Rw6G036290

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
60780636 .. 60784493
3858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036290.1

Sequence Viewer

Length: 1500 bp
ATGTGGGCCAACATGATTCAATGGAGGAAAGATTTTGGTACCGACACGATTTTGGAGGATTTTGAGTTTGGTGAGTTGGATCAAGTTCGGAAGTACTACCCTCAGTGCTACCATGGTGTCGACAAGGAGGGGAGACCTGTTTATATTGAAAGATTGGGGAAAGTTGATCCCAATAAGCTTCTGCAAGTGACTTCTTTGGAGCGATATGTGAAATATCATGTGCAGGAATTTGAAAAGAGTTTTGCCATTAAGTTTCCAGCCTGCTCTATTGCTGCAAAGAGGCATATAGATTCAAGTACAACAATCTTAGATGTTCACGGCGTGGGTTTTAAAAACTTTACCAAGTCTGCACGAGATCTCATCACGCGACTGCAGAAGATTGATAATGACAACTACCCTGAGACACTTTGCAGAATGTTTATAATCAATGCTGGTCCTGGTTTTAGGCTCCTTTGGAATACTGTTAAGACATTTCTTGATCCCAGAACCACCACCAAGATTCATGTTCTGGGTAACAAGTACCAGTCAAAATTACTTGAAGTAATTGCTGCAAGTGAGTTGCCAGAATCTCTGGGTGGTAGCTGCACCTGTTCCGACGAGGGAGGTTGTATGAGGTCTGACAAGGGGCCATGGAAGGATCCCAACATTTTAAAGATGGTACTTAGTGGTGAGGCACAATGTTTCAGACAAATAGTTACAGTTTCAAACAGTGACGGTCGGATAATTGCTTCTGATAAGCCACGTTTTGCAAATATAAGAAGTAGTGATACATCTACCGCGGAGTCAGGATCAGAAGTTGAAGAAATGGCTTCACCCAAAGCAACTAGGAGTTACTTGCAACCTAAGTTGACTCCTGTTTGTGAAGAAGCTAGGGCGGCTGGCAAAGGAAGCAGTGCTAGCAGCTTGCCTGAGTATGATGAATATGTTCCCATGGTTGACAAGGCTGTGGATATGGGATGGAAGCAACAAGTTGTCCAACAAAATCCACTTGATCCTGGAGGGGCATCTTCTCCACGACTTGAGGAAAAGACACCAAATGGAATCTGTGCTTATGTCTGGACTAGGATTATGGCATTCCTTCTTACCCTTGTTACTCTCTTGCAATCTGTTTCCTTTCGGGTGACTAAGAAGCTTCCAAACTCGGTTTCGGATTCCACCCACGACATTCCCGTCCTGACTGCTGAATCAATTCCAAACGAGGAGTTTCGGCCCCCATCACCGGCACCAGGGTTTACCAGGGTAGATCTTCTCTCATCTGCTTTGCAAAAGCTTGGTGAACTTGAAGAGAAGGTAGACAAGCTACAAGCAAAGCCTTACGAGATGCCTCATGAGAAAGAGGAGTTACTGAATGCTGCTGTTTGTCGTGTGGATGCATTAGAAGCAGAGTTAATTGCAACAAAGAAGGCTCTGCATGATGCTTTAATGAGGCAGGAAGAACTTCTTGCATATTTAGACAGGCAAGAACAAGCCAAGCTTCTGAAAAAAAGGTTTTGCTGGTGA

Protein Analysis

499

Amino Acids

56.1

Weight (kDa)

