Rh6BG380900

N-glycosylase DNA

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
60895106 .. 60897317
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG380900.1

Sequence Viewer

Length: 924 bp
ATGCTCTCACTGAAACTGAGACCTCTCTCAACCATGAAGAAGAGACAAATCCCAATCCAATCGCCTCCATCCACCCCTCCAACCCCACAAACCCTTTTAAGCTCCAAATCCAAAAGACCCAAAACCCTAAACCTCAAATCCCCCAAATGGGTCCCACTCAACCTCACCCAGTCCGAGCTCTCCCTGCCCCTCACTTTCCCCACCGGCCAAACCTTCCGGTGGAGACAAACCGGCCCTCTTCAGTACACCGGCGTTGTTGGGTCCCATCTAGTCTCCCTCCAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTTCACCAATCCGCCACTTCCCAGTCCCATGCCGAGTCGGCTCTGCTCGATTTTCTCAACATGGGTATTTCCCTGTCCGGAATTTGGGAGGTTTTCTCGGCTTCCGATTCCAGGTTTGCCGAGCTCGCCACCCATTTGGGCGGCGCTAGAGTTCTCAGGCAAGACCCACTTGAGTGTTTGATTCAGTTTCTGTGTTCTTCAAATAACAACATTCAGAGAATTACCAAAATGGTGGACTTTGTGTCTTCATTGGGGACCCATTTGGGGTCTGTTGCAGGTTTTGAGTTCCATGAATTTCCATCCTTGGATCGCTTGTCAATGGTGTCAGAACAAGAGCTCAGAGAGGCCGGTTTCGGTTATAGGGCTAAGTACTTAACTGGAACTGTGAAGGCATTGCAGTCGAAACCTGGGGGAGGTGAAGAGTGGCTTTTGTCTCTTCGGAAACTTGAACTCGAAGAGGTGATTGATGCTCTTACCACATTGCCTGGAGTTGGTCCCAAGGTGGCAGCATGTATAGCTCTTTTTTCGCTTGATCAACACAATGCCATTCCTGTTGATACACACGTGTGGAAGGTAGTGCTTTTAAAACTTGAACTTTTAACACTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000702 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006282 GO:0006284 GO:0006285 GO:0006289 GO:0006304 GO:0006355 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0008534 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0016363 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0032356 GO:0032357 GO:0032991 GO:0033554 GO:0033683 GO:0034399 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045007 GO:0045008 GO:0045738 GO:0045934 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051716 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901291 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1903506 GO:2000112 GO:2000779 GO:2000780 GO:2001020 GO:2001021 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

33.84

Weight (kDa)

