Rh6AG279900

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010915
Physical Location & Seq
Reverse (-)
47449640 .. 47451756
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG279900.1

Sequence Viewer

Length: 1470 bp
ATGGACCTTCTGTGTTTTTGGGTTGGCTTCTTTCTGTTCCTTGGATTTTGGGTAGTTGCTTTCTCTGATCAAGATGGTTTCTTGAGCTTAACTTGTGGTGGAACTAGGAATTACACCGATTCCTCCAATATCTCATGGATTCCAGACAATGAATTCATAGCCACTGGAAACACCACTACCATCACTTACATTGAGGGGACCTCATTTAGTGTCCCGGTTCGGTTTTTCCCAATTCTCCAATCTCACAACTGTTATAGGCTACCAGTGAGTAATGTGTCATTTTTGGTTCTTGTTAGAGCTCAATTTGTGTACAAAGACTATGATGGACTTGGGAAACCCCCATCATTCTCTGTATCTCTTGGCACAGCCATTGTTAGTACTATAGATCTCAGAAAAACCGATCCTTGGATAGAAGAGTTTTTATGGCCAGTTGATAAGGACACAGTCTCTTTTTGTTTGCATAATATACCAGATAGTGGGGTTCCTGTAATTACTTCAATTGAAGTTAGGCCACTTCCCCAAGGAGCTTACACAAGTGGCATGGAAGATTTCCCACATAAGTCACTGAGGAAAAGTTATCGAATAGATTGTGGCAACACAAATGGATCCTTGAGGTATCCGTTGGATCCATATGATCGTATATGGGATGCTGATCAAAGCTTTGCACCATTTCATGTGTCAACTGGTTTTAAGACTCAACTTATTACCTTCAATTTTTGGGGGTTAAAGGAGAGTCTCCCAGCTGATATCCTTCAAACTGCGAGAGTTTTGGCACGGAGGGATGCCTTGACATATAACTTATCTCTTGACACCTTGGCAGACTACTACATTGTCCTCTACTTTGCTGGGATTTTGCCTGTGTTTCCTTCATTCGACATCTTGATTAATGGTGATGTTGCACAATCGAATTATACTGTAAGAAGCTCAGAAGTTAGTGCACTATACTTCACGCAGAGGGGAATAAACAGCTTGAACATCACACTTAAGAGCATCAGCTTCTATCCTCAAATCAATGCAATTGAGGTGTATGAAATTCTTGATATTCCAGAAGAAGCCTCCTCCACCACAGTTTCAGCCCTTCAGGTTATCCAACAGTCAATTGGTTTAGATTTGGGATGGCAAGGTGACCCTTGCTCTCCGATAAAATGGGATCAAGTTGAATGTGAAGGAAACATAGTTACCTCATTGAAGCTTTCAGACATCAACTTGAGGTCAATTAGTCCAGCCATTGGTGACTTGCTGGATCTTAAAACACTGGATTTGCATAACACATCGCTTACCGGTGAACTACAGAATCTGGGTAGCTTGACACGTCTTGAGAAACTGAATATGAGCTTTAATCAGTTAACTTCCTTTGGAACTGAGTTGGACAGCTTGGTTAGCCTTCAAATTCTGGACTTGCAAAACAATACTTTACAGGGAATGGTTCCGGATAGCTTGGCAGAGTTGGAGGATCTTCACTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

489

Amino Acids

54.61

Weight (kDa)

