Rorug06G0401100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008693
Physical Location & Seq
Reverse (-)
54607448 .. 54614328
6881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0401100.1

Sequence Viewer

Length: 2886 bp
ATGGCATCGACCGACAATGAGCTCGAAGCACAGCTATTGGAAGCTGGGAATCAACTCCTGGAGCCGCCGTCCACCGTCGACGACCTCCTTCCTCTTCTCGACAGGGTTGAAAGTTGTCTATCAAAGGTAGAACAATCACCAAACAAGTCAATGCAAGCCGCACTTTCACCGTCGCAGAAGGCGTTGGTTGCTGATCAACTTTTAAGGCATTCAGATCCTGATGTCAAAGTTTCAGTTGCGTCTTGCATCAGTGAGATAACAAGAATAACAGCACCTGATGCACCATATGATGATGACCAAATGAAGGAGGTCTTTCAGCTTATTGTATCTTCATTTGAAAATCTAGATGACAAGTGCAGTCGATCATACACAAAGAGGACATCCATTCTTGAAACTGTTGCAAAGGTCAGGTCCTGTGTTGTAATGTTGGATCTTGAATGCGATGCATTGATCGTTGAGATGTTCCAGCATTTTCTCAAGGCAATAAGGGATTATCACCCAGAGAATGTTTTCTCATCGATGGAGACAATTATGACCCTTGTTATAGAAGAAAGTGAAGACATATCTTTTGAACTTCTTTCTCCCTTATTAGCTAGTGTGAAAAATGATGATGAGGACATTTTACCAATTTCTCGGAAGTTGGGCGAAAGAGTAATCGAAAACTCTGCTATTAAACTTAAGCCCCACCTGGCACAGGAAGTAGAAACCCATGGCATTGCATTAGGTGATTACAGTAAAGTAGTAGCTTCGATATGCCAAGAGACAGCTGGTGACACTGAGCAGAATGAAGTGCACGATGACGAAGATGTGGAGGACAAGTCAACAATCCGGGAATCTTCGGAAGAGGCAGTCCAGGTGGATAAAGAAAATTCCACCGCAGCAGTTTCTTCTGAACAAGTTGATACTGTTATTGATGGATCCTCAAAGGTAGTTTTGAATAATGGTGGTGCAGCAACTGGGGAAGATGAATGTTCGGCTGATTTGAACTCTTTAAAGAAGCAAGAGCAGGGTGAAGATACCGAGGAAGTCAAAGGTCCAAATACATCAAGTGTTGCTGAACCTGATAGTTTGGAGACTGAGAAGGCTGTTGATGCAAAACAAATGCCAGAAGAAGTTAGCGAGGATAAAGATAAGGATTCTAATTTGTCAACAGCACAACCTGCAGACAGTCCTCAAGCTGATAATGAGGAAGAAACCGAGGCACTTCCGCCCCATAAAAGTGGCTCTGAAGATGCTCCCGGTTCACCTCATGAGGTTCCTGATGTGGAGGCAGCTGTGCCTTCAGAAAATGAGAAAGGGTCGGATATAAATCTCTCCACTGCATTGGAGAAGGAATCAACTGATGTTGCTCCCCCATCCCCAAGTGGGAGCCTTCCTGATGAAAGTCGTCCCAAAAAGGCTGGACGACATAAGAAGAAAGATACTTCTAATAAAGAGGCTACACCTGTTACTGATGATGAATCCAAAAAGGCAACTGATGGAACAAGTGATTCAGAATTAAGATCAAGTAAGCACTCTGGGAAAAAGGTCTCTGCTGGGGGTTCTAATGAGAATAAAAGTCCCATTGTGGTGGATGCATCTAGAAAGGAAAGTGGCACTGCTAGTGATTCAGAGGTAAAACAGAAGTCATCTAAGAAGGTTTCTACTGGGAATTCTAAGGAGAATAATACTTCAGTTGTGGTAGATGCACCTAGAAAGGAAAGTAGCAGCACAAGTGATTCAGAGGCAAGACAGAAGTTAGCTAAGAAGGTTGATGGAAGCAATAAGACTAGTGATGAGTCTTCTTTGAAGCAGCCAGAAGATAAGAAGAAGCGTGCACGCAGTAAAGTTTCTTCAAGAAGAAGCTCAACAAAATCCTCGGCCATGGAAGTTGACAAGGAGATATTGTCGACACCCAAGTCAAAATCTACCAAGAATGAACTTCCATTGGAGGAGACTCCTAAGACAAATTCCAAGAGGAAGCGTCCTTCGGAAAAAGAAAAGCAATCTGGTGTAAAAGAGTTTGATGACACTGAGGTGATTGGTTCAAAGATAAAAGTTTGGTGGCCAGCGGATCGCATGTATTATAAAGGTGTTGTCCATTCTTTTGATTCTGTTAAAAAGAAGCATGTGGTGAAATATAATGATGGAGATCAGGAAATTTTGAATCTTAAAAGAGAGAAATGGCTGTATGTAGAAGGTGACTCTGAATCAGATGGGGAGCAGGAAAATGATGAGTCGAGTCACGATGGCTCTTCTGAACTGCCCCTGAAGAAGAAAGCGAAAAGTAATCGTGATGGATCAACTAAGAAAGAAAAGATGGATGCTACACCCAAATCGGGTGGAGGAGCTTCCTCCAGCAAATCAAAAGGCAGAACCACAAAGTCTGGTCGTAAGCAGAGAGACAGCAGTAAACCTGATGGCAGATCCAAAGGTGATACATCCAAGGCTGTTGGCAAAACAGATGATGATTGTGTTGGAAAATTAAAGGATCAAACTCCAAAAAGTGGTGGTAAATCAGTGGATGTTGCTCAGAAGACATCCAGCAAATCAAAGAACAATGAGTCCCAGACACCTAAGAGTAGCAAATCCAAGGAGGATGATAGCAACACCCAAAGAGTTTCAATTAAGTCCAAGCAAGACATGCAGAAGGCTGGGAAGTCAAATCAAGGCACACCAAAGACTAGTGCCTCCACTCCCAAGGGTAAATCCTCTCTGAGTAGTAGCAAAGCAAATGGCAAGGTGAAATCTGGTTCAAAAGCAAGAGAGAGCGAGGATATGGAGGAGGACTCCACTGATTCGGAAAAAGCACCAGAAAGGACCAAGGGAAAGTCAACAAGTTCATCTAAGGCACAGGGAAGCCAGACCAAGTCTGGTAAGAAGCGAAGGAGAGGAACCAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

961

Amino Acids

104.03

Weight (kDa)

5.44

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 27 - 232 5e-54 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2067
AasI GACNNNNNNGTC 1 cut(s) 1897
Acc36I ACCTGC 1 cut(s) 1168
AccB7I CCANNNNNTGG 1 cut(s) 2486
AccI GTMKAC 2 cut(s) 78, 1889
AciI CCGC 5 cut(s) 65, 159, 876, 1208, 2051
AclWI GGATC 8 cut(s) 209, 438, 912, 925, 2061, 2287, 2400, 2478
AcoI YGGCCR 2 cut(s) 1860, 2045
AcsI RAATTY 4 cut(s) 868, 1651, 1948, 2139
AcuI CTGAAG 4 cut(s) 1248, 1266, 1656, 2270
AfiI CCNNNNNNNGG 5 cut(s) 304, 694, 1365, 2318, 2486
AflII CTTAAG 1 cut(s) 677
AhlI ACTAGT 2 cut(s) 1769, 2663
AjnI CCWGG 3 cut(s) 57, 687, 852
AleI CACNNNNGTG 1 cut(s) 2015
AloI GAACNNNNNNTCC 2 cut(s) 2528, 2560
Alw21I GWGCWC 3 cut(s) 24, 795, 1819
Alw26I GTCTC 6 cut(s) 518, 755, 1067, 1534, 1928, 2376
Alw44I GTGCAC 2 cut(s) 791, 1815
AlwI GGATC 8 cut(s) 209, 438, 912, 925, 2061, 2287, 2400, 2478
AlwNI CAGNNNCTG 4 cut(s) 218, 275, 414, 956
AoxI GGCC 2 cut(s) 1860, 2045
ApaLI GTGCAC 2 cut(s) 791, 1815
ApeKI GCWGC 5 cut(s) 878, 950, 1271, 1707, 1792
ApoI RAATTY 4 cut(s) 868, 1651, 1948, 2139
ArsI GACNNNNNNTTYG 4 cut(s) 395, 427, 551, 583
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 3 cut(s) 411, 1034, 2799
AsuC2I CCSGG 2 cut(s) 830, 1239
AvaII GGWCC 3 cut(s) 411, 1034, 2799
BaeGI GKGCMC 2 cut(s) 795, 1819
BalI TGGCCA 1 cut(s) 2047
BamHI GGATCC 1 cut(s) 917
BanII GRGCYC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 1816, 1848
BbsI GAAGAC 3 cut(s) 564, 1773, 2522
Bbv12I GWGCWC 3 cut(s) 24, 795, 1819
BbvI GCAGC 5 cut(s) 890, 962, 1283, 1719, 1804
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 3 cut(s) 59, 689, 854
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 2 cut(s) 830, 1239
BcoDI GTCTC 6 cut(s) 518, 755, 1067, 1534, 1928, 2376
BcuI ACTAGT 2 cut(s) 1769, 2663
BfaI CTAG 7 cut(s) 344, 594, 1581, 1602, 1692, 1770, 2664
BfmI CTRYAG 1 cut(s) 1161
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 1 cut(s) 1168
BisI GCNGC 7 cut(s) 65, 159, 879, 951, 1272, 1708, 1793
