Rorug06G0060500

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
8126809 .. 8128897
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0060500.1

Sequence Viewer

Length: 1155 bp
ATGTTCCCGAAGCATTGTTATGAAGAATACAAAGATGTTGAGGAAGCTCATTATGCCTACAGGGTTCGTGAGCGCCTGCGGAAACAGGTACTCATTCCTCTGCGCAAAGCCTTAAAATTATCATCGGTGGAGATGAAGAATACGTTGGCTTTCGAAAACAGCAAAGCCTTTAATGGTTTGAAAATATACAAGGAGATTTCTAACCATGGTTATCTAAAGGGAAGCAAATTACTATTTCAAAAGTGCATGAAGCTTGTGGAGATGTTTGGGAATCCAAGCATTGGTGACGGGCTGAAACTTCCTAACGATATTGTAGCTTCCTTGATGGGCAAGGAACATAGTGATGACGTTGTGGAGCGTCAATGGCGGAAACTAGTCCAAGAGTTGTCAAACCAAGGCAAGCTGAGGAATTGTCTTGCCGTGTGTGACCTTCCCTTGAACATGAGAGGGACATACAAGGAGACAGCTTGTATTTCACTGGGGTTATTGATTTCAGAGCTGAGCGAAAATCCATGGAAAGGAAAGGTTTTCTCATTCAATGAAACTCCAACACTTCAAAAGATCGAAGGAGACGATCTTGAATCCAAGTGTGAGTTCATGAGACACAACATAGAGTGTGGAGACAAAGTTGATTTCTTCAAGATTTACAACCAAGTCTTGCAAATTGCCATTGAACAAAAGCTAAGCAACGAGCAGTTGCCCAAGAGGATTTTTGTGTTCACTTATAGGGATTTCGAGGCGGCTTCCAAGAACAATTGGGCTGAAGATTATAAAGAGGCATGGACTAATTACAGAAGAAGAGGGTACGCAAATGTACCACTGGTGGAGGCTAGGACTCAATACAAAAAGAAAGGGTACAAAACTCTGCCACACATTTTGTTTTGGAATCTTAAGAATTTCATTGTTGAGCCAGAGATAATTTGTAGCCCTGTTAATAACAAATGTGGGGGGCTGATTATAACTGGGTTGTCGAACAGTTTGATCAGTATGTTCTTAGTGGGAGAGTCGGATTCGAGAACATATGCACCTCATGTCCAGGCACCTTATGGTATCGGTTCGCTGTCGGTACTGAAATTTCTTCCCAAAGCAGAGGATGTGATGAAATCTGTATTTTTGAGAGATGAATTATTAAAGAACCTCCTTATATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

44.28

Weight (kDa)

8.9

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 1 - 135 3.5e-13 Domain of unknown function (DUF2828)
DUF7788 PF25043 137 - 335 9.5e-37 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017372)

