Rh6DG373600

N-glycosylase DNA

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
56848754 .. 56850987
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG373600.1

Sequence Viewer

Length: 954 bp
ATGCTCTCACTGAAACTGAGACCTCTCTCAACCATGAAGAAGAGACAAATCCCAATCCAATCGCCTCCATCCACCCCTCCAACCCCACAAACCCTAAGCTCCAAATCCAAAAGACCCAAAACCCTCAACCTCAAATCCCTCAAATGGGTCCCACTCAACCTCACCCAGTCCGAGCTCTCCCTGCCCCTCACTTTCCCCACCGGCCAAACCTTCCGGTGGAGACAAACCGGCCCTCTTCAGTACACCGGCGTTGTTGAGTCCCACCTAGTCTCCCTCCAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTTCACCAATCCGCCACTTCCGAGTCCCATGCCGAGTCGGCTCTGCTCGATTTTCTCAACATGGGTATTTCCCTGGCCGGAATTTGGGAGGTTTTCTCGGCTTCCGATTCCAGGTTTGCCGAGCTCGCCACCCATTTGGGCGGCGCTAGAGTTCTCAGGCAAGACCCACTTGAGTGTTTGATTCAGTTCCTGTGTTCTTCAAATAACAACATTCAGAGAATTACCAAAATGGTGGACTTTGTGTCTTCATTGGGGACCCATTTGGGGTCTGTTGCAGGTTTTGAGTTCCATGAATTTCCATCCTTGGATCGCTTGGCAATGGTGTCGGAACAAGAGCTCAGAGAGGCCGGTTTCGGTTATAGGGCTAAGTACTTAACTGGCACTGTGAAGGCATTGCAGTCGAAACCTGGGGGAGGTGAAGAGTGGCTTTTGTCTCTTCGGAAACTTGAACTCGAAGAGGTGATTGATGCTCTTACCACATTGCCTGGAGTTGGTCCCAAGGTGGCAGCATGTATAGCTCTTTTTTCGCTTGATCAACACAATGCCATTCCTGTTGATACACACGTGTGGAAGGTAGTGCTTTTAAAACTTGAACCTTTAACACTAACATGGTATGTTGCTTTCTGTGATGATGATGTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000702 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006282 GO:0006284 GO:0006285 GO:0006289 GO:0006304 GO:0006355 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0008534 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0016363 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0032356 GO:0032357 GO:0032991 GO:0033554 GO:0033683 GO:0034399 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045007 GO:0045008 GO:0045738 GO:0045934 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051716 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901291 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1903506 GO:2000112 GO:2000779 GO:2000780 GO:2001020 GO:2001021 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

35.11

Weight (kDa)