6.32

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 31 - 193 2.1e-31 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AasI GACNNNNNNGTC 1 cut(s) 1169
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 2 cut(s) 38, 1222
AccI GTMKAC 2 cut(s) 120, 1293
AccII CGCG 2 cut(s) 367, 779
AciI CCGC 3 cut(s) 777, 779, 875
AclWI GGATC 7 cut(s) 87, 161, 473, 632, 645, 796, 986
AcsI RAATTY 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 5 cut(s) 40, 95, 298, 521, 660
AfiI CCNNNNNNNGG 2 cut(s) 1219, 1226
AgsI TTSAA 8 cut(s) 20, 149, 233, 294, 539, 705, 800, 1283
AjnI CCWGG 4 cut(s) 436, 994, 1225, 1235
AjuI GAANNNNNNNTTGG 2 cut(s) 1129, 1161
AluBI AGCT 8 cut(s) 178, 582, 869, 903, 1132, 1270, 1300, 1474
AluI AGCT 8 cut(s) 178, 582, 869, 903, 1132, 1270, 1300, 1474
Alw26I GTCTC 2 cut(s) 127, 395
AlwI GGATC 7 cut(s) 87, 161, 473, 632, 645, 796, 986
AoxI GGCC 3 cut(s) 6, 626, 1208
ApeKI GCWGC 5 cut(s) 272, 548, 582, 900, 1352
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 3 cut(s) 924, 1188, 1437
Asp718I GGTACC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 6, 434, 626, 1209
AsuHPI GGTGA 6 cut(s) 83, 680, 804, 1132, 1209, 1286
AsuNHI GCTAGC 1 cut(s) 896
AvaII GGWCC 1 cut(s) 434
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 2 cut(s) 38, 1222
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BauI CACGAG 1 cut(s) 351
BbvI GCAGC 5 cut(s) 259, 535, 569, 912, 1339
BccI CCATC 3 cut(s) 649, 951, 1222
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 4 cut(s) 438, 996, 1227, 1237
BcoDI GTCTC 2 cut(s) 127, 395
BfaI CTAG 4 cut(s) 825, 870, 897, 1062
BfmI CTRYAG 1 cut(s) 371
BglII AGATCT 2 cut(s) 355, 1243
BisI GCNGC 6 cut(s) 273, 549, 583, 876, 901, 1353
BlsI GCNGC 6 cut(s) 274, 550, 584, 877, 902, 1354
BmcAI AGTACT 1 cut(s) 95
Bme1390I CCNGG 4 cut(s) 438, 996, 1227, 1237
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 4 cut(s) 6, 434, 626, 1209
BmiI GGNNCC 6 cut(s) 40, 449, 627, 639, 1211, 1224
BmrFI CCNGG 4 cut(s) 438, 996, 1227, 1237
BmsI GCATC 4 cut(s) 1013, 1311, 1360, 1405
BmtI GCTAGC 1 cut(s) 900
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 1040
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 6 cut(s) 112, 629, 777, 930, 1226, 1236
Bsc4I CCNNNNNNNGG 2 cut(s) 1219, 1226
Bse118I RCCGGY 1 cut(s) 1219
Bse1I ACTGG 1 cut(s) 523
BseBI CCWGG 4 cut(s) 438, 996, 1227, 1237
BseDI CCNNGG 6 cut(s) 112, 629, 777, 930, 1226, 1236
BseGI GGATG 2 cut(s) 962, 1375
BseLI CCNNNNNNNGG 2 cut(s) 1219, 1226
BseMII CTCAG 3 cut(s) 116, 390, 900
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 1214, 1352
BseXI GCAGC 5 cut(s) 259, 535, 569, 912, 1339
BsgI GTGCAG 3 cut(s) 242, 333, 568
Bsh1236I CGCG 2 cut(s) 367, 779
