Rorug06G0261100

N-glycosylase DNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015250
Physical Location & Seq
Forward (+)
40767362 .. 40768438
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0261100.1

Sequence Viewer

Length: 570 bp
ATGGATGAATCTGACGAGTACCCAAAAGAGCATTACGGCGGCCAAACATCCATGTCGTCCTCATCAACCACAAGCGTCCACGTCACCGCCCTGGACGGCCTGGTCAACGTCAACTCCCTCTTCACCATCGCAGTCTTCGTGGGCCTGTCCCTGACCGTACCGGGACAAAAGAGCCTCGAGAACCGGACAGCCTGCGACGCCGGCACTGACGTGGCGAAGAAGCTTCTGGTGTTCGAGGTTGTGTCCTTCAGCTTCTTCCTCTTCTCGTCTCTGGTCGCCCAGGGCCTCAAGCTCGCCATCAACTTGCTTAACAGCAAGGAAGTCGACGAGGCCTTCCGGGCCCACATCAACCTCAAGGTGCTGAGGTTCGGGATGTTGGGGTCGGCCTTCGGATCCGTCATGGGTTGCATCTTTCTCATGTTGTCGATGGTCAATGTGATCCAGATCCGGTTGGGGATGTTGTCGTGTGGGAGCAAATCTACCGTCCACTCTGTTGCGGCTCTTATCGTTTTAGTCTCTACGGCGCTCTTGGTCTATCTCTCTACTGCTATCTATGCTTTTCTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000702 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006282 GO:0006284 GO:0006285 GO:0006289 GO:0006304 GO:0006355 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0008534 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0016363 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0032356 GO:0032357 GO:0032991 GO:0033554 GO:0033683 GO:0034399 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045007 GO:0045008 GO:0045738 GO:0045934 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051716 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901291 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1903506 GO:2000112 GO:2000779 GO:2000780 GO:2001020 GO:2001021 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD OGG_N

Protein Analysis

189

Amino Acids

20.25

Weight (kDa)

6.5

Isoelectric Point (pI)