BlsI GCNGC 7 cut(s) 66, 160, 880, 952, 1273, 1709, 1794
Bme1390I CCNGG 5 cut(s) 59, 689, 830, 854, 1239
Bme18I GGWCC 3 cut(s) 411, 1034, 2799
BmgT120I GGNCC 3 cut(s) 411, 1034, 2799
BmiI GGNNCC 5 cut(s) 63, 919, 1257, 1370, 2875
BmrFI CCNGG 5 cut(s) 59, 689, 830, 854, 1239
BmrI ACTGGG 2 cut(s) 966, 1656
BmuI ACTGGG 2 cut(s) 966, 1656
BpiI GAAGAC 3 cut(s) 564, 1773, 2522
BplI GAGNNNNNCTC 2 cut(s) 2753, 2785
BpmI CTGGAG 2 cut(s) 80, 2320
BpuEI CTTGAG 2 cut(s) 461, 1158
BpuMI CCSGG 2 cut(s) 830, 1239
Bsa29I ATCGAT 1 cut(s) 518
BsaBI GATNNNNATC 2 cut(s) 1308, 2130
BsaI GGTCTC 1 cut(s) 1534
BsaJI CCNNGG 9 cut(s) 709, 1020, 1197, 1857, 1863, 2424, 2571, 2679, 2802
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 803, 833, 1871, 1901
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 694, 1365, 2318, 2486
Bse1I ACTGG 2 cut(s) 961, 1651
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 2 cut(s) 1308, 2130
BseBI CCWGG 3 cut(s) 59, 689, 854
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 9 cut(s) 709, 1020, 1197, 1857, 1863, 2424, 2571, 2679, 2802
BseGI GGATG 8 cut(s) 380, 1355, 1579, 2308, 2420, 2509, 2519, 2584
BseJI GATNNNNATC 2 cut(s) 1308, 2130
BseLI CCNNNNNNNGG 5 cut(s) 304, 694, 1365, 2318, 2486
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 5 cut(s) 768, 1068, 2004, 2525, 2687
BseNI ACTGG 2 cut(s) 961, 1651
BseRI GAGGAG 3 cut(s) 1946, 2340, 2777
BseSI GKGCMC 2 cut(s) 795, 1819
BseXI GCAGC 5 cut(s) 890, 962, 1283, 1719, 1804
BseYI CCCAGC 3 cut(s) 44, 1535, 2633
BsgI GTGCAG 2 cut(s) 376, 969
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 1862, 2047
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 24, 795, 1819
BsiSI CCGG 2 cut(s) 829, 1239
BslFI GGGAC 3 cut(s) 1374, 1545, 2530
BslI CCNNNNNNNGG 5 cut(s) 304, 694, 1365, 2318, 2486
BsmAI GTCTC 6 cut(s) 518, 755, 1067, 1534, 1928, 2376
BsmFI GGGAC 3 cut(s) 1374, 1545, 2530
BsmI GAATGC 2 cut(s) 208, 443
BsnI GGCC 2 cut(s) 1862, 2047
Bso31I GGTCTC 1 cut(s) 1534
Bsp1286I GDGCHC 3 cut(s) 24, 795, 1819
Bsp19I CCATGG 2 cut(s) 709, 1863
BspACI CCGC 5 cut(s) 65, 159, 876, 1208, 2051
BspANI GGCC 2 cut(s) 1862, 2047
BspCNI CTCAG 5 cut(s) 769, 1069, 2005, 2524, 2688
BspDI ATCGAT 1 cut(s) 518
BspHI TCATGA 1 cut(s) 1249
BspLI GGNNCC 5 cut(s) 63, 919, 1257, 1370, 2875
BspMAI CTGCAG 1 cut(s) 1165
BspMI ACCTGC 1 cut(s) 1168
BspPI GGATC 8 cut(s) 209, 438, 912, 925, 2061, 2287, 2400, 2478
BspQI GCTCTTC 1 cut(s) 2239
BspTI CTTAAG 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 1534
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 2 cut(s) 961, 1651