6.51

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OGG_N PF07934 52 - 163 2.9e-24 8-oxoguanine DNA glycosylase, N-terminal domain
HhH-GPD PF00730 165 - 296 2.8e-08 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015250)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 575
AciI CCGC 2 cut(s) 321, 450
AclWI GGATC 1 cut(s) 624
AcoI YGGCCR 2 cut(s) 202, 384
AcsI RAATTY 2 cut(s) 390, 602
AcuI CTGAAG 1 cut(s) 221
AcvI CACGTG 1 cut(s) 874
AfaI GTAC 2 cut(s) 242, 680
AfiI CCNNNNNNNGG 8 cut(s) 144, 145, 216, 393, 420, 573, 722, 800
AflIII ACRYGT 2 cut(s) 871, 873
AgsI TTSAA 3 cut(s) 510, 758, 902
AhdI GACNNNNNGTC 1 cut(s) 550
AjnI CCWGG 4 cut(s) 381, 419, 715, 793
AleI CACNNNNGTG 2 cut(s) 481, 874
AluBI AGCT 5 cut(s) 99, 175, 433, 646, 827
AluI AGCT 5 cut(s) 99, 175, 433, 646, 827
Alw21I GWGCWC 3 cut(s) 177, 435, 648
Alw26I GTCTC 5 cut(s) 13, 37, 214, 274, 747
AlwI GGATC 1 cut(s) 624
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 4 cut(s) 202, 229, 384, 654
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 2 cut(s) 390, 602
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 4 cut(s) 148, 230, 564, 803
AsuHPI GGTGA 4 cut(s) 154, 305, 737, 781
AvaII GGWCC 3 cut(s) 148, 564, 803
BaeI ACNNNNGTAYC 2 cut(s) 858, 891
BanII GRGCYC 3 cut(s) 177, 435, 648
BbrPI CACGTG 1 cut(s) 874
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 3 cut(s) 177, 435, 648
BbvI GCAGC 1 cut(s) 827
BccI CCATC 2 cut(s) 76, 616
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 6 cut(s) 320, 354, 615, 649, 690, 724
BciT130I CCWGG 4 cut(s) 383, 421, 717, 795
BclI TGATCA 1 cut(s) 841
BcoDI GTCTC 5 cut(s) 13, 37, 214, 274, 747
BfaI CTAG 2 cut(s) 266, 456
BfoI RGCGCY 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 2 cut(s) 451, 816
BlsI GCNGC 2 cut(s) 452, 817
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 4 cut(s) 383, 421, 717, 795
Bme18I GGWCC 3 cut(s) 148, 564, 803
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgT120I GGNCC 4 cut(s) 148, 230, 564, 803
BmiI GGNNCC 5 cut(s) 149, 150, 565, 566, 805
BmrFI CCNGG 4 cut(s) 383, 421, 717, 795
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 766
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 2 cut(s) 260, 816
Bpu10I CCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 874
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 381, 612, 716, 807
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 8 cut(s) 144, 145, 216, 393, 420, 573, 722, 800
Bse118I RCCGGY 4 cut(s) 200, 227, 245, 656
Bse1I ACTGG 2 cut(s) 166, 691
Bse3DI GCAATG 3 cut(s) 633, 701, 788
BseBI CCWGG 4 cut(s) 383, 421, 717, 795
BseDI CCNNGG 4 cut(s) 381, 612, 716, 807
BseGI GGATG 2 cut(s) 68, 608
BseLI CCNNNNNNNGG 8 cut(s) 144, 145, 216, 393, 420, 573, 722, 800
BseMI GCAATG 3 cut(s) 633, 701, 788
BseMII CTCAG 3 cut(s) 8, 478, 661
BseNI ACTGG 2 cut(s) 166, 691
BseXI GCAGC 1 cut(s) 827
BshFI GGCC 4 cut(s) 204, 231, 386, 656
BsiHKAI GWGCWC 3 cut(s) 177, 435, 648
BsiSI CCGG 6 cut(s) 201, 214, 228, 246, 387, 657
BslFI GGGAC 5 cut(s) 134, 244, 319, 577, 789
BslI CCNNNNNNNGG 8 cut(s) 144, 145, 216, 393, 420, 573, 722, 800
BsmAI GTCTC 5 cut(s) 13, 37, 214, 274, 747
BsmFI GGGAC 5 cut(s) 134, 244, 319, 577, 789
BsnI GGCC 4 cut(s) 204, 231, 386, 656
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 3 cut(s) 177, 435, 648
Bsp143I GATC 2 cut(s) 616, 841
BspACI CCGC 2 cut(s) 321, 450
BspANI GGCC 4 cut(s) 204, 231, 386, 656
