGGCCACCCAAAGATCCAAGCTTTGCACCCGAATGTGTCGTTCCACAGTGATCGACATGCTCCTGGAGGACGATAATGGTGTTGAACTCTACTGGAGGACTCTGGAGGAGTTCAGAGATTCCGGGATTCGAATCGGGTGTGATGCATTTTCTGTGCTGATCAGAGGGTATGACAAGCTGGGCATTGCCGAGAAGGCGGTGGAGGCTTTTTCAAGGATGAAGGATTTCGATTGTAAGCCTGATGTTTATACTTACAATGCGGTTTTATATGTTTTGGTGAGGAAAGAAGTGTTTTTGTTAGCTTTAGCTGTGTATAACCAAATGTTGAAGTGTAATCTTAGTCCCAGTAGGACTACCTATAGCATTTTGATCAATGGGTTTTGCAAGAGTAGGAAAACCCAGGATGCGATTCAGATGTTTGATGAGATGACACAGAGAGGGATTGCACCCAATACCGTTACTTATACTATTATCATTTCCGGGTTGTGCAAGGCAAAGAGGGCCCATGATGCGCATAGGCTGGTCGATACGATGAAGGAAACTGGGTGTACTCCTGATGTGATTACTTACCATGCTTTGCTTGATGGGTATTGTAAGTTAGGTAGGCTTGACGAAGCTTACGCGCTCGTGAGGTTGTTGCAGAGGGATGGTTATGTTCTTGGAGTGGAGGGATATAGTTCCTTGATTTTGGGTTTGTTTAGAGCTAGGAGGTTTGATGAGGCACATGAGTTGTATGGGAAGTTGATCGATGAGGGGATTAAGCTTGACGTTATCTTGTGTACTATATTGATTAAGGGGCTGGCAGACGCTGGCAGGGTTACGGATGCTCTGAACTTCTTGAGTGAGATGAGTAAGAAAGGTTTGGTTCCAGATGCATACTGTTATAATGCTGTCATCAAAGGGTTCTGCGATTTAGGTCTTTTGGATGAAGCTCGATCTCTCCATCTTGAGATTTCGAAGCAAGATTGCTTCCCTAATGCCTGCACTTACACCATTCTCATTTGTGGTATGTGCAGGAATGGGCTGATAGGGGAAGCAGCACAGATATTCAATGAGATGGAGAAGCTTGGATGTGTTCCTTCTGTTGTAACCTTCAATGCTCTTATTGATGGGCTTTGTAAGGCTTCTAAGCTTGAGGATGCACAGTTGCTGTTTTACAAGATGGAGATAGGAAAAAAACCTTCGTTATTTCTTCGTCTTTCTCAAGGTAGTGATCGGGTTATTGATAGTGCGAGTCTTCAAAAGAAGGTGGAGCAATTGTGCGAGTCAGGATTGATTCTTCAGGCCTATAAACTTCTGATGCAGCTAGCTAGTAGTGGGGTTGCCCCCGACGTCATCACTTACAACACTCTAATCAATGGGTTTTGCAAAAATGGAAACATAGATGGTGCTTTCAAACTCTTCAAGGATATGCAATTGAAAGGGATCGCCCCAGATTCTGTTACATATGGAACACTTATAGATGGACTTCAAAGGGTTGAAAGAGAAGAAGATGCCTTTGTGGTCTTTAATCAAATGGTGAAGAATGGATGCACACCTAGCTCTGAAGTTTACAAATCACTGATGACTTGGTCTTGCAGGAATAGCAAGGTTTCGGTAGCTGTTAGTCTTTGGTTGAAGTACCTGAGCAGCCTTCCTCACAGAGAAGAGGAAGCAATCAAAGCAATAGAGGAAAATTTTAAAGAGGGGCAAATTGAGAAGGCGATCCAAGGCTTACTTGAAATGGATGTAAAGTTTAAAGATTTAGATTTAGGACCATACACTATTTTGCTCATTGGTTTGTGTCAGGTGCAAAGAGTGGGTGAAGCTCTGAGAATGTTTTCTGTACTTCAGGAGTACAAAGTCAATGTCACTCCACCAAGTTGTGTGCACTTGATAAATGGTCTCTGCAAAGAAGGGAATTTGGACCTGGCAATAAATGTTTTCCATTATACTCTGGAGAGGGGTTTCATGTTAATGCCCGAAATATGCAATAAGCTGCTCAAGTGTCTTCTTCGTTCCCGAGACAAAAAGGACCGTGCCTTTGATCTCATTCGTAGGATGAGAAATTTTGGATATGATCTTGATGCTTGTCTTCACCAGACTACAAAGTTACTTCTACAATTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

779

Amino Acids

88.03

Weight (kDa)

8.11

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 111 - 169 1e-05 Pentatricopeptide repeat domain
PPR_2 PF13041 126 - 168 3.6e-07 PPR repeat family
PPR_2 PF13041 160 - 205 4.4e-11 PPR repeat family
PPR_long PF17177 176 - 287 1.2e-12 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 188 - 220 3.2e-10 PPR repeat
PPR PF01535 195 - 224 5.6e-08 PPR repeat
PPR_2 PF13041 199 - 240 4e-16 PPR repeat family
PPR_3 PF13812 215 - 273 8.5e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 222 - 255 2.5e-11 PPR repeat