BssECI CCNNGG 9 cut(s) 709, 1020, 1197, 1857, 1863, 2424, 2571, 2679, 2802
BssT1I CCWWGG 6 cut(s) 709, 1863, 2424, 2571, 2679, 2802
Bst2UI CCWGG 3 cut(s) 59, 689, 854
Bst4CI ACNGT 6 cut(s) 76, 171, 397, 734, 907, 1169
Bst6I CTCTTC 3 cut(s) 99, 837, 2239
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 3 cut(s) 278, 1160, 2623
BstC8I GCNNGC 4 cut(s) 156, 1815, 1819, 2049
BstDSI CCRYGG 2 cut(s) 709, 1863
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 8 cut(s) 380, 1355, 1579, 2308, 2420, 2509, 2519, 2584
BstMAI GTCTC 6 cut(s) 518, 755, 1067, 1534, 1928, 2376
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 5 cut(s) 188, 278, 1091, 1160, 2623
BstNI CCWGG 3 cut(s) 59, 689, 854
BstNSI RCATGY 3 cut(s) 2062, 2111, 2626
BstSCI CCNGG 5 cut(s) 57, 687, 828, 852, 1237
BstSFI CTRYAG 1 cut(s) 1161
BstSLI GKGCMC 2 cut(s) 795, 1819
BstV1I GCAGC 5 cut(s) 890, 962, 1283, 1719, 1804
BstV2I GAAGAC 3 cut(s) 564, 1773, 2522
BstX2I RGATCY 4 cut(s) 214, 430, 917, 2405
BstXI CCANNNNNNTGG 3 cut(s) 1220, 1324, 1570
BstYI RGATCY 4 cut(s) 214, 430, 917, 2405
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 2 cut(s) 1862, 2047
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 2 cut(s) 709, 1863
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 8 cut(s) 380, 1355, 1579, 2308, 2420, 2509, 2519, 2584
BtsI GCAGTG 2 cut(s) 1317, 1596
BtsIMutI CAGTG 7 cut(s) 256, 774, 1317, 1596, 2010, 2505, 2772
BveI ACCTGC 1 cut(s) 1168
Cac8I GCNNGC 4 cut(s) 156, 1815, 1819, 2049
CaiI CAGNNNCTG 4 cut(s) 218, 275, 414, 956
CciI TCATGA 1 cut(s) 1249
Cfr13I GGNCC 3 cut(s) 411, 1034, 2799
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 2 cut(s) 228, 1952
CspCI CAANNNNNGTGG 2 cut(s) 2302, 2337
CviAII CATG 6 cut(s) 710, 1250, 1864, 2059, 2108, 2623
DraI TTTAAA 1 cut(s) 993
DrdI GACNNNNNNGTC 1 cut(s) 1897
DseDI GACNNNNNNGTC 1 cut(s) 1897
EaeI YGGCCR 2 cut(s) 1860, 2045
Eam1104I CTCTTC 3 cut(s) 99, 837, 2239
EarI CTCTTC 3 cut(s) 99, 837, 2239
EciI GGCGGA 1 cut(s) 1197
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 6 cut(s) 709, 1863, 2424, 2571, 2679, 2802
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 1534
Eco47I GGWCC 3 cut(s) 411, 1034, 2799
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 4 cut(s) 1248, 1266, 1656, 2270
EcoICRI GAGCTC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 1651
EcoRII CCWGG 3 cut(s) 57, 687, 852
EcoT14I CCWWGG 6 cut(s) 709, 1863, 2424, 2571, 2679, 2802
EcoT22I ATGCAT 2 cut(s) 448, 1579
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 6 cut(s) 709, 1863, 2424, 2571, 2679, 2802
FaeI CATG 6 cut(s) 713, 1253, 1867, 2062, 2111, 2626
