Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007051

Physical Location & Seq

Genomic Coordinates Reverse (-)

45734828 .. 45735469

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAAGGAGACTCAAGTAGAGGCAGCAAGGCAAAACAAGAGGGACAGAAATATGTCAAGTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAGTTCGCAGCAGAAATACGCGATTCAACGAGGCATGGAGAAGGAGCTCGGTTGTGGCTCGGGACTTTCAACACTGCAGAAGAGGCTGCAAGGGCTTATGACAGTGCTGCTTTTTCGATGAGGGGTGCTCTTGCAATTCTCAACTTCCCACGTGAGCATGGTTTGCCAGATAGTTCTGCTGCTTCTGCTGTTTCCTCATCGTCTTCATCTTCGTCATCCCTAACATCCATTTCAGCATCATCTTCAACATTGCAGAATGTGGAAGGCACAACTAGGACAGAACCCAGAAGAGAAGTCTTCGAGATTGAGTGTTTAGATGACAAGGGTAGTATGGGATTTGAGTCCTATGAAAAGTGTCGTGAGTTGTCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

154

Amino Acids

16.81

Weight (kDa)

7.78

Isoelectric Point (pI)

59.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 72	9.3e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19650 AT1G19650 AT1G19650 AT1G75370 AT1G75370
fragaria_vesca	FvH4_2g39420 FvH4_2g39420
malus_domestica	MD08G1026500.v1.1 MD15G1023300.v1.1
prunus_persica	Prupe.1G375200_v2.0.a1 Prupe.1G375200_v2.0.a1
pyrus_communis	pycom08g02050 pycom15g01930
rosa_chinensis	RchiOBHm_Chr6g0301561
rosa_laevigata	RLG00000011244
rosa_multiflora	Rmu_ssc0000452.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166650
rosa_rugosa	Rorug06G0306100 Rorug06G0306200 Rorug06G0306300
rosa_samantha	Rh6AG419800 Rh6BG425800 Rh6CG432800 Rh6DG419000
rosa_wichuraiana	Rw6G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	117, 160, 336
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	2 cut(s)	139, 220
Alw26I	GTCTC	1 cut(s)	3
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	24, 98, 176, 197, 269
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	285, 379
Bbv12I	GWGCWC	2 cut(s)	139, 220
BbvI	GCAGC	5 cut(s)	36, 110, 163, 184, 256
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	2 cut(s)	363, 463
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
BlsI	GCNGC	5 cut(s)	26, 100, 178, 199, 271
BmeT110I	CYCGRG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	335
BpiI	GAAGAC	2 cut(s)	285, 379
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	305, 314
BseMI	GCAATG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	81, 88
BseXI	GCAGC	5 cut(s)	36, 110, 163, 184, 256
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	139, 220
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	57, 166
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	57, 166
BsnI	GGCC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	139, 220
Bsp19I	CCATGG	1 cut(s)	83
BspANI	GGCC	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	165, 373
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	305, 314
BstFNI	CGCG	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 253, 275
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	36, 110, 163, 184, 256
BstV2I	GAAGAC	2 cut(s)	285, 379
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	305, 314
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 199
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	84, 125, 248
CviJI	RGCY	5 cut(s)	82, 137, 148, 176, 185
CviKI_1	RGCY	5 cut(s)	82, 137, 148, 176, 185
CviQI	GTAC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	165, 373
EarI	CTCTTC	2 cut(s)	165, 373
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	137
Eco72I	CACGTG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	3 cut(s)	87, 128, 251
FaiI	YATR	7 cut(s)	54, 85, 126, 189, 249, 422, 438
FaqI	GGGAC	2 cut(s)	57, 166
FatI	CATG	3 cut(s)	83, 124, 247
Fnu4HI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
FokI	GGATG	2 cut(s)	292, 301
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
FspBI	CTAG	2 cut(s)	363, 463
GluI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	87, 128, 251
HinfI	GANTC	3 cut(s)	11, 113, 431
Hpy188III	TCNNGA	3 cut(s)	151, 391, 449
HpyAV	CCTTC	3 cut(s)	72, 125, 347
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	167, 179, 224, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 253, 275
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	87, 128, 251
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	2 cut(s)	270, 388
Lsp1109I	GCAGC	5 cut(s)	36, 110, 163, 184, 256
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	2 cut(s)	363, 463
MaeII	ACGT	1 cut(s)	241
MboII	GAAGA	6 cut(s)	182, 285, 291, 324, 379, 390
MhlI	GDGCHC	2 cut(s)	139, 220
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	5, 440
MnlI	CCTC	8 cut(s)	14, 34, 59, 66, 114, 166, 204, 295
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 253, 275
NcoI	CCATGG	1 cut(s)	83
NlaIII	CATG	3 cut(s)	87, 128, 251
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	26, 100, 178, 199, 271
PleI	GAGTC	2 cut(s)	5, 439
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	2 cut(s)	5, 439
Ppu21I	YACGTR	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	139
SatI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
SchI	GAGTC	2 cut(s)	5, 440
SduI	GDGCHC	2 cut(s)	139, 220
SetI	ASST	2 cut(s)	139, 244
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	2 cut(s)	363, 463
SstI	GAGCTC	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	206, 390
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	2 cut(s)	169, 199
TseI	GCWGC	5 cut(s)	24, 98, 176, 197, 269
TspDTI	ATGAA	2 cut(s)	285, 453
TspRI	CASTG	2 cut(s)	169, 199
XspI	CTAG	2 cut(s)	363, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.