4.47

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 31 - 345 5e-51 Malectin-like domain
LRR_4 PF12799 416 - 454 1.8e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48740
fragaria_vesca FvH4_2g19020 FvH4_2g19020 FvH4_2g19020 FvH4_2g19020
malus_domestica MD10G1164000.v1.1
prunus_persica Prupe.8G202400_v2.0.a1 Prupe.8G202400_v2.0.a1 Prupe.8G202400_v2.0.a1
pyrus_communis pycom10g14140
rosa_chinensis RchiOBHm_Chr6g0284821
rosa_laevigata RLG00000012713
rosa_multiflora Rmu_sc0000686.1_g000012
rosa_roxburghii Rroxscaffold_7G00184340
rosa_rugosa Rorug06G0167200
rosa_samantha Rh6AG279900 Rh6BG279900 Rh6CG282100 Rh6DG275000
rosa_wichuraiana Rw6G024060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 476, 1229
AccIII TCCGGA 1 cut(s) 1429
AclWI GGATC 8 cut(s) 395, 600, 613, 620, 633, 1158, 1251, 1461
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 3 cut(s) 152, 1032, 1389
AcuI CTGAAG 1 cut(s) 1064
AfaI GTAC 2 cut(s) 311, 379
AfiI CCNNNNNNNGG 3 cut(s) 405, 476, 1229
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 1310
AgeI ACCGGT 1 cut(s) 1280
AgsI TTSAA 8 cut(s) 498, 503, 712, 755, 973, 1160, 1189, 1388
AjiI CACGTC 1 cut(s) 1313
Alw21I GWGCWC 2 cut(s) 301, 940
Alw26I GTCTC 2 cut(s) 451, 740
Alw44I GTGCAC 1 cut(s) 936
AlwI GGATC 8 cut(s) 395, 600, 613, 620, 633, 1158, 1251, 1461
AlwNI CAGNNNCTG 1 cut(s) 1297
Aor13HI TCCGGA 1 cut(s) 1429
AoxI GGCC 2 cut(s) 425, 509
ApaLI GTGCAC 1 cut(s) 936
ApoI RAATTY 3 cut(s) 152, 1032, 1389
AseI ATTAAT 1 cut(s) 885
AsiGI ACCGGT 1 cut(s) 1280
AspS9I GGNCC 2 cut(s) 4, 198
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 4 cut(s) 902, 1136, 1244, 1295
AvaII GGWCC 2 cut(s) 4, 198
BaeGI GKGCMC 1 cut(s) 940
BalI TGGCCA 1 cut(s) 427
BamHI GGATCC 2 cut(s) 605, 625
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 301, 940
BccI CCATC 5 cut(s) 68, 188, 317, 349, 1110
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 2 cut(s) 67, 652
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 451, 740
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 2 cut(s) 381, 1289
BfrI CTTAAG 1 cut(s) 983
BfuI GTATCC 1 cut(s) 627
BglII AGATCT 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 4, 198
BmgBI CACGTC 1 cut(s) 1313
BmgT120I GGNCC 2 cut(s) 4, 198
BmiI GGNNCC 5 cut(s) 199, 483, 607, 627, 1428
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 3 cut(s) 637, 772, 999
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpuEI CTTGAG 4 cut(s) 103, 631, 1228, 1337
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 4 cut(s) 40, 404, 520, 813
BsaWI WCCGGW 2 cut(s) 1280, 1429
Bsc4I CCNNNNNNNGG 3 cut(s) 405, 476, 1229
Bse118I RCCGGY 1 cut(s) 1280
Bse1I ACTGG 5 cut(s) 169, 263, 428, 688, 1260
Bse8I GATNNNNATC 1 cut(s) 651
BseAI TCCGGA 1 cut(s) 1429
BseDI CCNNGG 4 cut(s) 40, 404, 520, 813
BseGI GGATG 3 cut(s) 652, 787, 1121
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 3 cut(s) 405, 476, 1229
BseMII CTCAG 4 cut(s) 403, 557, 939, 1353
BseNI ACTGG 5 cut(s) 169, 263, 428, 688, 1260
BseRI GAGGAG 1 cut(s) 1048
BseSI GKGCMC 1 cut(s) 940
BseYI CCCAGC 2 cut(s) 739, 845
BshFI GGCC 2 cut(s) 427, 511
BshTI ACCGGT 1 cut(s) 1280
BsiHKAI GWGCWC 2 cut(s) 301, 940
BsiSI CCGG 3 cut(s) 215, 1281, 1430
BslFI GGGAC 2 cut(s) 197, 211