8.86

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OGG_N PF07934 53 - 164 2.2e-24 8-oxoguanine DNA glycosylase, N-terminal domain
HhH-GPD PF00730 166 - 297 1.1e-07 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015250)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 2 cut(s) 324, 453
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 2 cut(s) 393, 605
AcuI CTGAAG 1 cut(s) 224
AcvI CACGTG 1 cut(s) 877
AfaI GTAC 2 cut(s) 245, 683
AfiI CCNNNNNNNGG 8 cut(s) 147, 148, 219, 396, 423, 576, 725, 803
AflIII ACRYGT 2 cut(s) 874, 876
AgsI TTSAA 3 cut(s) 513, 761, 905
AhdI GACNNNNNGTC 1 cut(s) 553
AjnI CCWGG 3 cut(s) 422, 718, 796
AleI CACNNNNGTG 2 cut(s) 484, 877
AluBI AGCT 5 cut(s) 102, 178, 436, 649, 830
AluI AGCT 5 cut(s) 102, 178, 436, 649, 830
Alw21I GWGCWC 3 cut(s) 180, 438, 651
Alw26I GTCTC 5 cut(s) 13, 37, 217, 277, 750
AlwI GGATC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 502
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 3 cut(s) 205, 232, 657
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 2 cut(s) 393, 605
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 5 cut(s) 151, 233, 261, 567, 806
AsuHPI GGTGA 4 cut(s) 157, 308, 740, 784
AvaII GGWCC 4 cut(s) 151, 261, 567, 806
BaeI ACNNNNGTAYC 2 cut(s) 861, 894
BanII GRGCYC 3 cut(s) 180, 438, 651
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 3 cut(s) 180, 438, 651
BbvI GCAGC 1 cut(s) 830
BccI CCATC 3 cut(s) 76, 273, 619
BceAI ACGGC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 3 cut(s) 424, 720, 798
BclI TGATCA 1 cut(s) 844
BcoDI GTCTC 5 cut(s) 13, 37, 217, 277, 750
BfaI CTAG 2 cut(s) 269, 459
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 578
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 2 cut(s) 454, 819
BlsI GCNGC 2 cut(s) 455, 820
BmcAI AGTACT 1 cut(s) 683
Bme1390I CCNGG 3 cut(s) 424, 720, 798
Bme18I GGWCC 4 cut(s) 151, 261, 567, 806
BmeRI GACNNNNNGTC 1 cut(s) 553
BmgT120I GGNCC 5 cut(s) 151, 233, 261, 567, 806
BmiI GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
BmrFI CCNGG 3 cut(s) 424, 720, 798
BmrI ACTGGG 2 cut(s) 163, 328
BmsI GCATC 1 cut(s) 769
BmuI ACTGGG 2 cut(s) 163, 328
BpiI GAAGAC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 2 cut(s) 263, 819
BpuEI CTTGAG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 877
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 3 cut(s) 615, 719, 810
BsaWI WCCGGW 2 cut(s) 216, 389
Bsc4I CCNNNNNNNGG 8 cut(s) 147, 148, 219, 396, 423, 576, 725, 803
Bse118I RCCGGY 4 cut(s) 203, 230, 248, 659
Bse1I ACTGG 3 cut(s) 169, 334, 694
Bse3DI GCAATG 2 cut(s) 704, 791
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 3 cut(s) 424, 720, 798
BseDI CCNNGG 3 cut(s) 615, 719, 810
BseGI GGATG 2 cut(s) 68, 611
BseLI CCNNNNNNNGG 8 cut(s) 147, 148, 219, 396, 423, 576, 725, 803
BseMI GCAATG 2 cut(s) 704, 791
BseMII CTCAG 3 cut(s) 8, 481, 664
BseNI ACTGG 3 cut(s) 169, 334, 694
BseXI GCAGC 1 cut(s) 830
BshFI GGCC 3 cut(s) 207, 234, 659
BsiHKAI GWGCWC 3 cut(s) 180, 438, 651
BsiSI CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
BslFI GGGAC 5 cut(s) 137, 247, 322, 580, 792
BslI CCNNNNNNNGG 8 cut(s) 147, 148, 219, 396, 423, 576, 725, 803
BsmAI GTCTC 5 cut(s) 13, 37, 217, 277, 750
BsmFI GGGAC 5 cut(s) 137, 247, 322, 580, 792
BsnI GGCC 3 cut(s) 207, 234, 659
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 3 cut(s) 180, 438, 651
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 2 cut(s) 619, 844