Bsh1285I CGRYCG 1 cut(s) 718
BshFI GGCC 3 cut(s) 8, 628, 1210
BshNI GGYRCC 2 cut(s) 38, 1222
BsiEI CGRYCG 1 cut(s) 718
BsiSI CCGG 1 cut(s) 1220
BslI CCNNNNNNNGG 2 cut(s) 1219, 1226
BsmAI GTCTC 2 cut(s) 127, 395
BsmI GAATGC 2 cut(s) 1073, 1354
BsnI GGCC 3 cut(s) 8, 628, 1210
Bso31I GGTCTC 1 cut(s) 127
Bsp143I GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
Bsp19I CCATGG 3 cut(s) 112, 629, 930
BspACI CCGC 3 cut(s) 777, 779, 875
BspANI GGCC 3 cut(s) 8, 628, 1210
BspCNI CTCAG 3 cut(s) 115, 391, 901
BspFNI CGCG 2 cut(s) 367, 779
BspHI TCATGA 1 cut(s) 1327
BspLI GGNNCC 6 cut(s) 40, 449, 627, 639, 1211, 1224
BspMAI CTGCAG 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 7 cut(s) 87, 161, 473, 632, 645, 796, 986
BspT107I GGYRCC 2 cut(s) 38, 1222
BspTNI GGTCTC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 1219
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 1219
BssECI CCNNGG 6 cut(s) 112, 629, 777, 930, 1226, 1236
BssMI GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 3 cut(s) 112, 629, 930
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 4 cut(s) 438, 996, 1227, 1237
Bst4CI ACNGT 4 cut(s) 463, 700, 710, 716
Bst6I CTCTTC 1 cut(s) 1278
BstC8I GCNNGC 4 cut(s) 262, 880, 898, 905
BstDEI CTNAG 7 cut(s) 102, 307, 399, 662, 843, 909, 1125
BstDSI CCRYGG 4 cut(s) 112, 629, 777, 930
BstF5I GGATG 2 cut(s) 962, 1375
BstFNI CGCG 2 cut(s) 367, 779
BstKTI GATC 8 cut(s) 82, 169, 358, 481, 640, 791, 994, 1246
BstMAI GTCTC 2 cut(s) 127, 395
BstMBI GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
BstMCI CGRYCG 1 cut(s) 718
BstMWI GCNNNNNNNGC 4 cut(s) 875, 888, 897, 1379
BstNI CCWGG 4 cut(s) 438, 996, 1227, 1237
BstSCI CCNGG 4 cut(s) 436, 994, 1225, 1235
BstSFI CTRYAG 1 cut(s) 371
BstUI CGCG 2 cut(s) 367, 779
BstV1I GCAGC 5 cut(s) 259, 535, 569, 912, 1339
BstX2I RGATCY 3 cut(s) 355, 637, 1243
BstYI RGATCY 3 cut(s) 355, 637, 1243
BsuRI GGCC 3 cut(s) 8, 628, 1210
BtgI CCRYGG 4 cut(s) 112, 629, 777, 930
BtsCI GGATG 2 cut(s) 962, 1375
BtsI GCAGTG 1 cut(s) 898
BtsIMutI CAGTG 3 cut(s) 110, 715, 898
Cac8I GCNNGC 4 cut(s) 262, 880, 898, 905
CciI TCATGA 1 cut(s) 1327
Cfr10I RCCGGY 1 cut(s) 1219
Cfr13I GGNCC 4 cut(s) 6, 434, 626, 1209
Cfr42I CCGCGG 1 cut(s) 780
Csp6I GTAC 5 cut(s) 39, 94, 297, 520, 659
CviAII CATG 8 cut(s) 13, 113, 218, 503, 630, 931, 1328, 1412
CviQI GTAC 5 cut(s) 39, 94, 297, 520, 659
DdeI CTNAG 7 cut(s) 102, 307, 399, 662, 843, 909, 1125
DpnI GATC 8 cut(s) 81, 168, 357, 480, 639, 790, 993, 1245
DpnII GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
DraI TTTAAA 2 cut(s) 331, 651
DraIII CACNNNGTG 1 cut(s) 322
DrdI GACNNNNNNGTC 1 cut(s) 1169
DseDI GACNNNNNNGTC 1 cut(s) 1169