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 296, 328
FaqI GGGAC 3 cut(s) 1374, 1545, 2530
FatI CATG 6 cut(s) 709, 1249, 1863, 2058, 2107, 2622
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 2 cut(s) 78, 1889
Fnu4HI GCNGC 7 cut(s) 65, 159, 879, 951, 1272, 1708, 1793
FokI GGATG 8 cut(s) 367, 1342, 1586, 2315, 2407, 2506, 2516, 2591
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 7 cut(s) 65, 159, 879, 951, 1272, 1708, 1793
FspBI CTAG 7 cut(s) 344, 594, 1581, 1602, 1692, 1770, 2664
GluI GCNGC 7 cut(s) 65, 159, 879, 951, 1272, 1708, 1793
GsaI CCCAGC 3 cut(s) 48, 1539, 2637
GsuI CTGGAG 2 cut(s) 80, 2320
HaeIII GGCC 2 cut(s) 1862, 2047
HapII CCGG 2 cut(s) 829, 1239
HgaI GACGC 2 cut(s) 228, 1952
Hin1II CATG 6 cut(s) 713, 1253, 1867, 2062, 2111, 2626
HincII GTYRAC 6 cut(s) 79, 822, 1149, 1873, 1890, 2814
HindII GTYRAC 6 cut(s) 79, 822, 1149, 1873, 1890, 2814
HpaII CCGG 2 cut(s) 829, 1239
Hpy99I CGWCG 3 cut(s) 80, 83, 175
HpyCH4III ACNGT 6 cut(s) 76, 171, 397, 734, 907, 1169
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 278, 1091, 1160, 2623
Hsp92II CATG 6 cut(s) 713, 1253, 1867, 2062, 2111, 2626
Ksp22I TGATCA 1 cut(s) 193
LguI GCTCTTC 1 cut(s) 2239
LmnI GCTCC 6 cut(s) 61, 1240, 1354, 1368, 2200, 2327
Lsp1109I GCAGC 5 cut(s) 890, 962, 1283, 1719, 1804
MaeI CTAG 7 cut(s) 344, 594, 1581, 1602, 1692, 1770, 2664
MaeIII GTNAC 4 cut(s) 770, 1447, 2180, 2222
MflI RGATCY 4 cut(s) 214, 430, 917, 2405
MhlI GDGCHC 3 cut(s) 24, 795, 1819
MlsI TGGCCA 1 cut(s) 2047
MluNI TGGCCA 1 cut(s) 2047
MlyI GAGTC 7 cut(s) 1787, 1930, 2177, 2225, 2230, 2552, 2762
MmeI TCCRAC 3 cut(s) 408, 1281, 2437
Mox20I TGGCCA 1 cut(s) 2047
Mph1103I ATGCAT 2 cut(s) 448, 1579
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 1 cut(s) 2047
MslI CAYNNNNRTG 3 cut(s) 1218, 1568, 2015
Msp20I TGGCCA 1 cut(s) 2047
MspA1I CMGCKG 3 cut(s) 767, 1274, 2051
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 829, 1239
MspR9I CCNGG 5 cut(s) 59, 689, 830, 854, 1239
Mva1269I GAATGC 2 cut(s) 208, 443
MvaI CCWGG 3 cut(s) 59, 689, 854
MwoI GCNNNNNNNGC 5 cut(s) 188, 278, 1091, 1160, 2623
NciI CCSGG 2 cut(s) 830, 1239
NcoI CCATGG 2 cut(s) 709, 1863
NdeI CATATG 1 cut(s) 286
NlaIII CATG 6 cut(s) 713, 1253, 1867, 2062, 2111, 2626
NlaIV GGNNCC 5 cut(s) 63, 919, 1257, 1370, 2875
NmeAIII GCCGAG 1 cut(s) 1838
NmuCI GTSAC 3 cut(s) 770, 2180, 2222
NsiI ATGCAT 2 cut(s) 448, 1579
NspI RCATGY 3 cut(s) 2062, 2111, 2626
OliI CACNNNNGTG 1 cut(s) 2015
PagI TCATGA 1 cut(s) 1249
PciSI GCTCTTC 1 cut(s) 2239
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 2 cut(s) 208, 443