PPR_2 PF13041 232 - 275 1.1e-12 PPR repeat family
PPR_1 PF12854 258 - 287 5.9e-11 PPR repeat
PPR_2 PF13041 298 - 344 4.8e-06 PPR repeat family
PPR_3 PF13812 325 - 378 3.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 332 - 380 3.6e-13 PPR repeat family
PPR_1 PF12854 362 - 389 1.9e-07 PPR repeat
PPR_2 PF13041 369 - 415 5.8e-12 PPR repeat family
PPR_3 PF13812 393 - 446 1.3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 398 - 430 2.4e-12 PPR repeat
PPR_2 PF13041 401 - 450 8.9e-18 PPR repeat family
PPR PF01535 405 - 434 9.3e-08 PPR repeat
PPR_1 PF12854 433 - 465 2.4e-11 PPR repeat
PPR_2 PF13041 436 - 465 7.4e-06 PPR repeat family
PPR PF01535 439 - 465 9.5e-06 PPR repeat
PPR_2 PF13041 496 - 533 7.5e-09 PPR repeat family
PPR_long PF17177 502 - 637 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 508 - 563 2.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 516 - 548 1.4e-16 PPR repeat
PPR_2 PF13041 519 - 566 5.3e-21 PPR repeat family
PPR PF01535 522 - 552 9.1e-11 PPR repeat
PPR_3 PF13812 542 - 598 8.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 550 - 583 3.7e-07 PPR repeat
PPR_2 PF13041 561 - 603 7.2e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AatII GACGTC 1 cut(s) 1563
Acc16I TGCGCA 1 cut(s) 741
AccB1I GGYRCC 1 cut(s) 54
AccII CGCG 1 cut(s) 851
AciI CCGC 6 cut(s) 16, 52, 58, 93, 425, 488
AclWI GGATC 4 cut(s) 175, 237, 1661, 1927
AcsI RAATTY 3 cut(s) 1903, 2128, 2275
AcuI CTGAAG 3 cut(s) 1493, 1794, 2042
AcyI GRCGYC 2 cut(s) 55, 1560
AfaI GTAC 5 cut(s) 778, 1009, 1850, 2055, 2066
AfiI CCNNNNNNNGG 3 cut(s) 51, 208, 209
AjnI CCWGG 3 cut(s) 291, 627, 2136
Alw21I GWGCWC 1 cut(s) 2100
Alw26I GTCTC 2 cut(s) 2117, 2226
Alw44I GTGCAC 1 cut(s) 2096
AlwI GGATC 4 cut(s) 175, 237, 1661, 1927
AlwNI CAGNNNCTG 3 cut(s) 1037, 1378, 1667
Ama87I CYCGRG 1 cut(s) 2229
AoxI GGCC 3 cut(s) 231, 729, 1512
ApaI GGGCCC 1 cut(s) 733
ApaLI GTGCAC 1 cut(s) 2096
ApeKI GCWGC 4 cut(s) 1265, 1531, 1857, 2206
ApoI RAATTY 3 cut(s) 1903, 2128, 2275
ArsI GACNNNNNNTTYG 4 cut(s) 2061, 2093, 2234, 2266
Asp700I GAANNNNTTC 2 cut(s) 452, 2047
AspLEI GCGC 4 cut(s) 57, 134, 742, 853
AspS9I GGNCC 6 cut(s) 231, 729, 730, 1982, 2134, 2242
AsuC2I CCSGG 2 cut(s) 352, 709
AsuHPI GGTGA 5 cut(s) 100, 517, 1759, 2042, 2297
AsuII TTCGAA 2 cut(s) 358, 1184
AsuNHI GCTAGC 1 cut(s) 1534
AvaI CYCGRG 1 cut(s) 2229
AvaII GGWCC 3 cut(s) 1982, 2134, 2242
BaeGI GKGCMC 2 cut(s) 733, 2100
BanI GGYRCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 733
BauI CACGAG 1 cut(s) 854
BbsI GAAGAC 3 cut(s) 1457, 2210, 2294
Bbv12I GWGCWC 1 cut(s) 2100
BbvI GCAGC 4 cut(s) 1277, 1543, 1869, 2193