Species Orthologous Gene IDs
malus_domestica MD10G1053500.v1.1
prunus_persica Prupe.8G066900_v2.0.a1
pyrus_communis pycom10g04050
rosa_chinensis RchiOBHm_Chr6g0271361
rosa_laevigata RLG00000013727
rosa_multiflora Rmu_sc0004866.1_g000028
rosa_roxburghii Rroxscaffold_7G00197070
rosa_rugosa Rorug06G0060500
rosa_samantha Rh6AG179600 Rh6BG182600 Rh6CG179500 Rh6DG171200
rosa_wichuraiana Rw6G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 771, 959
Acc16I TGCGCA 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 3 cut(s) 79, 367, 740
AcsI RAATTY 2 cut(s) 895, 1073
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 5 cut(s) 90, 806, 816, 857, 1068
AfiI CCNNNNNNNGG 3 cut(s) 281, 518, 1147
AflII CTTAAG 1 cut(s) 890
AgsI TTSAA 8 cut(s) 181, 239, 439, 538, 557, 581, 640, 674
AhlI ACTAGT 1 cut(s) 373
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 578, 610
AluBI AGCT 7 cut(s) 47, 253, 317, 403, 467, 499, 682
AluI AGCT 7 cut(s) 47, 253, 317, 403, 467, 499, 682
Alw26I GTCTC 4 cut(s) 455, 564, 595, 615
ApoI RAATTY 2 cut(s) 895, 1073
AspLEI GCGC 2 cut(s) 75, 105
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 153
BanI GGYRCC 1 cut(s) 1039
BbvCI CCTCAGC 1 cut(s) 404
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 1037
BclI TGATCA 1 cut(s) 981
BcoDI GTCTC 4 cut(s) 455, 564, 595, 615
BcuI ACTAGT 1 cut(s) 373
BfaI CTAG 2 cut(s) 374, 831
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 890
BisI GCNGC 1 cut(s) 741
BlpI GCTNAGC 2 cut(s) 500, 683
BlsI GCNGC 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 1037
BmiI GGNNCC 1 cut(s) 1041
BmrFI CCNGG 1 cut(s) 1037
BmrI ACTGGG 2 cut(s) 488, 972
BmuI ACTGGG 2 cut(s) 488, 972
Bpu10I CCTNAGC 1 cut(s) 404
Bpu1102I GCTNAGC 2 cut(s) 500, 683
Bpu14I TTCGAA 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 205, 394, 512
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 518, 1147
Bse1I ACTGG 3 cut(s) 483, 825, 967
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 3 cut(s) 205, 394, 512
BseGI GGATG 1 cut(s) 1099
BseLI CCNNNNNNNGG 3 cut(s) 281, 518, 1147
BseMII CTCAG 2 cut(s) 395, 491
BseNI ACTGG 3 cut(s) 483, 825, 967
BshNI GGYRCC 1 cut(s) 1039
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 3 cut(s) 281, 518, 1147
BsmAI GTCTC 4 cut(s) 455, 564, 595, 615
BsmBI CGTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 463
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 3 cut(s) 561, 574, 981
Bsp1720I GCTNAGC 2 cut(s) 500, 683
Bsp19I CCATGG 2 cut(s) 205, 512
BspACI CCGC 3 cut(s) 79, 367, 740
BspCNI CTCAG 2 cut(s) 396, 492
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 1 cut(s) 1041
BspT104I TTCGAA 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 1039
BspTI CTTAAG 1 cut(s) 890
BsrI ACTGG 3 cut(s) 483, 825, 967
BssECI CCNNGG 3 cut(s) 205, 394, 512
BssMI GATC 3 cut(s) 561, 574, 981
BssT1I CCWWGG 3 cut(s) 205, 394, 512
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 1 cut(s) 977
Bst6I CTCTTC 1 cut(s) 793
BstAFI CTTAAG 1 cut(s) 890
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 77, 401
BstDEI CTNAG 4 cut(s) 404, 500, 683, 994
BstDSI CCRYGG 2 cut(s) 205, 512
BstF5I GGATG 1 cut(s) 1099
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 2 cut(s) 75, 105
BstKTI GATC 3 cut(s) 564, 577, 984
BstMAI GTCTC 4 cut(s) 455, 564, 595, 615
BstMBI GATC 3 cut(s) 561, 574, 981
BstMWI GCNNNNNNNGC 2 cut(s) 53, 364
BstNI CCWGG 1 cut(s) 1037
BstSCI CCNGG 1 cut(s) 1035
BstSFI CTRYAG 1 cut(s) 58
BtgI CCRYGG 2 cut(s) 205, 512
BtsCI GGATG 1 cut(s) 1099
BtsIMutI CAGTG 2 cut(s) 476, 818
Cac8I GCNNGC 2 cut(s) 77, 401
CciI TCATGA 1 cut(s) 597
CfoI GCGC 2 cut(s) 75, 105
CseI GACGC 1 cut(s) 347
Csp6I GTAC 5 cut(s) 89, 805, 815, 856, 1067
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CviAII CATG 7 cut(s) 206, 247, 442, 513, 598, 780, 1031
CviQI GTAC 5 cut(s) 89, 805, 815, 856, 1067
DdeI CTNAG 4 cut(s) 404, 500, 683, 994
DpnI GATC 3 cut(s) 563, 576, 983
DpnII GATC 3 cut(s) 561, 574, 981
