Rorug06G0167200

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010915
Physical Location & Seq
Forward (+)
24408905 .. 24409538
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0167200.1

Sequence Viewer

Length: 357 bp
ATGGAGTTCTCAAATCTCACCATGGAATCGACAGTGAAGTACGACCTGGTGTTGAAATTCATAGGCTGGACTGGATCTAGAGACGCGGAAGCCGGAGTCGGTGGTGGTGGAGAAGCAAGTGTGGTCCTGGCTGAAAGTGAGGTGGAGGAGGGTGGTGGGGGATTGGGTCGGTTATGGCGTATGGGTTTTGGGAGTGAATTTGTGGATGATAATCATGTAAAGTCAGAACCAGTGTCCCGTGGTGTTGATGCTGATGATGGGGATGGTGTTGAGATTAGGAACAATGATGGCTCCTGTGCTAATAGGATTGGAAATGGACCTAGAAGATCATTCAAACAGCTCGAGCGATCCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.64

Weight (kDa)

4.7

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48740
fragaria_vesca FvH4_2g19020 FvH4_2g19020 FvH4_2g19020 FvH4_2g19020
malus_domestica MD10G1164000.v1.1
prunus_persica Prupe.8G202400_v2.0.a1 Prupe.8G202400_v2.0.a1 Prupe.8G202400_v2.0.a1
pyrus_communis pycom10g14140
rosa_chinensis RchiOBHm_Chr6g0284821
rosa_laevigata RLG00000012713
rosa_multiflora Rmu_sc0000686.1_g000012
rosa_roxburghii Rroxscaffold_7G00184340
rosa_rugosa Rorug06G0167200
rosa_samantha Rh6AG279900 Rh6BG279900 Rh6CG282100 Rh6DG275000
rosa_wichuraiana Rw6G024060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 82, 342
AcsI RAATTY 2 cut(s) 56, 197
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 2 cut(s) 55, 334
AjnI CCWGG 2 cut(s) 45, 126
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 82, 342
Ama87I CYCGRG 1 cut(s) 341
ApoI RAATTY 2 cut(s) 56, 197
AspS9I GGNCC 2 cut(s) 124, 317
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 124, 317
BccI CCATC 3 cut(s) 251, 257, 281
BciT130I CCWGG 2 cut(s) 47, 128
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 78, 321
Bme1390I CCNGG 2 cut(s) 47, 128
Bme18I GGWCC 2 cut(s) 124, 317
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 124, 317
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 47, 128
BmsI GCATC 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 21, 238
Bse1I ACTGG 2 cut(s) 76, 230
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 2 cut(s) 47, 128
BseDI CCNNGG 2 cut(s) 21, 238
BseGI GGATG 2 cut(s) 211, 268
BseJI GATNNNNATC 1 cut(s) 210
BseNI ACTGG 2 cut(s) 76, 230
BseRI GAGGAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 341
Bsp143I GATC 3 cut(s) 74, 326, 347
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 2 cut(s) 82, 342
BsrI ACTGG 2 cut(s) 76, 230
BssECI CCNNGG 2 cut(s) 21, 238
BssMI GATC 3 cut(s) 74, 326, 347
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 47, 128
Bst4CI ACNGT 1 cut(s) 34
BstDSI CCRYGG 2 cut(s) 21, 238
BstF5I GGATG 2 cut(s) 211, 268
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 3 cut(s) 77, 329, 350
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 74, 326, 347
BstNI CCWGG 2 cut(s) 47, 128
BstSCI CCNGG 2 cut(s) 45, 126
BstUI CGCG 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtgI CCRYGG 2 cut(s) 21, 238
BtsCI GGATG 2 cut(s) 211, 268
BtsIMutI CAGTG 2 cut(s) 39, 237
Cfr13I GGNCC 2 cut(s) 124, 317
CseI GACGC 1 cut(s) 92
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 1 cut(s) 40
CviAII CATG 2 cut(s) 22, 215
CviJI RGCY 5 cut(s) 66, 92, 131, 291, 340
CviKI_1 RGCY 5 cut(s) 66, 92, 131, 291, 340
CviQI GTAC 1 cut(s) 40
DpnI GATC 3 cut(s) 76, 328, 349
DpnII GATC 3 cut(s) 74, 326, 347
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 124, 317
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 45, 126
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 2 cut(s) 25, 218
FaiI YATR 5 cut(s) 23, 62, 175, 182, 216
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 21, 214
FokI GGATG 2 cut(s) 218, 275
FspBI CTAG 2 cut(s) 78, 321
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 25, 218
HinfI GANTC 2 cut(s) 26, 96
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 78, 351
HpyCH4III ACNGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 25, 218
Kzo9I GATC 3 cut(s) 74, 326, 347
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 9 cut(s) 32, 52, 57, 59, 106, 113, 140, 243, 307
LweI GCATC 1 cut(s) 238
MabI ACCWGGT 1 cut(s) 45
MaeI CTAG 2 cut(s) 78, 321
MalI GATC 3 cut(s) 76, 328, 349
MboI GATC 3 cut(s) 74, 326, 347
MboII GAAGA 1 cut(s) 336
MflI RGATCY 1 cut(s) 74
MluCI AATT 2 cut(s) 56, 197
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 3 cut(s) 133, 139, 142
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 47, 128
MvaI CCWGG 2 cut(s) 47, 128
MvnI CGCG 1 cut(s) 86
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 74, 326, 347
NlaIII CATG 2 cut(s) 25, 218
NlaIV GGNNCC 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 45, 126
PspGI CCWGG 2 cut(s) 45, 126
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 124, 317
PspXI VCTCGAGB 1 cut(s) 341
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
Sau3AI GATC 3 cut(s) 74, 326, 347
Sau96I GGNCC 2 cut(s) 124, 317
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 47, 128
SetI ASST 4 cut(s) 48, 144, 322, 342
SexAI ACCWGGT 1 cut(s) 45
SfaNI GCATC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 2 cut(s) 124, 317
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 56, 197
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 78, 321
StyD4I CCNGG 2 cut(s) 45, 126
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 29, 342
TasI AATT 2 cut(s) 56, 197
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 2 cut(s) 39, 237
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 2 cut(s) 39, 237
VpaK11BI GGWCC 2 cut(s) 124, 317
XapI RAATTY 2 cut(s) 56, 197
XbaI TCTAGA 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 341
XspI CTAG 2 cut(s) 78, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.