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 3 cut(s) 293, 629, 2138
BclI TGATCA 2 cut(s) 387, 597
BcnI CCSGG 2 cut(s) 352, 709
BcoDI GTCTC 2 cut(s) 2117, 2226
BfaI CTAG 5 cut(s) 933, 1535, 1539, 1767, 2338
BfmI CTRYAG 1 cut(s) 586
BfoI RGCGCY 2 cut(s) 58, 135
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 6 cut(s) 53, 58, 1266, 1532, 1858, 2207
BlsI GCNGC 6 cut(s) 54, 59, 1267, 1533, 1859, 2208
Bme1390I CCNGG 5 cut(s) 293, 352, 629, 709, 2138
Bme18I GGWCC 3 cut(s) 1982, 2134, 2242
BmeT110I CYCGRG 1 cut(s) 2229
BmgT120I GGNCC 6 cut(s) 231, 729, 730, 1982, 2134, 2242
BmiI GGNNCC 3 cut(s) 56, 731, 1095
BmrFI CCNGG 5 cut(s) 293, 352, 629, 709, 2138
BmrI ACTGGG 2 cut(s) 567, 780
BmtI GCTAGC 1 cut(s) 1538
BmuI ACTGGG 2 cut(s) 567, 780
BpiI GAAGAC 3 cut(s) 1457, 2210, 2294
BpmI CTGGAG 4 cut(s) 314, 343, 353, 2186
Bpu10I CCTNAGC 1 cut(s) 1853
Bpu14I TTCGAA 2 cut(s) 358, 1184
BpuEI CTTGAG 5 cut(s) 1087, 1196, 1382, 1416, 2195
BpuMI CCSGG 2 cut(s) 352, 709
Bsa29I ATCGAT 1 cut(s) 975
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 2 cut(s) 55, 1560
BsaI GGTCTC 1 cut(s) 2117
BsaJI CCNNGG 3 cut(s) 47, 627, 1936
BsaXI ACNNNNNCTCC 3 cut(s) 27, 1472, 1502
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 208, 209
Bse1I ACTGG 3 cut(s) 326, 573, 775
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 3 cut(s) 293, 629, 2138
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 3 cut(s) 47, 627, 1936
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 51, 208, 209
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 2 cut(s) 1844, 2030
BseNI ACTGG 3 cut(s) 326, 573, 775
BseRI GAGGAG 2 cut(s) 95, 350
BseSI GKGCMC 2 cut(s) 733, 2100
BseXI GCAGC 4 cut(s) 1277, 1543, 1869, 2193
BseYI CCCAGC 1 cut(s) 406
BsgI GTGCAG 2 cut(s) 1195, 1261
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 3 cut(s) 233, 731, 1514
BshNI GGYRCC 1 cut(s) 54
BshVI ATCGAT 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 2100
BsiHKCI CYCGRG 1 cut(s) 2229
BsiSI CCGG 2 cut(s) 351, 708
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 3 cut(s) 51, 208, 209
BsmAI GTCTC 2 cut(s) 2117, 2226
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 3 cut(s) 233, 731, 1514
Bso31I GGTCTC 1 cut(s) 2117
BsoBI CYCGRG 1 cut(s) 2229
Bsp119I TTCGAA 2 cut(s) 358, 1184
Bsp120I GGGCCC 1 cut(s) 729
Bsp1286I GDGCHC 2 cut(s) 733, 2100
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 6 cut(s) 16, 52, 58, 93, 425, 488
BspANI GGCC 3 cut(s) 233, 731, 1514
BspCNI CTCAG 2 cut(s) 1845, 2031
BspDI ATCGAT 1 cut(s) 975
BspFNI CGCG 1 cut(s) 851
BspLI GGNNCC 3 cut(s) 56, 731, 1095
BspOI GCTAGC 1 cut(s) 1538
BspPI GGATC 4 cut(s) 175, 237, 1661, 1927
BspT104I TTCGAA 2 cut(s) 358, 1184