Eam1104I CTCTTC 1 cut(s) 793
EarI CTCTTC 1 cut(s) 793
EciI GGCGGA 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 205, 394, 512
Eco57I CTGAAG 1 cut(s) 783
EcoRII CCWGG 1 cut(s) 1035
EcoT14I CCWWGG 3 cut(s) 205, 394, 512
ErhI CCWWGG 3 cut(s) 205, 394, 512
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 7 cut(s) 209, 250, 445, 516, 601, 783, 1034
FaqI GGGAC 1 cut(s) 463
FatI CATG 7 cut(s) 205, 246, 441, 512, 597, 779, 1030
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 1 cut(s) 1106
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 2 cut(s) 374, 831
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 2 cut(s) 74, 104
GluI GCNGC 1 cut(s) 741
HaeII RGCGCY 1 cut(s) 76
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 75, 105
Hin1II CATG 7 cut(s) 209, 250, 445, 516, 601, 783, 1034
Hin6I GCGC 2 cut(s) 73, 103
HinP1I GCGC 2 cut(s) 73, 103
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 6 cut(s) 271, 581, 835, 886, 1004, 1010
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 720
Hpy188I TCNGA 2 cut(s) 496, 1009
Hpy188III TCNNGA 6 cut(s) 7, 68, 578, 598, 640, 1014
Hpy8I GTNNAC 1 cut(s) 720
HpyAV CCTTC 2 cut(s) 440, 560
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4IV ACGT 2 cut(s) 143, 348
HpyCH4V TGCA 3 cut(s) 246, 661, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 364
HpyF3I CTNAG 4 cut(s) 404, 500, 683, 994
HpySE526I ACGT 2 cut(s) 143, 348
Hsp92II CATG 7 cut(s) 209, 250, 445, 516, 601, 783, 1034
HspAI GCGC 2 cut(s) 73, 103
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 3 cut(s) 561, 574, 981
LmnI GCTCC 1 cut(s) 355
MaeI CTAG 2 cut(s) 374, 831
MaeII ACGT 2 cut(s) 143, 348
MaeIII GTNAC 2 cut(s) 284, 425
MalI GATC 3 cut(s) 563, 576, 983
MboI GATC 3 cut(s) 561, 574, 981
MboII GAAGA 7 cut(s) 35, 148, 628, 776, 807, 810, 1070
MfeI CAATTG 1 cut(s) 754
MlyI GAGTC 2 cut(s) 829, 1013
MmeI TCCRAC 2 cut(s) 572, 987
MseI TTAA 5 cut(s) 113, 171, 891, 933, 1130
MslI CAYNNNNRTG 2 cut(s) 18, 342
MspCI CTTAAG 1 cut(s) 890
MspR9I CCNGG 1 cut(s) 1037
MunI CAATTG 1 cut(s) 754
MvaI CCWGG 1 cut(s) 1037
MwoI GCNNNNNNNGC 2 cut(s) 53, 364
NcoI CCATGG 2 cut(s) 205, 512
NdeI CATATG 1 cut(s) 1021
NdeII GATC 3 cut(s) 561, 574, 981
NlaIII CATG 7 cut(s) 209, 250, 445, 516, 601, 783, 1034
NlaIV GGNNCC 1 cut(s) 1041
NmuCI GTSAC 2 cut(s) 284, 425
NsbI TGCGCA 1 cut(s) 104
NspV TTCGAA 1 cut(s) 153
PagI TCATGA 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PfeI GAWTC 4 cut(s) 271, 581, 886, 1010
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 2 cut(s) 829, 1012
PpsI GAGTC 2 cut(s) 829, 1012
PsiI TTATAA 2 cut(s) 771, 959
Psp6I CCWGG 1 cut(s) 1035
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 1 cut(s) 1041
RsaI GTAC 5 cut(s) 90, 806, 816, 857, 1068
RsaNI GTAC 5 cut(s) 89, 805, 815, 856, 1067
RseI CAYNNNNRTG 2 cut(s) 18, 342
SaqAI TTAA 5 cut(s) 113, 171, 891, 933, 1130
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 3 cut(s) 561, 574, 981
SchI GAGTC 2 cut(s) 829, 1013
ScrFI CCNGG 1 cut(s) 1037
SfcI CTRYAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 18, 342
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SpeI ACTAGT 1 cut(s) 373
SsiI CCGC 3 cut(s) 79, 367, 740
SspMI CTAG 2 cut(s) 374, 831
StyD4I CCNGG 1 cut(s) 1035
StyI CCWWGG 3 cut(s) 205, 394, 512
TaaI ACNGT 1 cut(s) 977
TaiI ACGT 2 cut(s) 146, 351
TaqI TCGA 5 cut(s) 153, 564, 735, 971, 1013
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 4 cut(s) 271, 581, 886, 1010
Tru1I TTAA 5 cut(s) 113, 171, 891, 933, 1130
Tru9I TTAA 5 cut(s) 113, 171, 891, 933, 1130
TscAI CASTG 2 cut(s) 483, 825
TseFI GTSAC 2 cut(s) 284, 425
Tsp45I GTSAC 2 cut(s) 284, 425
TspDTI ATGAA 8 cut(s) 36, 149, 263, 555, 586, 889, 1115, 1137
TspRI CASTG 2 cut(s) 483, 825
Van91I CCANNNNNTGG 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 890
XapI RAATTY 2 cut(s) 895, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XspI CTAG 2 cut(s) 374, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.