BslI CCNNNNNNNGG 3 cut(s) 405, 476, 1229
BsmAI GTCTC 2 cut(s) 451, 740
BsmFI GGGAC 2 cut(s) 197, 211
BsnI GGCC 2 cut(s) 427, 511
Bsp1286I GDGCHC 2 cut(s) 301, 940
Bsp13I TCCGGA 1 cut(s) 1429
Bsp1407I TGTACA 1 cut(s) 309
BspANI GGCC 2 cut(s) 427, 511
BspCNI CTCAG 4 cut(s) 402, 558, 938, 1354
BspEI TCCGGA 1 cut(s) 1429
BspLI GGNNCC 5 cut(s) 199, 483, 607, 627, 1428
BspPI GGATC 8 cut(s) 395, 600, 613, 620, 633, 1158, 1251, 1461
BspTI CTTAAG 1 cut(s) 983
BsrFI RCCGGY 1 cut(s) 1280
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 5 cut(s) 169, 263, 428, 688, 1260
BssAI RCCGGY 1 cut(s) 1280
BssECI CCNNGG 4 cut(s) 40, 404, 520, 813
BssT1I CCWWGG 4 cut(s) 40, 404, 520, 813
Bst4CI ACNGT 5 cut(s) 251, 445, 916, 1069, 1095
Bst6I CTCTTC 1 cut(s) 408
BstAFI CTTAAG 1 cut(s) 983
BstAUI TGTACA 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 389, 566, 925, 1362
BstEII GGTNACC 1 cut(s) 1124
BstF5I GGATG 3 cut(s) 652, 787, 1121
BstMAI GTCTC 2 cut(s) 451, 740
BstMWI GCNNNNNNNGC 1 cut(s) 1380
BstPI GGTNACC 1 cut(s) 1124
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 381, 1289
BstSLI GKGCMC 1 cut(s) 940
BstX2I RGATCY 5 cut(s) 385, 605, 625, 1243, 1453
BstYI RGATCY 5 cut(s) 385, 605, 625, 1243, 1453
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 2 cut(s) 427, 511
BtgZI GCGATG 1 cut(s) 1257
BtrI CACGTC 1 cut(s) 1313
BtsCI GGATG 3 cut(s) 652, 787, 1121
BtsIMutI CAGTG 4 cut(s) 162, 270, 563, 1253
CaiI CAGNNNCTG 1 cut(s) 1297
Cfr10I RCCGGY 1 cut(s) 1280
Cfr13I GGNCC 2 cut(s) 4, 198
Csp6I GTAC 2 cut(s) 310, 378
CspAI ACCGGT 1 cut(s) 1280
CviAII CATG 3 cut(s) 135, 541, 674
CviQI GTAC 2 cut(s) 310, 378
DdeI CTNAG 4 cut(s) 389, 566, 925, 1362
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 299
Eco130I CCWWGG 4 cut(s) 40, 404, 520, 813
Eco24I GRGCYC 1 cut(s) 301
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 4, 198
Eco53kI GAGCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 1064
Eco91I GGTNACC 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 1124
EcoRI GAATTC 1 cut(s) 152
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 4 cut(s) 40, 404, 520, 813
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 4 cut(s) 40, 404, 520, 813
FaeI CATG 3 cut(s) 138, 544, 677
FaqI GGGAC 2 cut(s) 197, 211
FatI CATG 3 cut(s) 134, 540, 673
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 2 cut(s) 67, 652
FokI GGATG 3 cut(s) 659, 794, 1128
FriOI GRGCYC 1 cut(s) 301
FspBI CTAG 1 cut(s) 105
GsaI CCCAGC 2 cut(s) 743, 849
HaeIII GGCC 2 cut(s) 427, 511
HapII CCGG 3 cut(s) 215, 1281, 1430
Hin1II CATG 3 cut(s) 138, 544, 677
HincII GTYRAC 2 cut(s) 681, 1347
HindII GTYRAC 2 cut(s) 681, 1347
HindIII AAGCTT 2 cut(s) 658, 1190
HinfI GANTC 5 cut(s) 119, 139, 694, 733, 1294
HpaI GTTAAC 1 cut(s) 1347
HpaII CCGG 3 cut(s) 215, 1281, 1430
HphI GGTGA 4 cut(s) 902, 1136, 1244, 1295
Hpy166II GTNNAC 5 cut(s) 310, 681, 938, 1286, 1347
Hpy188I TCNGA 5 cut(s) 67, 392, 928, 1140, 1198
Hpy8I GTNNAC 5 cut(s) 310, 681, 938, 1286, 1347
HpyAV CCTTC 7 cut(s) 17, 718, 761, 876, 1088, 1160, 1394
HpyCH4III ACNGT 5 cut(s) 251, 445, 916, 1069, 1095
HpyCH4IV ACGT 1 cut(s) 1312
HpyCH4V TGCA 7 cut(s) 460, 665, 899, 938, 1016, 1264, 1402
HpyF10VI GCNNNNNNNGC 1 cut(s) 1380