BspT107I GGYRCC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 2117
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 3 cut(s) 326, 573, 775
BssECI CCNNGG 3 cut(s) 47, 627, 1936
BssNI GRCGYC 2 cut(s) 55, 1560
BssSI CACGAG 1 cut(s) 854
BssT1I CCWWGG 2 cut(s) 47, 1936
Bst2BI CACGAG 1 cut(s) 854
Bst2UI CCWGG 3 cut(s) 293, 629, 2138
Bst4CI ACNGT 5 cut(s) 277, 685, 1109, 1374, 2246
Bst6I CTCTTC 3 cut(s) 227, 1634, 1869
BstACI GRCGYC 2 cut(s) 55, 1560
BstBI TTCGAA 2 cut(s) 358, 1184
BstC8I GCNNGC 4 cut(s) 1029, 1039, 1210, 1536
BstDEI CTNAG 4 cut(s) 566, 1356, 1853, 2039
BstDSI CCRYGG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 851
BstH2I RGCGCY 2 cut(s) 58, 135
BstHHI GCGC 4 cut(s) 57, 134, 742, 853
BstMAI GTCTC 2 cut(s) 2117, 2226
BstMWI GCNNNNNNNGC 7 cut(s) 422, 431, 728, 737, 1767, 1812, 1889
BstNI CCWGG 3 cut(s) 293, 629, 2138
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 5 cut(s) 291, 350, 627, 707, 2136
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 2 cut(s) 733, 2100
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 4 cut(s) 1277, 1543, 1869, 2193
BstV2I GAAGAC 3 cut(s) 1457, 2210, 2294
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 975
BsuRI GGCC 3 cut(s) 233, 731, 1514
BsuTUI ATCGAT 1 cut(s) 975
BtgI CCRYGG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 282, 1787
Cac8I GCNNGC 4 cut(s) 1029, 1039, 1210, 1536
CaiI CAGNNNCTG 3 cut(s) 1037, 1378, 1667
CfoI GCGC 4 cut(s) 57, 134, 742, 853
Cfr13I GGNCC 6 cut(s) 231, 729, 730, 1982, 2134, 2242
ClaI ATCGAT 1 cut(s) 975
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 5 cut(s) 777, 1008, 1849, 2054, 2065
CviAII CATG 7 cut(s) 48, 98, 286, 734, 800, 953, 2179
CviQI GTAC 5 cut(s) 777, 1008, 1849, 2054, 2065
DdeI CTNAG 4 cut(s) 566, 1356, 1853, 2039
DinI GGCGCC 1 cut(s) 56
DraI TTTAAA 2 cut(s) 1909, 1966
Eam1104I CTCTTC 3 cut(s) 227, 1634, 1869
EarI CTCTTC 3 cut(s) 227, 1634, 1869
EciI GGCGGA 1 cut(s) 5
Eco130I CCWWGG 2 cut(s) 47, 1936
Eco147I AGGCCT 1 cut(s) 1514
Eco24I GRGCYC 1 cut(s) 733
Eco31I GGTCTC 1 cut(s) 2117
Eco47I GGWCC 3 cut(s) 1982, 2134, 2242
Eco57I CTGAAG 3 cut(s) 1493, 1794, 2042
Eco88I CYCGRG 1 cut(s) 2229
EcoO109I RGGNCCY 1 cut(s) 729
EcoRII CCWGG 3 cut(s) 291, 627, 2136
EcoT14I CCWWGG 2 cut(s) 47, 1936
EcoT22I ATGCAT 2 cut(s) 376, 1105
EcoT38I GRGCYC 1 cut(s) 733
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 47, 1936
FaeI CATG 7 cut(s) 51, 101, 289, 737, 803, 956, 2182
FalI AAGNNNNNCTT 2 cut(s) 1929, 1961
FaqI GGGAC 1 cut(s) 555
FatI CATG 7 cut(s) 47, 97, 285, 733, 799, 952, 2178
FauNDI CATATG 1 cut(s) 1675
FbaI TGATCA 2 cut(s) 387, 597
Fnu4HI GCNGC 6 cut(s) 53, 58, 1266, 1532, 1858, 2207
FriOI GRGCYC 1 cut(s) 733
