Rh6AG179600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017372
Physical Location & Seq
Reverse (-)
31128134 .. 31131362
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG179600.1

Sequence Viewer

Length: 858 bp
ATGGCTGCAGCAACGGATCCAGCAGTTACACAGTACTCACATACTGCTCTACCGCCAATACTGACAAGCGTCAAGAAGCTTTCAGAGTCATCACAAGTCACTTCTATTCCTTCGACTTATACATACCCCGTTAATCCTCAAGATGAGTCAGTTTTGACAGATTACGATTCAAAAATCCCCATCGTTGACTTCTCTCTTCTCACATCTGGTACTCCGGAGCAGAGGTCCAAAGCCATCAGCGACCTTGGTAAAGCATGCGAGGACTGGGGCTTTTTCCTGGTGATCAATCATGGTGTTCCTGAGGAGCTGATGAAAGCGGTCATGGATGGAAGTTTAAGATTTTTTTATCTGAGTGAGGAGGAGAAGCACGAGTATCAAGGGAAGCATGTATTGGACCCGATAAGGTGTGGCACCAGCTTCAATGCTTCGGTGGATAAAGTCTTGTTTTGGAGAGATTTTCTCAAGGTTTTTGTATACCCTGAGTTTCACTTCCCTGATAAACCCGCTGGCTTCAGTCAACTTTCATCCGAGTATTGCAAGAGAACAAGAGAAGTTACAAGGGAACTACTAAAAGGAATATCACTGAGCTTAGGATTGGAGGCTGACTACTTAGATACGGCCTTAAATGTGAAATCCGAAGGTTTACAGGTCTTCATTGCAAACTTGTATCCTCCTTGCCCACAGCCAGAGCTTGCACTGGGCATGCCCCCTCATTCTGATCATGGCCTCCTCACCCTCCTCATTCAAAATGGAATTAATGGCCTTCAAGTGCAACACAATGGTAAGTGGGTCAATGTCAACGCCATACCCAACTCCTTTCTTGTTAACACTGGCGATCACCTTGAGGTACGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

285

Amino Acids

31.73

Weight (kDa)

5.25

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 59 - 161 1.4e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 216 - 283 1.1e-19 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017372)