BspCNI CTCAG 3 cut(s) 9, 477, 660
BspLI GGNNCC 5 cut(s) 149, 150, 565, 566, 805
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 1 cut(s) 624
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 3 cut(s) 633, 701, 788
BsrFI RCCGGY 4 cut(s) 200, 227, 245, 656
BsrI ACTGG 2 cut(s) 166, 691
BssAI RCCGGY 4 cut(s) 200, 227, 245, 656
BssECI CCNNGG 4 cut(s) 381, 612, 716, 807
BssMI GATC 2 cut(s) 616, 841
BssT1I CCWWGG 2 cut(s) 612, 807
Bst2UI CCWGG 4 cut(s) 383, 421, 717, 795
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 5 cut(s) 35, 240, 723, 750, 759
BstBAI YACGTR 1 cut(s) 874
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 5 cut(s) 17, 95, 464, 647, 675
BstENI CCTNNNNNAGG 1 cut(s) 720
BstF5I GGATG 2 cut(s) 68, 608
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 2 cut(s) 619, 844
BstMAI GTCTC 5 cut(s) 13, 37, 214, 274, 747
BstMBI GATC 2 cut(s) 616, 841
BstMWI GCNNNNNNNGC 4 cut(s) 181, 347, 434, 824
BstNI CCWGG 4 cut(s) 383, 421, 717, 795
BstNSI RCATGY 1 cut(s) 822
BstSCI CCNGG 4 cut(s) 381, 419, 715, 793
BstV1I GCAGC 1 cut(s) 827
BstV2I GAAGAC 1 cut(s) 546
BstXI CCANNNNNNTGG 2 cut(s) 445, 541
BsuRI GGCC 4 cut(s) 204, 231, 386, 656
BtsCI GGATG 2 cut(s) 68, 608
BtsIMutI CAGTG 2 cut(s) 8, 690
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 499
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 4 cut(s) 200, 227, 245, 656
Cfr13I GGNCC 4 cut(s) 148, 230, 564, 803
Csp6I GTAC 2 cut(s) 241, 679
CviAII CATG 6 cut(s) 34, 338, 370, 599, 819, 918
CviQI GTAC 2 cut(s) 241, 679
DdeI CTNAG 5 cut(s) 17, 95, 464, 647, 675
DpnI GATC 2 cut(s) 618, 843
DpnII GATC 2 cut(s) 616, 841
DraI TTTAAA 1 cut(s) 894
DriI GACNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 2 cut(s) 202, 384
Eam1104I CTCTTC 5 cut(s) 35, 240, 723, 750, 759
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 5 cut(s) 35, 240, 723, 750, 759
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 3 cut(s) 175, 433, 646
Eco130I CCWWGG 2 cut(s) 612, 807
Eco24I GRGCYC 3 cut(s) 177, 435, 648
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 3 cut(s) 148, 564, 803
Eco53kI GAGCTC 3 cut(s) 175, 433, 646
Eco57I CTGAAG 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 874
EcoICRI GAGCTC 3 cut(s) 175, 433, 646
EcoNI CCTNNNNNAGG 1 cut(s) 720
EcoO109I RGGNCCY 2 cut(s) 148, 564
EcoRII CCWGG 4 cut(s) 381, 419, 715, 793
EcoT14I CCWWGG 2 cut(s) 612, 807
EcoT38I GRGCYC 3 cut(s) 177, 435, 648
ErhI CCWWGG 2 cut(s) 612, 807
FaeI CATG 6 cut(s) 37, 341, 373, 602, 822, 921
FaiI YATR 9 cut(s) 35, 339, 371, 600, 669, 820, 824, 919, 924
FalI AAGNNNNNCTT 4 cut(s) 462, 494, 720, 752
FaqI GGGAC 5 cut(s) 134, 244, 319, 577, 789
FatI CATG 6 cut(s) 33, 337, 369, 598, 818, 917
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 2 cut(s) 451, 816
FokI GGATG 2 cut(s) 55, 595
FriOI GRGCYC 3 cut(s) 177, 435, 648
Fsp4HI GCNGC 2 cut(s) 451, 816
FspBI CTAG 2 cut(s) 266, 456
GlaI GCGC 1 cut(s) 454
GluI GCNGC 2 cut(s) 451, 816
GsuI CTGGAG 2 cut(s) 260, 816
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 4 cut(s) 204, 231, 386, 656
HapII CCGG 6 cut(s) 201, 214, 228, 246, 387, 657
HhaI GCGC 1 cut(s) 455
Hin1II CATG 6 cut(s) 37, 341, 373, 602, 822, 921
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 5 cut(s) 257, 332, 344, 416, 490
HpaII CCGG 6 cut(s) 201, 214, 228, 246, 387, 657
HphI GGTGA 4 cut(s) 154, 305, 737, 781
Hpy166II GTNNAC 2 cut(s) 243, 544