BspACI CCGC 2 cut(s) 324, 453
BspANI GGCC 3 cut(s) 207, 234, 659
BspCNI CTCAG 3 cut(s) 9, 480, 663
BspEI TCCGGA 1 cut(s) 389
BspLI GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 704, 791
BsrFI RCCGGY 4 cut(s) 203, 230, 248, 659
BsrI ACTGG 3 cut(s) 169, 334, 694
BssAI RCCGGY 4 cut(s) 203, 230, 248, 659
BssECI CCNNGG 3 cut(s) 615, 719, 810
BssMI GATC 2 cut(s) 619, 844
BssT1I CCWWGG 2 cut(s) 615, 810
Bst2UI CCWGG 3 cut(s) 424, 720, 798
Bst4CI ACNGT 1 cut(s) 697
Bst6I CTCTTC 5 cut(s) 35, 243, 726, 753, 762
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 4 cut(s) 17, 467, 650, 678
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 2 cut(s) 68, 611
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 2 cut(s) 622, 847
BstMAI GTCTC 5 cut(s) 13, 37, 217, 277, 750
BstMBI GATC 2 cut(s) 619, 844
BstMWI GCNNNNNNNGC 4 cut(s) 184, 350, 437, 827
BstNI CCWGG 3 cut(s) 424, 720, 798
BstNSI RCATGY 1 cut(s) 825
BstSCI CCNGG 3 cut(s) 422, 718, 796
BstV1I GCAGC 1 cut(s) 830
BstV2I GAAGAC 1 cut(s) 549
BstXI CCANNNNNNTGG 2 cut(s) 448, 544
BsuRI GGCC 3 cut(s) 207, 234, 659
BtsCI GGATG 2 cut(s) 68, 611
BtsIMutI CAGTG 1 cut(s) 8
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 502
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 4 cut(s) 203, 230, 248, 659
Cfr13I GGNCC 5 cut(s) 151, 233, 261, 567, 806
Csp6I GTAC 2 cut(s) 244, 682
CviAII CATG 6 cut(s) 34, 341, 373, 602, 822, 921
CviQI GTAC 2 cut(s) 244, 682
DdeI CTNAG 4 cut(s) 17, 467, 650, 678
DpnI GATC 2 cut(s) 621, 846
DpnII GATC 2 cut(s) 619, 844
DraI TTTAAA 1 cut(s) 897
DriI GACNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 5 cut(s) 35, 243, 726, 753, 762
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 5 cut(s) 35, 243, 726, 753, 762
EciI GGCGGA 1 cut(s) 313
Ecl136II GAGCTC 3 cut(s) 178, 436, 649
Eco130I CCWWGG 2 cut(s) 615, 810
Eco24I GRGCYC 3 cut(s) 180, 438, 651
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 4 cut(s) 151, 261, 567, 806
Eco53kI GAGCTC 3 cut(s) 178, 436, 649
Eco57I CTGAAG 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 877
EcoICRI GAGCTC 3 cut(s) 178, 436, 649
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 3 cut(s) 151, 261, 567
EcoRII CCWGG 3 cut(s) 422, 718, 796
EcoT14I CCWWGG 2 cut(s) 615, 810
EcoT38I GRGCYC 3 cut(s) 180, 438, 651
ErhI CCWWGG 2 cut(s) 615, 810
FaeI CATG 6 cut(s) 37, 344, 376, 605, 825, 924
FaiI YATR 8 cut(s) 35, 342, 374, 603, 672, 823, 827, 922
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 723, 755
FaqI GGGAC 5 cut(s) 137, 247, 322, 580, 792
FatI CATG 6 cut(s) 33, 340, 372, 601, 821, 920
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 2 cut(s) 454, 819
FokI GGATG 2 cut(s) 55, 598
FriOI GRGCYC 3 cut(s) 180, 438, 651
Fsp4HI GCNGC 2 cut(s) 454, 819
FspBI CTAG 2 cut(s) 269, 459
GlaI GCGC 1 cut(s) 457
GluI GCNGC 2 cut(s) 454, 819
GsuI CTGGAG 2 cut(s) 263, 819
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 3 cut(s) 207, 234, 659
HapII CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
HhaI GCGC 1 cut(s) 458
Hin1II CATG 6 cut(s) 37, 344, 376, 605, 825, 924
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 3 cut(s) 347, 419, 493
HpaII CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
HphI GGTGA 4 cut(s) 157, 308, 740, 784
Hpy166II GTNNAC 2 cut(s) 246, 547
Hpy188I TCNGA 6 cut(s) 175, 418, 528, 640, 653, 753
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 2 cut(s) 246, 547