Fsp4HI GCNGC 6 cut(s) 53, 58, 1266, 1532, 1858, 2207
FspAI RTGCGCAY 1 cut(s) 741
FspBI CTAG 5 cut(s) 933, 1535, 1539, 1767, 2338
FspI TGCGCA 1 cut(s) 741
GlaI GCGC 4 cut(s) 56, 133, 741, 852
GluI GCNGC 6 cut(s) 53, 58, 1266, 1532, 1858, 2207
GsaI CCCAGC 1 cut(s) 410
GsuI CTGGAG 4 cut(s) 314, 343, 353, 2186
HaeII RGCGCY 2 cut(s) 58, 135
HaeIII GGCC 3 cut(s) 233, 731, 1514
HapII CCGG 2 cut(s) 351, 708
HgaI GACGC 1 cut(s) 1043
HhaI GCGC 4 cut(s) 57, 134, 742, 853
Hin1I GRCGYC 2 cut(s) 55, 1560
Hin1II CATG 7 cut(s) 51, 101, 289, 737, 803, 956, 2182
Hin6I GCGC 4 cut(s) 55, 132, 740, 851
HinP1I GCGC 4 cut(s) 55, 132, 740, 851
HindIII AAGCTT 5 cut(s) 248, 843, 989, 1292, 1358
HpaII CCGG 2 cut(s) 351, 708
HphI GGTGA 5 cut(s) 100, 517, 1759, 2042, 2297
Hpy166II GTNNAC 4 cut(s) 777, 1008, 1780, 2098
Hpy188I TCNGA 9 cut(s) 127, 180, 344, 392, 642, 1059, 1527, 1774, 2040
Hpy8I GTNNAC 4 cut(s) 777, 1008, 1780, 2098
Hpy99I CGWCG 2 cut(s) 131, 1562
HpyCH4III ACNGT 5 cut(s) 277, 685, 1109, 1374, 2246
HpyCH4IV ACGT 2 cut(s) 996, 1560
HpyF10VI GCNNNNNNNGC 7 cut(s) 422, 431, 728, 737, 1767, 1812, 1889
HpyF3I CTNAG 4 cut(s) 566, 1356, 1853, 2039
HpySE526I ACGT 2 cut(s) 996, 1560
Hsp92I GRCGYC 2 cut(s) 55, 1560
Hsp92II CATG 7 cut(s) 51, 101, 289, 737, 803, 956, 2182
HspAI GCGC 4 cut(s) 55, 132, 740, 851
KasI GGCGCC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 387, 597
LmnI GCTCC 2 cut(s) 294, 1480
Lsp1109I GCAGC 4 cut(s) 1277, 1543, 1869, 2193
MaeI CTAG 5 cut(s) 933, 1535, 1539, 1767, 2338
MaeII ACGT 2 cut(s) 996, 1560
MaeIII GTNAC 6 cut(s) 685, 1045, 1315, 1669, 2077, 2319
MfeI CAATTG 3 cut(s) 206, 1484, 1643
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 733, 2100
MluCI AATT 8 cut(s) 206, 1484, 1643, 1903, 1920, 2128, 2275, 2330
Mly113I GGCGCC 1 cut(s) 55
MlyI GAGTC 3 cut(s) 322, 1471, 1502
MmeI TCCRAC 1 cut(s) 150
Mph1103I ATGCAT 2 cut(s) 376, 1105
MroXI GAANNNNTTC 2 cut(s) 452, 2047
MseI TTAA 6 cut(s) 987, 1020, 1737, 1908, 1965, 2183
MslI CAYNNNNRTG 2 cut(s) 260, 2183
MspI CCGG 2 cut(s) 351, 708
MspR9I CCNGG 5 cut(s) 293, 352, 629, 709, 2138
MunI CAATTG 3 cut(s) 206, 1484, 1643
MvaI CCWGG 3 cut(s) 293, 629, 2138
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 7 cut(s) 422, 431, 728, 737, 1767, 1812, 1889
NarI GGCGCC 1 cut(s) 55
NciI CCSGG 2 cut(s) 352, 709
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 1675
NheI GCTAGC 1 cut(s) 1534
NlaIII CATG 7 cut(s) 51, 101, 289, 737, 803, 956, 2182
NlaIV GGNNCC 3 cut(s) 56, 731, 1095
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 2077
NsbI TGCGCA 1 cut(s) 741
NsiI ATGCAT 2 cut(s) 376, 1105
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 2 cut(s) 358, 1184