HpyF3I CTNAG 4 cut(s) 389, 566, 925, 1362
HpySE526I ACGT 1 cut(s) 1312
Hsp92II CATG 3 cut(s) 138, 544, 677
Kpn2I TCCGGA 1 cut(s) 1429
Ksp22I TGATCA 2 cut(s) 67, 652
KspAI GTTAAC 1 cut(s) 1347
LmnI GCTCC 1 cut(s) 524
LweI GCATC 3 cut(s) 637, 772, 999
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 1312
MaeIII GTNAC 4 cut(s) 561, 1124, 1177, 1232
MboII GAAGA 4 cut(s) 425, 557, 1061, 1448
MfeI CAATTG 3 cut(s) 498, 1017, 1098
MflI RGATCY 5 cut(s) 385, 605, 625, 1243, 1453
MhlI GDGCHC 2 cut(s) 301, 940
MlsI TGGCCA 1 cut(s) 427
MluNI TGGCCA 1 cut(s) 427
MlyI GAGTC 2 cut(s) 688, 742
MmeI TCCRAC 4 cut(s) 603, 1114, 1347, 1428
Mox20I TGGCCA 1 cut(s) 427
MroI TCCGGA 1 cut(s) 1429
MscI TGGCCA 1 cut(s) 427
MseI TTAA 8 cut(s) 89, 690, 725, 885, 984, 1248, 1338, 1346
Msp20I TGGCCA 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 743
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 3 cut(s) 215, 1281, 1430
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 3 cut(s) 498, 1017, 1098
MwoI GCNNNNNNNGC 1 cut(s) 1380
NciI CCSGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 631
NlaIII CATG 3 cut(s) 138, 544, 677
NlaIV GGNNCC 5 cut(s) 199, 483, 607, 627, 1428
NmuCI GTSAC 3 cut(s) 561, 1124, 1232
PfeI GAWTC 3 cut(s) 119, 139, 1294
PflFI GACNNNGTC 1 cut(s) 443
PflMI CCANNNNNTGG 2 cut(s) 476, 1229
PinAI ACCGGT 1 cut(s) 1280
PleI GAGTC 2 cut(s) 688, 741
PpsI GAGTC 2 cut(s) 688, 741
PpuMI RGGWCCY 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 1124
PspFI CCCAGC 2 cut(s) 739, 845
PspN4I GGNNCC 5 cut(s) 199, 483, 607, 627, 1428
PspPI GGNCC 2 cut(s) 4, 198
PspPPI RGGWCCY 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 1297
PsuI RGATCY 5 cut(s) 385, 605, 625, 1243, 1453
PsyI GACNNNGTC 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 2 cut(s) 311, 379
RsaNI GTAC 2 cut(s) 310, 378
SacI GAGCTC 1 cut(s) 301
SaqAI TTAA 8 cut(s) 89, 690, 725, 885, 984, 1248, 1338, 1346
Sau96I GGNCC 2 cut(s) 4, 198
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 2 cut(s) 688, 742
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 301, 940
SfaNI GCATC 3 cut(s) 637, 772, 999
SfcI CTRYAG 2 cut(s) 381, 1289
SinI GGWCC 2 cut(s) 4, 198
SmlI CTYRAG 5 cut(s) 82, 610, 983, 1207, 1316
SmoI CTYRAG 5 cut(s) 82, 610, 983, 1207, 1316
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 4 cut(s) 40, 404, 520, 813
TaaI ACNGT 5 cut(s) 251, 445, 916, 1069, 1095
TaiI ACGT 1 cut(s) 1315
TaqI TCGA 3 cut(s) 580, 873, 905
TatI WGTACW 2 cut(s) 309, 377
TfiI GAWTC 3 cut(s) 119, 139, 1294
Tru1I TTAA 8 cut(s) 89, 690, 725, 885, 984, 1248, 1338, 1346
Tru9I TTAA 8 cut(s) 89, 690, 725, 885, 984, 1248, 1338, 1346
TscAI CASTG 4 cut(s) 169, 270, 570, 1260
TseFI GTSAC 3 cut(s) 561, 1124, 1232
Tsp45I GTSAC 3 cut(s) 561, 1124, 1232
TspDTI ATGAA 5 cut(s) 145, 165, 662, 858, 1044
TspGWI ACGGA 2 cut(s) 609, 790
TspRI CASTG 4 cut(s) 169, 270, 570, 1260
Tth111I GACNNNGTC 1 cut(s) 443
Van91I CCANNNNNTGG 2 cut(s) 476, 1229
Vha464I CTTAAG 1 cut(s) 983
VneI GTGCAC 1 cut(s) 936
VpaK11BI GGWCC 2 cut(s) 4, 198
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 3 cut(s) 152, 1032, 1389
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XspI CTAG 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.