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 4 cut(s) 223, 323, 694, 877
HpyCH4III ACNGT 1 cut(s) 697
HpyCH4IV ACGT 2 cut(s) 300, 876
HpyCH4V TGCA 2 cut(s) 587, 709
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 350, 437, 827
HpyF3I CTNAG 4 cut(s) 17, 467, 650, 678
HpySE526I ACGT 2 cut(s) 300, 876
Hsp92II CATG 6 cut(s) 37, 344, 376, 605, 825, 924
HspAI GCGC 1 cut(s) 456
KflI GGGWCCC 3 cut(s) 151, 261, 567
Kpn2I TCCGGA 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 2 cut(s) 619, 844
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 1 cut(s) 830
LweI GCATC 1 cut(s) 769
MaeI CTAG 2 cut(s) 269, 459
MaeII ACGT 2 cut(s) 300, 876
MalI GATC 2 cut(s) 621, 846
MboI GATC 2 cut(s) 619, 844
MboII GAAGA 8 cut(s) 49, 52, 230, 501, 549, 740, 743, 779
MhlI GDGCHC 3 cut(s) 180, 438, 651
MluCI AATT 3 cut(s) 393, 531, 605
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 104
MroI TCCGGA 1 cut(s) 389
MseI TTAA 4 cut(s) 98, 686, 896, 911
MslI CAYNNNNRTG 3 cut(s) 484, 877, 919
MspI CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
MspR9I CCNGG 3 cut(s) 424, 720, 798
MvaI CCWGG 3 cut(s) 424, 720, 798
MwoI GCNNNNNNNGC 4 cut(s) 184, 350, 437, 827
NdeII GATC 2 cut(s) 619, 844
NlaIII CATG 6 cut(s) 37, 344, 376, 605, 825, 924
NlaIV GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
NmeAIII GCCGAG 3 cut(s) 370, 389, 457
NspI RCATGY 1 cut(s) 825
OliI CACNNNNGTG 2 cut(s) 484, 877
PfeI GAWTC 2 cut(s) 419, 493
PkrI GCNGC 2 cut(s) 455, 820
PleI GAGTC 1 cut(s) 355
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 877
PpuMI RGGWCCY 3 cut(s) 151, 261, 567
Psp124BI GAGCTC 3 cut(s) 180, 438, 651
Psp5II RGGWCCY 3 cut(s) 151, 261, 567
Psp6I CCWGG 3 cut(s) 422, 718, 796
PspCI CACGTG 1 cut(s) 877
PspGI CCWGG 3 cut(s) 422, 718, 796
PspN4I GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
PspPI GGNCC 5 cut(s) 151, 233, 261, 567, 806
PspPPI RGGWCCY 3 cut(s) 151, 261, 567
PstNI CAGNNNCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 245, 683
RsaNI GTAC 2 cut(s) 244, 682
RseI CAYNNNNRTG 3 cut(s) 484, 877, 919
SacI GAGCTC 3 cut(s) 180, 438, 651
SaqAI TTAA 4 cut(s) 98, 686, 896, 911
SatI GCNGC 2 cut(s) 454, 819
Sau3AI GATC 2 cut(s) 619, 844
Sau96I GGNCC 5 cut(s) 151, 233, 261, 567, 806
ScaI AGTACT 1 cut(s) 683
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 3 cut(s) 424, 720, 798
SduI GDGCHC 3 cut(s) 180, 438, 651
SfaNI GCATC 1 cut(s) 769
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 4 cut(s) 151, 261, 567, 806
SmiMI CAYNNNNRTG 3 cut(s) 484, 877, 919
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 393, 531, 605
SsiI CCGC 2 cut(s) 324, 453
SspMI CTAG 2 cut(s) 269, 459
SstI GAGCTC 3 cut(s) 180, 438, 651
StyD4I CCNGG 3 cut(s) 422, 718, 796
StyI CCWWGG 2 cut(s) 615, 810
TaaI ACNGT 1 cut(s) 697
TaiI ACGT 2 cut(s) 303, 879
TaqI TCGA 3 cut(s) 360, 713, 765
TasI AATT 3 cut(s) 393, 531, 605
TatI WGTACW 2 cut(s) 243, 681
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 2 cut(s) 419, 493
Tru1I TTAA 4 cut(s) 98, 686, 896, 911
Tru9I TTAA 4 cut(s) 98, 686, 896, 911
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 818
TspDTI ATGAA 3 cut(s) 50, 549, 618
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 4 cut(s) 151, 261, 567, 806
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 2 cut(s) 393, 605
XceI RCATGY 1 cut(s) 825
XspI CTAG 2 cut(s) 269, 459
ZrmI AGTACT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.