Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007051

Physical Location & Seq

Genomic Coordinates Reverse (-)

45737742 .. 45738185

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0306300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAAGAAGATCCCAGCAAAAGCAACAAGATAGAAGAGGAGGGACAGAAATATGTCAAGTACAGAGGAGTAAGAAGAAGGCCATGGGGAAAGTTTGCAGCAGAAATACGCGATTCGACAAGGCAAGGAGTTCGGTTGTGGCTTGGGACTTTTAATACTGCAAAAGAGGCTGCAAGGGCATATGACAAAGCCGCTTTCTCTATGAGGGGTCCTCTTGCAATTCTCAATTTCCCTAGTGAGCATGGTTTTGTAGATGCTGATTACGCTGCTGCTACTTCCTCATCTTTCACAGCATCATCTTCAACACTGCATAACATGGAAGTGACAATGAGAACAGAACCCAGAAAAGAAGTTTTTGTGTTCGAGTATCTAGATGACAAGGTTTTAGAGGAACTTCTTGATTTTGAAAACAATAGCAAGAGAGTGGAACTTGGTGTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

147

Amino Acids

16.79

Weight (kDa)

6.76

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 70	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19650 AT1G19650 AT1G19650 AT1G75370 AT1G75370
fragaria_vesca	FvH4_2g39420 FvH4_2g39420
malus_domestica	MD08G1026500.v1.1 MD15G1023300.v1.1
prunus_persica	Prupe.1G375200_v2.0.a1 Prupe.1G375200_v2.0.a1
pyrus_communis	pycom08g02050 pycom15g01930
rosa_chinensis	RchiOBHm_Chr6g0301561
rosa_laevigata	RLG00000011244
rosa_multiflora	Rmu_ssc0000452.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166650
rosa_rugosa	Rorug06G0306100 Rorug06G0306200 Rorug06G0306300
rosa_samantha	Rh6AG419800 Rh6BG425800 Rh6CG432800 Rh6DG419000
rosa_wichuraiana	Rw6G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	62, 438
AgsI	TTSAA	2 cut(s)	303, 407
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	4 cut(s)	98, 170, 266, 269
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
BbvI	GCAGC	4 cut(s)	110, 157, 253, 256
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BfaI	CTAG	2 cut(s)	234, 371
BisI	GCNGC	5 cut(s)	99, 171, 192, 267, 270
BlsI	GCNGC	5 cut(s)	100, 172, 193, 268, 271
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	2 cut(s)	244, 302
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BsaJI	CCNNGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	53, 81
BseXI	GCAGC	4 cut(s)	110, 157, 253, 256
BseYI	CCCAGC	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	57, 160
BsmFI	GGGAC	2 cut(s)	57, 160
BsnI	GGCC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 263
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	110, 157, 253, 256
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	61, 437
CviAII	CATG	3 cut(s)	84, 242, 316
CviJI	RGCY	4 cut(s)	82, 142, 170, 191
CviKI_1	RGCY	4 cut(s)	82, 142, 170, 191
CviQI	GTAC	2 cut(s)	61, 437
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	3 cut(s)	87, 245, 319
FaiI	YATR	8 cut(s)	54, 85, 181, 183, 203, 243, 312, 317
FaqI	GGGAC	2 cut(s)	57, 160
FatI	CATG	3 cut(s)	83, 241, 315
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	99, 171, 192, 267, 270
Fsp4HI	GCNGC	5 cut(s)	99, 171, 192, 267, 270
FspBI	CTAG	2 cut(s)	234, 371
GluI	GCNGC	5 cut(s)	99, 171, 192, 267, 270
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	87, 245, 319
HinfI	GANTC	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188III	TCNNGA	2 cut(s)	371, 398
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	98, 161, 173, 218, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 263
Hsp92II	CATG	3 cut(s)	87, 245, 319
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	28, 355
Lsp1109I	GCAGC	4 cut(s)	110, 157, 253, 256
LweI	GCATC	2 cut(s)	244, 302
MaeI	CTAG	2 cut(s)	234, 371
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	4 cut(s)	20, 47, 87, 291
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	2 cut(s)	219, 226
MnlI	CCTC	8 cut(s)	31, 34, 59, 160, 198, 222, 289, 382
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 263
NcoI	CCATGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	87, 245, 319
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	100, 172, 193, 268, 271
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsrI	GAACNNNNNNTAC	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	62, 438
RsaNI	GTAC	2 cut(s)	61, 437
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	5 cut(s)	99, 171, 192, 267, 270
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	209
SetI	ASST	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	244, 302
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	219, 226
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	2 cut(s)	234, 371
StyI	CCWWGG	1 cut(s)	83
TaqI	TCGA	2 cut(s)	116, 363
TasI	AATT	2 cut(s)	219, 226
TatI	WGTACW	2 cut(s)	60, 436
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	98, 170, 266, 269
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	370
XspI	CTAG	2 cut(s)	234, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.