Eam1104I CTCTTC 1 cut(s) 1278
EarI CTCTTC 1 cut(s) 1278
Eco130I CCWWGG 3 cut(s) 112, 629, 930
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 434
EcoRII CCWGG 4 cut(s) 436, 994, 1225, 1235
EcoT14I CCWWGG 3 cut(s) 112, 629, 930
EcoT22I ATGCAT 1 cut(s) 1375
ErhI CCWWGG 3 cut(s) 112, 629, 930
FaeI CATG 8 cut(s) 16, 116, 221, 506, 633, 934, 1331, 1415
FalI AAGNNNNNCTT 4 cut(s) 1425, 1457, 1458, 1490
FatI CATG 8 cut(s) 12, 112, 217, 502, 629, 930, 1327, 1411
FblI GTMKAC 2 cut(s) 120, 1293
Fnu4HI GCNGC 6 cut(s) 273, 549, 583, 876, 901, 1353
FokI GGATG 2 cut(s) 969, 1382
Fsp4HI GCNGC 6 cut(s) 273, 549, 583, 876, 901, 1353
FspBI CTAG 4 cut(s) 825, 870, 897, 1062
GluI GCNGC 6 cut(s) 273, 549, 583, 876, 901, 1353
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 3 cut(s) 8, 628, 1210
HapII CCGG 1 cut(s) 1220
Hin1II CATG 8 cut(s) 16, 116, 221, 506, 633, 934, 1331, 1415
HincII GTYRAC 3 cut(s) 121, 849, 937
HindII GTYRAC 3 cut(s) 121, 849, 937
HindIII AAGCTT 4 cut(s) 176, 1130, 1268, 1472
HinfI GANTC 9 cut(s) 16, 290, 499, 566, 782, 850, 1041, 1151, 1184
HpaII CCGG 1 cut(s) 1220
HphI GGTGA 6 cut(s) 83, 680, 804, 1132, 1209, 1286
Hpy166II GTNNAC 7 cut(s) 121, 316, 849, 937, 1233, 1277, 1294
Hpy188I TCNGA 9 cut(s) 90, 595, 619, 686, 720, 733, 793, 1150, 1479
Hpy188III TCNNGA 5 cut(s) 476, 786, 1057, 1174, 1328
Hpy8I GTNNAC 7 cut(s) 121, 316, 849, 937, 1233, 1277, 1294
Hpy99I CGWCG 1 cut(s) 599
HpyAV CCTTC 4 cut(s) 628, 1088, 1282, 1396
HpyCH4III ACNGT 4 cut(s) 463, 700, 710, 716
HpyCH4IV ACGT 1 cut(s) 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 875, 888, 897, 1379
HpyF3I CTNAG 7 cut(s) 102, 307, 399, 662, 843, 909, 1125
HpySE526I ACGT 1 cut(s) 742
Hsp92II CATG 8 cut(s) 16, 116, 221, 506, 633, 934, 1331, 1415
KpnI GGTACC 1 cut(s) 42
KspI CCGCGG 1 cut(s) 780
Kzo9I GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
LmnI GCTCC 2 cut(s) 199, 453
Lsp1109I GCAGC 5 cut(s) 259, 535, 569, 912, 1339
LweI GCATC 4 cut(s) 1013, 1311, 1360, 1405
MaeI CTAG 4 cut(s) 825, 870, 897, 1062
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 8 cut(s) 187, 512, 694, 710, 830, 1090, 1120, 1341
MalI GATC 8 cut(s) 81, 168, 357, 480, 639, 790, 993, 1245
MboI GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
MboII GAAGA 7 cut(s) 388, 812, 875, 999, 1238, 1295, 1445
MflI RGATCY 3 cut(s) 355, 637, 1243
MluCI AATT 6 cut(s) 227, 530, 543, 723, 1188, 1389
MlyI GAGTC 2 cut(s) 791, 844
MmeI TCCRAC 4 cut(s) 57, 618, 698, 1000
Mph1103I ATGCAT 1 cut(s) 1375
MroXI GAANNNNTTC 3 cut(s) 924, 1188, 1437
MseI TTAA 6 cut(s) 249, 330, 465, 650, 1388, 1421
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 1 cut(s) 1220
MspR9I CCNGG 4 cut(s) 438, 996, 1227, 1237