Hpy188I TCNGA 7 cut(s) 172, 331, 415, 525, 637, 650, 750
Hpy8I GTNNAC 2 cut(s) 243, 544
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 4 cut(s) 220, 320, 691, 874
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 2 cut(s) 297, 873
HpyCH4V TGCA 2 cut(s) 584, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 347, 434, 824
HpyF3I CTNAG 5 cut(s) 17, 95, 464, 647, 675
HpySE526I ACGT 2 cut(s) 297, 873
Hsp92II CATG 6 cut(s) 37, 341, 373, 602, 822, 921
HspAI GCGC 1 cut(s) 453
KflI GGGWCCC 2 cut(s) 148, 564
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 2 cut(s) 616, 841
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 827
LweI GCATC 1 cut(s) 766
MaeI CTAG 2 cut(s) 266, 456
MaeII ACGT 2 cut(s) 297, 873
MalI GATC 2 cut(s) 618, 843
MboI GATC 2 cut(s) 616, 841
MboII GAAGA 8 cut(s) 49, 52, 227, 498, 546, 737, 740, 776
MhlI GDGCHC 3 cut(s) 177, 435, 648
MluCI AATT 3 cut(s) 390, 528, 602
MlyI GAGTC 3 cut(s) 266, 341, 353
MmeI TCCRAC 2 cut(s) 104, 615
MseI TTAA 3 cut(s) 683, 893, 908
MslI CAYNNNNRTG 3 cut(s) 481, 874, 916
MspI CCGG 6 cut(s) 201, 214, 228, 246, 387, 657
MspR9I CCNGG 4 cut(s) 383, 421, 717, 795
MvaI CCWGG 4 cut(s) 383, 421, 717, 795
MwoI GCNNNNNNNGC 4 cut(s) 181, 347, 434, 824
NdeII GATC 2 cut(s) 616, 841
NlaIII CATG 6 cut(s) 37, 341, 373, 602, 822, 921
NlaIV GGNNCC 5 cut(s) 149, 150, 565, 566, 805
NmeAIII GCCGAG 3 cut(s) 367, 386, 454
NspI RCATGY 1 cut(s) 822
OliI CACNNNNGTG 2 cut(s) 481, 874
PfeI GAWTC 2 cut(s) 416, 490
PkrI GCNGC 2 cut(s) 452, 817
PleI GAGTC 3 cut(s) 265, 340, 352
PmaCI CACGTG 1 cut(s) 874
PmlI CACGTG 1 cut(s) 874
PpsI GAGTC 3 cut(s) 265, 340, 352
Ppu21I YACGTR 1 cut(s) 874
PpuMI RGGWCCY 2 cut(s) 148, 564
Psp124BI GAGCTC 3 cut(s) 177, 435, 648
Psp5II RGGWCCY 2 cut(s) 148, 564
Psp6I CCWGG 4 cut(s) 381, 419, 715, 793
PspCI CACGTG 1 cut(s) 874
PspGI CCWGG 4 cut(s) 381, 419, 715, 793
PspN4I GGNNCC 5 cut(s) 149, 150, 565, 566, 805
PspPI GGNCC 4 cut(s) 148, 230, 564, 803
PspPPI RGGWCCY 2 cut(s) 148, 564
PstNI CAGNNNCTG 1 cut(s) 499
RsaI GTAC 2 cut(s) 242, 680
RsaNI GTAC 2 cut(s) 241, 679
RseI CAYNNNNRTG 3 cut(s) 481, 874, 916
SacI GAGCTC 3 cut(s) 177, 435, 648
SaqAI TTAA 3 cut(s) 683, 893, 908
SatI GCNGC 2 cut(s) 451, 816
Sau3AI GATC 2 cut(s) 616, 841
Sau96I GGNCC 4 cut(s) 148, 230, 564, 803
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 3 cut(s) 266, 341, 353
ScrFI CCNGG 4 cut(s) 383, 421, 717, 795
SduI GDGCHC 3 cut(s) 177, 435, 648
SfaNI GCATC 1 cut(s) 766
SgrAI CRCCGGYG 1 cut(s) 245
SinI GGWCC 3 cut(s) 148, 564, 803
SmiMI CAYNNNNRTG 3 cut(s) 481, 874, 916
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 3 cut(s) 390, 528, 602
SsiI CCGC 2 cut(s) 321, 450
SspMI CTAG 2 cut(s) 266, 456
SstI GAGCTC 3 cut(s) 177, 435, 648
StyD4I CCNGG 4 cut(s) 381, 419, 715, 793
StyI CCWWGG 2 cut(s) 612, 807
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 2 cut(s) 300, 876
TaqI TCGA 3 cut(s) 357, 710, 762
TasI AATT 3 cut(s) 390, 528, 602
TatI WGTACW 2 cut(s) 240, 678
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 2 cut(s) 416, 490
Tru1I TTAA 3 cut(s) 683, 893, 908
Tru9I TTAA 3 cut(s) 683, 893, 908
TscAI CASTG 2 cut(s) 15, 697
TseI GCWGC 1 cut(s) 815
TspDTI ATGAA 3 cut(s) 50, 546, 615
TspRI CASTG 2 cut(s) 15, 697
VpaK11BI GGWCC 3 cut(s) 148, 564, 803
XagI CCTNNNNNAGG 1 cut(s) 720
XapI RAATTY 2 cut(s) 390, 602
XceI RCATGY 1 cut(s) 822
XspI CTAG 2 cut(s) 266, 456
ZrmI AGTACT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.