Rorug05G0324200

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
38908151 .. 38909959
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0324200.1

Sequence Viewer

Length: 438 bp
ATGAAAGAAAGGGAGAAGAGAACCCGGGAAGAAGGAAGAGAAGGAGAAGAGACAAACCGGAAGCTCTTGACTAAAACAACACAAGTGGAAGTTTCGCAGCAGAAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCACAGTGGCGGAGGTTTCATCTTCGCCGACGAGTTTTTTGTCTGTACCGGAATTCGCAGTCAATCCTCTCTCTCAGTTTTGCATTTCTCAGTTTTGGCTGGGTGGACAAAGATATTCAAGGGAGGATTGGCAAAGAACAAGCGGTTCTTTGCTTTGCTCAGCTCACTGGCATTGATGCAGAGAGGGAAACTCTATGTTGGATATTATGTGGCTGTGAAGGGGTTCTCTGCTTTGCTTATCAGCATTGAGACGAAGGAGCTGGTGATAGTTTTTCTTGGAGAAATTGAGCTCATTTGA

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

9.3

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 150, 283
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 2 cut(s) 119, 187
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 5 cut(s) 64, 136, 303, 400, 430
AluI AGCT 5 cut(s) 64, 136, 303, 400, 430
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 44, 383
Ama87I CYCGRG 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 192
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
Asp700I GAANNNNTTC 1 cut(s) 362
AsuC2I CCSGG 2 cut(s) 25, 26
AsuHPI GGTGA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 24
BanII GRGCYC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 25, 26
BcoDI GTCTC 2 cut(s) 44, 383
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 25, 26
BmeT110I CYCGRG 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 25, 26
BmsI GCATC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 315, 347
Bpu1102I GCTNAGC 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 25, 26
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 2 cut(s) 57, 188
Bse1I ACTGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 24
BseMII CTCAG 3 cut(s) 228, 243, 313
BseNI ACTGG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 3 cut(s) 25, 58, 189
BsmAI GTCTC 2 cut(s) 44, 383
BsmBI CGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 299
BspACI CCGC 2 cut(s) 150, 283
BspCNI CTCAG 3 cut(s) 227, 242, 312
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 3 cut(s) 11, 31, 42
BstDEI CTNAG 3 cut(s) 214, 229, 299
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 44, 383
BstMBI GATC 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 23, 24
BstV1I GCAGC 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 151, 305
Cfr9I CCCGGG 1 cut(s) 24
Csp6I GTAC 2 cut(s) 118, 186
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviJI RGCY 7 cut(s) 64, 136, 239, 303, 353, 400, 430
CviKI_1 RGCY 7 cut(s) 64, 136, 239, 303, 353, 400, 430
CviQI GTAC 2 cut(s) 118, 186
DdeI CTNAG 3 cut(s) 214, 229, 299
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 11, 31, 42
EarI CTCTTC 3 cut(s) 11, 31, 42
EciI GGCGGA 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 383
FaiI YATR 2 cut(s) 336, 348
FalI AAGNNNNNCTT 2 cut(s) 272, 304
Fnu4HI GCNGC 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 243
HapII CCGG 3 cut(s) 25, 58, 189
HpaII CCGG 3 cut(s) 25, 58, 189
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 26, 35, 352, 388
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 223, 319
HpyF3I CTNAG 3 cut(s) 214, 229, 299
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 6 cut(s) 38, 71, 202, 225, 293, 386
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 306
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 6 cut(s) 28, 41, 48, 59, 115, 154
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 2 cut(s) 192, 423
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 5 cut(s) 117, 146, 217, 257, 317
MroXI GAANNNNTTC 1 cut(s) 362
MspI CCGG 3 cut(s) 25, 58, 189
MspR9I CCNGG 2 cut(s) 25, 26
NciI CCSGG 2 cut(s) 25, 26
NdeII GATC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 239
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
RsaI GTAC 2 cut(s) 119, 187
RsaNI GTAC 2 cut(s) 118, 186
SacI GAGCTC 1 cut(s) 432
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 25, 26
SduI GDGCHC 1 cut(s) 432
SetI ASST 7 cut(s) 66, 128, 138, 157, 305, 402, 432
SfaNI GCATC 1 cut(s) 306
SmaI CCCGGG 1 cut(s) 26
Sse9I AATT 2 cut(s) 192, 423
SsiI CCGC 2 cut(s) 150, 283
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 23, 24
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 192, 423
TscAI CASTG 2 cut(s) 151, 312
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 17, 148
TspMI CCCGGG 1 cut(s) 24
TspRI CASTG 2 cut(s) 151, 312
XapI RAATTY 1 cut(s) 192
XmaI CCCGGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.