PceI AGGCCT 1 cut(s) 1514
PdmI GAANNNNTTC 2 cut(s) 452, 2047
PfeI GAWTC 7 cut(s) 137, 347, 355, 360, 637, 1504, 1664
PflFI GACNNNGTC 1 cut(s) 1798
PfoI TCCNGGA 2 cut(s) 291, 350
PkrI GCNGC 6 cut(s) 54, 59, 1267, 1533, 1859, 2208
PleI GAGTC 3 cut(s) 322, 1470, 1501
PluTI GGCGCC 1 cut(s) 58
PpsI GAGTC 3 cut(s) 322, 1470, 1501
PsiI TTATAA 1 cut(s) 1113
Psp6I CCWGG 3 cut(s) 291, 627, 2136
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 3 cut(s) 291, 627, 2136
PspN4I GGNNCC 3 cut(s) 56, 731, 1095
PspOMI GGGCCC 1 cut(s) 729
PspPI GGNCC 6 cut(s) 231, 729, 730, 1982, 2134, 2242
PstNI CAGNNNCTG 3 cut(s) 1037, 1378, 1667
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 1798
RsaI GTAC 5 cut(s) 778, 1009, 1850, 2055, 2066
RsaNI GTAC 5 cut(s) 777, 1008, 1849, 2054, 2065
RseI CAYNNNNRTG 2 cut(s) 260, 2183
SaqAI TTAA 6 cut(s) 987, 1020, 1737, 1908, 1965, 2183
SatI GCNGC 6 cut(s) 53, 58, 1266, 1532, 1858, 2207
Sau96I GGNCC 6 cut(s) 231, 729, 730, 1982, 2134, 2242
SchI GAGTC 3 cut(s) 322, 1471, 1502
ScrFI CCNGG 5 cut(s) 293, 352, 629, 709, 2138
SduI GDGCHC 2 cut(s) 733, 2100
SfcI CTRYAG 1 cut(s) 586
SfoI GGCGCC 1 cut(s) 56
SfuI TTCGAA 2 cut(s) 358, 1184
SinI GGWCC 3 cut(s) 1982, 2134, 2242
SmiMI CAYNNNNRTG 2 cut(s) 260, 2183
SmlI CTYRAG 5 cut(s) 1066, 1175, 1361, 1431, 2210
SmoI CTYRAG 5 cut(s) 1066, 1175, 1361, 1431, 2210
Sse9I AATT 8 cut(s) 206, 1484, 1643, 1903, 1920, 2128, 2275, 2330
SseBI AGGCCT 1 cut(s) 1514
SsiI CCGC 6 cut(s) 16, 52, 58, 93, 425, 488
SspDI GGCGCC 1 cut(s) 54
SspMI CTAG 5 cut(s) 933, 1535, 1539, 1767, 2338
StuI AGGCCT 1 cut(s) 1514
StyD4I CCNGG 5 cut(s) 291, 350, 627, 707, 2136
StyI CCWWGG 2 cut(s) 47, 1936
TaaI ACNGT 5 cut(s) 277, 685, 1109, 1374, 2246
TaiI ACGT 2 cut(s) 999, 1563
TaqI TCGA 7 cut(s) 282, 358, 456, 753, 975, 1162, 1184
TasI AATT 8 cut(s) 206, 1484, 1643, 1903, 1920, 2128, 2275, 2330
TatI WGTACW 4 cut(s) 776, 1007, 2053, 2064
TauI GCSGC 2 cut(s) 55, 60
TfiI GAWTC 7 cut(s) 137, 347, 355, 360, 637, 1504, 1664
Tru1I TTAA 6 cut(s) 987, 1020, 1737, 1908, 1965, 2183
Tru9I TTAA 6 cut(s) 987, 1020, 1737, 1908, 1965, 2183
TscAI CASTG 2 cut(s) 282, 1794
TseFI GTSAC 1 cut(s) 2077
TseI GCWGC 4 cut(s) 1265, 1531, 1857, 2206
Tsp45I GTSAC 1 cut(s) 2077
TspDTI ATGAA 7 cut(s) 17, 22, 214, 461, 776, 1170, 2167
TspGWI ACGGA 1 cut(s) 1064
TspRI CASTG 2 cut(s) 282, 1794
Tth111I GACNNNGTC 1 cut(s) 1798
VneI GTGCAC 1 cut(s) 2096
VpaK11BI GGWCC 3 cut(s) 1982, 2134, 2242
XapI RAATTY 3 cut(s) 1903, 2128, 2275
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 452, 2047
XspI CTAG 5 cut(s) 933, 1535, 1539, 1767, 2338
ZraI GACGTC 1 cut(s) 1561
Zsp2I ATGCAT 2 cut(s) 376, 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.