Species Orthologous Gene IDs
malus_domestica MD10G1053500.v1.1
prunus_persica Prupe.8G066900_v2.0.a1
pyrus_communis pycom10g04050
rosa_chinensis RchiOBHm_Chr6g0271361
rosa_laevigata RLG00000013727
rosa_multiflora Rmu_sc0004866.1_g000028
rosa_roxburghii Rroxscaffold_7G00197070
rosa_rugosa Rorug06G0060500
rosa_samantha Rh6AG179600 Rh6BG182600 Rh6CG179500 Rh6DG171200
rosa_wichuraiana Rw6G015440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 410
AccI GTMKAC 1 cut(s) 474
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 3 cut(s) 53, 317, 504
AclWI GGATC 2 cut(s) 11, 24
AcuI CTGAAG 1 cut(s) 496
AfaI GTAC 3 cut(s) 35, 211, 849
AgsI TTSAA 4 cut(s) 171, 421, 746, 767
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 5 cut(s) 79, 307, 417, 588, 691
AluI AGCT 5 cut(s) 79, 307, 417, 588, 691
AlwI GGATC 2 cut(s) 11, 24
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 3 cut(s) 618, 724, 760
ApeKI GCWGC 2 cut(s) 5, 8
AseI ATTAAT 1 cut(s) 756
AspS9I GGNCC 2 cut(s) 225, 394
AsuHPI GGTGA 3 cut(s) 292, 724, 830
AvaII GGWCC 2 cut(s) 225, 394
AxyI CCTNAGG 1 cut(s) 300
BaeI ACNNNNGTAYC 1 cut(s) 839
BamHI GGATCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 410
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 643
BbvI GCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 188, 242, 320
BceAI ACGGC 1 cut(s) 633
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 2 cut(s) 282, 718
BfmI CTRYAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 2 cut(s) 225, 394
BmgT120I GGNCC 2 cut(s) 225, 394
BmiI GGNNCC 3 cut(s) 18, 396, 412
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 2 cut(s) 274, 707
BmuI ACTGGG 2 cut(s) 274, 707
BoxI GACNNNNGTC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 643
BplI GAGNNNNNCTC 2 cut(s) 444, 476
Bpu10I CCTNAGC 1 cut(s) 589
BpuEI CTTGAG 2 cut(s) 123, 446
BsaAI YACGTR 1 cut(s) 851
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bse1I ACTGG 3 cut(s) 269, 702, 835
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 331, 524
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 4 cut(s) 291, 341, 471, 575
BseNI ACTGG 3 cut(s) 269, 702, 835
BseRI GAGGAG 5 cut(s) 317, 371, 374, 719, 728
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 3 cut(s) 620, 726, 762
BshNI GGYRCC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 3 cut(s) 620, 726, 762
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 4 cut(s) 16, 282, 718, 835
BspACI CCGC 3 cut(s) 53, 317, 504
BspANI GGCC 3 cut(s) 620, 726, 762
BspCNI CTCAG 4 cut(s) 292, 342, 472, 576
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 18, 396, 412
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 11, 24
BspT107I GGYRCC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 3 cut(s) 269, 702, 835
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 16, 282, 718, 835
BssNAI GTATAC 1 cut(s) 475
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 851
BstC8I GCNNGC 4 cut(s) 256, 508, 693, 704
BstDEI CTNAG 6 cut(s) 300, 350, 480, 584, 589, 610
BstF5I GGATG 2 cut(s) 331, 524
BstKTI GATC 4 cut(s) 19, 285, 721, 838
BstMBI GATC 4 cut(s) 16, 282, 718, 835
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 3 cut(s) 258, 389, 706
BstPAI GACNNNNGTC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 6
BstSNI TACGTA 1 cut(s) 851
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 3 cut(s) 620, 726, 762
BtsCI GGATG 2 cut(s) 331, 524
BtsIMutI CAGTG 3 cut(s) 581, 695, 828
Cac8I GCNNGC 4 cut(s) 256, 508, 693, 704
Cfr13I GGNCC 2 cut(s) 225, 394
CseI GACGC 1 cut(s) 58
Csp6I GTAC 3 cut(s) 34, 210, 848
CviAII CATG 6 cut(s) 255, 290, 322, 386, 703, 722
CviQI GTAC 3 cut(s) 34, 210, 848
DdeI CTNAG 6 cut(s) 300, 350, 480, 584, 589, 610
DpnI GATC 4 cut(s) 18, 284, 720, 837
DpnII GATC 4 cut(s) 16, 282, 718, 835
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco105I TACGTA 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 225, 394
Eco57I CTGAAG 1 cut(s) 496
Eco81I CCTNAGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 6 cut(s) 258, 293, 325, 389, 706, 725
FatI CATG 6 cut(s) 254, 289, 321, 385, 702, 721
FauI CCCGC 1 cut(s) 511
FbaI TGATCA 2 cut(s) 282, 718
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 338, 511
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 3 cut(s) 620, 726, 762
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 58
Hin1II CATG 6 cut(s) 258, 293, 325, 389, 706, 725
HincII GTYRAC 4 cut(s) 187, 518, 799, 826
HindII GTYRAC 4 cut(s) 187, 518, 799, 826
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 3 cut(s) 86, 146, 167
HpaI GTTAAC 1 cut(s) 826
HpaII CCGG 1 cut(s) 215
HphI GGTGA 3 cut(s) 292, 724, 830
Hpy166II GTNNAC 6 cut(s) 187, 475, 518, 644, 799, 826
Hpy188I TCNGA 5 cut(s) 85, 351, 529, 637, 718
Hpy188III TCNNGA 4 cut(s) 73, 140, 215, 299
Hpy8I GTNNAC 6 cut(s) 187, 475, 518, 644, 799, 826
HpyAV CCTTC 3 cut(s) 120, 632, 773
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 850
HpyCH4V TGCA 5 cut(s) 8, 537, 659, 695, 772
HpyF3I CTNAG 6 cut(s) 300, 350, 480, 584, 589, 610
HpySE526I ACGT 1 cut(s) 850
Hsp92II CATG 6 cut(s) 258, 293, 325, 389, 706, 725
Kpn2I TCCGGA 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 282, 718
KspAI GTTAAC 1 cut(s) 826
Kzo9I GATC 4 cut(s) 16, 282, 718, 835
LmnI GCTCC 2 cut(s) 217, 304
Lsp1109I GCAGC 1 cut(s) 20
MaeII ACGT 1 cut(s) 850
MaeIII GTNAC 3 cut(s) 25, 97, 553
MalI GATC 4 cut(s) 18, 284, 720, 837
MboI GATC 4 cut(s) 16, 282, 718, 835
MboII GAAGA 2 cut(s) 188, 643
MflI RGATCY 1 cut(s) 16
MluCI AATT 1 cut(s) 753
MlyI GAGTC 2 cut(s) 95, 155
MroI TCCGGA 1 cut(s) 214
MseI TTAA 5 cut(s) 132, 335, 623, 756, 825
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
NdeII GATC 4 cut(s) 16, 282, 718, 835
NlaIII CATG 6 cut(s) 258, 293, 325, 389, 706, 725
NlaIV GGNNCC 3 cut(s) 18, 396, 412
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 3 cut(s) 258, 389, 706
PaeI GCATGC 2 cut(s) 258, 706
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 2 cut(s) 94, 154
PpsI GAGTC 2 cut(s) 94, 154
Ppu21I YACGTR 1 cut(s) 851
PshAI GACNNNNGTC 1 cut(s) 68
PshBI ATTAAT 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 18, 396, 412
PspPI GGNCC 2 cut(s) 225, 394
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 3 cut(s) 35, 211, 849
RsaNI GTAC 3 cut(s) 34, 210, 848
SaqAI TTAA 5 cut(s) 132, 335, 623, 756, 825
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 4 cut(s) 16, 282, 718, 835
Sau96I GGNCC 2 cut(s) 225, 394
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 2 cut(s) 95, 155
ScrFI CCNGG 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 2 cut(s) 225, 394
SmlI CTYRAG 3 cut(s) 138, 461, 842
SmoI CTYRAG 3 cut(s) 138, 461, 842
SnaBI TACGTA 1 cut(s) 851
SphI GCATGC 2 cut(s) 258, 706
Sse9I AATT 1 cut(s) 753
SsiI CCGC 3 cut(s) 53, 317, 504
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 853
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 753
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 5 cut(s) 132, 335, 623, 756, 825
Tru9I TTAA 5 cut(s) 132, 335, 623, 756, 825
TscAI CASTG 3 cut(s) 588, 702, 835
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 326, 513, 643
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 3 cut(s) 588, 702, 835
VpaK11BI GGWCC 2 cut(s) 225, 394
VspI ATTAAT 1 cut(s) 756
XceI RCATGY 3 cut(s) 258, 389, 706
XmiI GTMKAC 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.