Mva1269I GAATGC 2 cut(s) 1073, 1354
MvaI CCWGG 4 cut(s) 438, 996, 1227, 1237
MvnI CGCG 2 cut(s) 367, 779
MwoI GCNNNNNNNGC 4 cut(s) 875, 888, 897, 1379
NcoI CCATGG 3 cut(s) 112, 629, 930
NdeII GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 8 cut(s) 16, 116, 221, 506, 633, 934, 1331, 1415
NlaIV GGNNCC 6 cut(s) 40, 449, 627, 639, 1211, 1224
NmuCI GTSAC 3 cut(s) 187, 710, 1120
NsiI ATGCAT 1 cut(s) 1375
PagI TCATGA 1 cut(s) 1327
PcsI WCGNNNNNNNCGW 1 cut(s) 1167
PctI GAATGC 2 cut(s) 1073, 1354
PdmI GAANNNNTTC 3 cut(s) 924, 1188, 1437
PfeI GAWTC 7 cut(s) 16, 290, 499, 566, 1041, 1151, 1184
PfoI TCCNGGA 1 cut(s) 994
PkrI GCNGC 6 cut(s) 274, 550, 584, 877, 902, 1354
PleI GAGTC 2 cut(s) 790, 844
PpsI GAGTC 2 cut(s) 790, 844
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 4 cut(s) 436, 994, 1225, 1235
PspGI CCWGG 4 cut(s) 436, 994, 1225, 1235
PspN4I GGNNCC 6 cut(s) 40, 449, 627, 639, 1211, 1224
PspPI GGNCC 4 cut(s) 6, 434, 626, 1209
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 3 cut(s) 355, 637, 1243
RsaI GTAC 5 cut(s) 40, 95, 298, 521, 660
RsaNI GTAC 5 cut(s) 39, 94, 297, 520, 659
SacII CCGCGG 1 cut(s) 780
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 6 cut(s) 249, 330, 465, 650, 1388, 1421
SatI GCNGC 6 cut(s) 273, 549, 583, 876, 901, 1353
Sau3AI GATC 8 cut(s) 79, 166, 355, 478, 637, 788, 991, 1243
Sau96I GGNCC 4 cut(s) 6, 434, 626, 1209
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 2 cut(s) 791, 844
ScrFI CCNGG 4 cut(s) 438, 996, 1227, 1237
SfaNI GCATC 4 cut(s) 1013, 1311, 1360, 1405
SfcI CTRYAG 1 cut(s) 371
Sfr303I CCGCGG 1 cut(s) 780
SgrBI CCGCGG 1 cut(s) 780
SinI GGWCC 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
Sse9I AATT 6 cut(s) 227, 530, 543, 723, 1188, 1389
SsiI CCGC 3 cut(s) 777, 779, 875
SspMI CTAG 4 cut(s) 825, 870, 897, 1062
StyD4I CCNGG 4 cut(s) 436, 994, 1225, 1235
StyI CCWWGG 3 cut(s) 112, 629, 930
TaaI ACNGT 4 cut(s) 463, 700, 710, 716
TaiI ACGT 1 cut(s) 745
TaqI TCGA 1 cut(s) 120
TasI AATT 6 cut(s) 227, 530, 543, 723, 1188, 1389
TatI WGTACW 2 cut(s) 93, 296
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 7 cut(s) 16, 290, 499, 566, 1041, 1151, 1184
Tru1I TTAA 6 cut(s) 249, 330, 465, 650, 1388, 1421
Tru9I TTAA 6 cut(s) 249, 330, 465, 650, 1388, 1421
TscAI CASTG 3 cut(s) 110, 715, 898
TseFI GTSAC 3 cut(s) 187, 710, 1120
TseI GCWGC 5 cut(s) 272, 548, 582, 900, 1352
Tsp45I GTSAC 3 cut(s) 187, 710, 1120
TspDTI ATGAA 2 cut(s) 491, 933
TspRI CASTG 3 cut(s) 110, 715, 898
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 120, 1293
XmnI GAANNNNTTC 3 cut(s) 924, 1188, 1437
XspI CTAG 4 cut(s) 825, 870, 897, 1062
ZrmI AGTACT 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.