25.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015250)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21710
fragaria_vesca FvH4_2g27490
prunus_persica Prupe.1G492700_v2.0.a1
pyrus_communis pycom15g30910
rosa_chinensis RchiOBHm_Chr6g0296321
rosa_laevigata RLG00000011706
rosa_multiflora Rmu_co8447813.1_g000001 Rmu_sc0001478.1_g000002
rosa_roxburghii Rroxscaffold_7G00171630 Rroxscaffold_7G00178450
rosa_rugosa Rorug06G0261100
rosa_samantha Rh6AG372800 Rh6BG380900 Rh6CG386100 Rh6DG373600
rosa_wichuraiana Rw6G032500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 324
AciI CCGC 3 cut(s) 39, 87, 497
AclWI GGATC 4 cut(s) 387, 400, 433, 439
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 20, 159
AjiI CACGTC 2 cut(s) 82, 211
AjnI CCWGG 3 cut(s) 90, 99, 279
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 3 cut(s) 223, 252, 292
AluI AGCT 3 cut(s) 223, 252, 292
Alw26I GTCTC 2 cut(s) 273, 520
AlwI GGATC 4 cut(s) 387, 400, 433, 439
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 7 cut(s) 40, 97, 142, 283, 330, 339, 384
ApaI GGGCCC 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 4 cut(s) 142, 283, 339, 340
AsuC2I CCSGG 2 cut(s) 162, 338
AsuHPI GGTGA 2 cut(s) 76, 115
AvaI CYCGRG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 134, 305, 421
BceAI ACGGC 3 cut(s) 52, 112, 537
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 3 cut(s) 92, 101, 281
BcnI CCSGG 2 cut(s) 162, 338
BcoDI GTCTC 2 cut(s) 273, 520
BfaI CTAG 1 cut(s) 568
BfoI RGCGCY 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 2 cut(s) 40, 498
BlsI GCNGC 2 cut(s) 41, 499
Bme1390I CCNGG 5 cut(s) 92, 101, 162, 281, 338
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 2 cut(s) 82, 211
BmgT120I GGNCC 4 cut(s) 142, 283, 339, 340
BmiI GGNNCC 2 cut(s) 341, 394
BmrFI CCNGG 5 cut(s) 92, 101, 162, 281, 338
BmsI GCATC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 2 cut(s) 272, 338
BpuMI CCSGG 2 cut(s) 162, 338
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 90, 279, 280
BsaWI WCCGGW 2 cut(s) 183, 447
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 3 cut(s) 92, 101, 281
BseDI CCNNGG 3 cut(s) 90, 279, 280
BseGI GGATG 4 cut(s) 10, 47, 378, 462
BseJI GATNNNNATC 1 cut(s) 443
BseMII CTCAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 343
BshFI GGCC 7 cut(s) 42, 99, 144, 285, 332, 341, 386
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 5 cut(s) 161, 184, 201, 337, 448
BslFI GGGAC 2 cut(s) 133, 177
BsmAI GTCTC 2 cut(s) 273, 520
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 133, 177
BsnI GGCC 7 cut(s) 42, 99, 144, 285, 332, 341, 386
BsoBI CYCGRG 1 cut(s) 176
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 3 cut(s) 392, 438, 444
BspACI CCGC 3 cut(s) 39, 87, 497
BspANI GGCC 7 cut(s) 42, 99, 144, 285, 332, 341, 386
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 341, 394
BspPI GGATC 4 cut(s) 387, 400, 433, 439
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 90, 279, 280
BssMI GATC 3 cut(s) 392, 438, 444
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 92, 101, 281
Bst4CI ACNGT 2 cut(s) 157, 484
Bst6I CTCTTC 2 cut(s) 125, 266
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 193, 202, 294
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 4 cut(s) 10, 47, 378, 462
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 3 cut(s) 395, 441, 447
BstMAI GTCTC 2 cut(s) 273, 520
BstMBI GATC 3 cut(s) 392, 438, 444
BstMWI GCNNNNNNNGC 4 cut(s) 197, 201, 338, 554
BstNI CCWGG 3 cut(s) 92, 101, 281
BstSCI CCNGG 5 cut(s) 90, 99, 160, 279, 336
BstSLI GKGCMC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 392, 444
BstYI RGATCY 2 cut(s) 392, 444
BsuRI GGCC 7 cut(s) 42, 99, 144, 285, 332, 341, 386
BtgZI GCGATG 1 cut(s) 112
BtrI CACGTC 2 cut(s) 82, 211
BtsCI GGATG 4 cut(s) 10, 47, 378, 462
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 193, 202, 294
CfoI GCGC 1 cut(s) 526
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 4 cut(s) 142, 283, 339, 340
CseI GACGC 2 cut(s) 64, 206
Csp6I GTAC 2 cut(s) 19, 158
CviAII CATG 3 cut(s) 52, 400, 418
CviQI GTAC 2 cut(s) 19, 158
DdeI CTNAG 1 cut(s) 362
DpnI GATC 3 cut(s) 394, 440, 446
DpnII GATC 3 cut(s) 392, 438, 444
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 125, 266
EarI CTCTTC 2 cut(s) 125, 266
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 90, 99, 279
EcoT38I GRGCYC 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 3 cut(s) 55, 403, 421
FaiI YATR 4 cut(s) 53, 401, 419, 555
FaqI GGGAC 2 cut(s) 133, 177
FatI CATG 3 cut(s) 51, 399, 417
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 40, 498
FokI GGATG 4 cut(s) 17, 34, 385, 469
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 40, 498
FspBI CTAG 1 cut(s) 568
GlaI GCGC 1 cut(s) 525
GluI GCNGC 2 cut(s) 40, 498
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 7 cut(s) 42, 99, 144, 285, 332, 341, 386
HapII CCGG 5 cut(s) 161, 184, 201, 337, 448
HgaI GACGC 2 cut(s) 64, 206
HhaI GCGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 55, 403, 421
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 3 cut(s) 106, 112, 325
HindII GTYRAC 3 cut(s) 106, 112, 325
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 8
HpaII CCGG 5 cut(s) 161, 184, 201, 337, 448
HphI GGTGA 2 cut(s) 76, 115
Hpy166II GTNNAC 5 cut(s) 79, 106, 112, 325, 487
Hpy188I TCNGA 2 cut(s) 13, 392
Hpy188III TCNNGA 3 cut(s) 178, 370, 442
Hpy8I GTNNAC 5 cut(s) 79, 106, 112, 325, 487
Hpy99I CGWCG 2 cut(s) 200, 329
HpyAV CCTTC 3 cut(s) 256, 343, 397
HpyCH4III ACNGT 2 cut(s) 157, 484
HpyCH4IV ACGT 3 cut(s) 81, 108, 210
HpyCH4V TGCA 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 201, 338, 554
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 3 cut(s) 81, 108, 210
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 55, 403, 421
HspAI GCGC 1 cut(s) 524
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 392, 438, 444
LmnI GCTCC 1 cut(s) 471
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 568
MaeII ACGT 3 cut(s) 81, 108, 210
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 394, 440, 446
MboI GATC 3 cut(s) 392, 438, 444
MboII GAAGA 6 cut(s) 112, 127, 229, 247, 253, 554
MflI RGATCY 2 cut(s) 392, 444
MhlI GDGCHC 1 cut(s) 343
MnlI CCTC 9 cut(s) 70, 128, 185, 229, 269, 296, 322, 357, 362
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 5 cut(s) 161, 184, 201, 337, 448
MspR9I CCNGG 5 cut(s) 92, 101, 162, 281, 338
MvaI CCWGG 3 cut(s) 92, 101, 281
MwoI GCNNNNNNNGC 4 cut(s) 197, 201, 338, 554
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 162, 338
NdeII GATC 3 cut(s) 392, 438, 444
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 55, 403, 421
NlaIV GGNNCC 2 cut(s) 341, 394
NmuCI GTSAC 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 176
PasI CCCWGGG 1 cut(s) 280
PceI AGGCCT 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 41, 499
Psp6I CCWGG 3 cut(s) 90, 99, 279
PspGI CCWGG 3 cut(s) 90, 99, 279
PspN4I GGNNCC 2 cut(s) 341, 394
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 4 cut(s) 142, 283, 339, 340
PsuI RGATCY 2 cut(s) 392, 444
RsaI GTAC 2 cut(s) 20, 159
RsaNI GTAC 2 cut(s) 19, 158
RseI CAYNNNNRTG 1 cut(s) 209
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 40, 498
Sau3AI GATC 3 cut(s) 392, 438, 444
Sau96I GGNCC 4 cut(s) 142, 283, 339, 340
ScrFI CCNGG 5 cut(s) 92, 101, 162, 281, 338
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 1 cut(s) 417
SfiI GGCCNNNNNGGCC 1 cut(s) 338
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 3 cut(s) 176, 287, 353
SmoI CTYRAG 3 cut(s) 176, 287, 353
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 3 cut(s) 39, 87, 497
SspMI CTAG 1 cut(s) 568
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 5 cut(s) 90, 99, 160, 279, 336
TaaI ACNGT 2 cut(s) 157, 484
TaiI ACGT 3 cut(s) 84, 111, 213
TaqI TCGA 4 cut(s) 177, 234, 324, 425
TauI GCSGC 2 cut(s) 42, 500
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.