PdmI GAANNNNTTC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 2848
PflMI CCANNNNNTGG 1 cut(s) 2486
PfoI TCCNGGA 2 cut(s) 57, 828
PkrI GCNGC 7 cut(s) 66, 160, 880, 952, 1273, 1709, 1794
PleI GAGTC 7 cut(s) 1786, 1930, 2177, 2224, 2229, 2551, 2762
PpsI GAGTC 7 cut(s) 1786, 1930, 2177, 2224, 2229, 2551, 2762
PpuMI RGGWCCY 1 cut(s) 411
PsiI TTATAA 1 cut(s) 2067
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 57, 687, 852
PspFI CCCAGC 3 cut(s) 44, 1535, 2633
PspGI CCWGG 3 cut(s) 57, 687, 852
PspN4I GGNNCC 5 cut(s) 63, 919, 1257, 1370, 2875
PspPI GGNCC 3 cut(s) 411, 1034, 2799
PspPPI RGGWCCY 1 cut(s) 411
PstI CTGCAG 1 cut(s) 1165
PstNI CAGNNNCTG 4 cut(s) 218, 275, 414, 956
PsuI RGATCY 4 cut(s) 214, 430, 917, 2405
PsyI GACNNNGTC 1 cut(s) 2848
PvuII CAGCTG 2 cut(s) 767, 1274
RseI CAYNNNNRTG 3 cut(s) 1218, 1568, 2015
SacI GAGCTC 1 cut(s) 24
SalI GTCGAC 2 cut(s) 77, 1888
SapI GCTCTTC 1 cut(s) 2239
SatI GCNGC 7 cut(s) 65, 159, 879, 951, 1272, 1708, 1793
Sau96I GGNCC 3 cut(s) 411, 1034, 2799
SchI GAGTC 7 cut(s) 1787, 1930, 2177, 2225, 2230, 2552, 2762
ScrFI CCNGG 5 cut(s) 59, 689, 830, 854, 1239
SduI GDGCHC 3 cut(s) 24, 795, 1819
SfcI CTRYAG 1 cut(s) 1161
SgrDI CGTCGACG 1 cut(s) 77
SinI GGWCC 3 cut(s) 411, 1034, 2799
SmiMI CAYNNNNRTG 3 cut(s) 1218, 1568, 2015
SmlI CTYRAG 3 cut(s) 476, 677, 1173
SmoI CTYRAG 3 cut(s) 476, 677, 1173
SpeI ACTAGT 2 cut(s) 1769, 2663
SsiI CCGC 5 cut(s) 65, 159, 876, 1208, 2051
SspMI CTAG 7 cut(s) 344, 594, 1581, 1602, 1692, 1770, 2664
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 5 cut(s) 57, 687, 828, 852, 1237
StyI CCWWGG 6 cut(s) 709, 1863, 2424, 2571, 2679, 2802
TaaI ACNGT 6 cut(s) 76, 171, 397, 734, 907, 1169
TaqII GACCGA 1 cut(s) 26
TauI GCSGC 2 cut(s) 67, 161
TscAI CASTG 7 cut(s) 256, 781, 1324, 1603, 2017, 2505, 2779
TseFI GTSAC 3 cut(s) 770, 2180, 2222
TseI GCWGC 5 cut(s) 878, 950, 1271, 1707, 1792
Tsp45I GTSAC 3 cut(s) 770, 2180, 2222
TspDTI ATGAA 8 cut(s) 317, 321, 801, 981, 1395, 1473, 1932, 2811
TspRI CASTG 7 cut(s) 256, 781, 1324, 1603, 2017, 2505, 2779
Tth111I GACNNNGTC 1 cut(s) 2848
Van91I CCANNNNNTGG 1 cut(s) 2486
Vha464I CTTAAG 1 cut(s) 677
VneI GTGCAC 2 cut(s) 791, 1815
VpaK11BI GGWCC 3 cut(s) 411, 1034, 2799
XagI CCTNNNNNAGG 1 cut(s) 692
XapI RAATTY 4 cut(s) 868, 1651, 1948, 2139
XbaI TCTAGA 2 cut(s) 343, 1580
XceI RCATGY 3 cut(s) 2062, 2111, 2626
XcmI CCANNNNNNNNNTGG 2 cut(s) 764, 2849
XmiI GTMKAC 2 cut(s) 78, 1889
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 7 cut(s) 344, 594, 1581, 1602, 1692, 1770, 2664
Zsp2I ATGCAT 2 cut(s) 448, 1579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.