Rorug06G0467500

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016335
Physical Location & Seq
Forward (+)
59170442 .. 59170919
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0467500.1

Sequence Viewer

Length: 399 bp
ATGTGCCTGTGCTTAAATTTATGGGGAGGACAGGTGAAAAATAAGCCTTCCTTTGATGCCCTACTCTCGGACATATGTATTGCAACCTCAGCGGCACCAACTTATCTTCCAGCTCATTATTTTGAAACCAACGGCCTAAAAGGAAAAGTTAGAGAATTTCACCTGATAGATGGTGGATTGGCAGCAAATAATCCGACTTTGATTGCTATTGGTGAAGTGACAAAGGAAATAGTTAAGGGGAATTCAGACTTCTTTCCTATAAAACCAATGGACTATGGACGATTTCTGGTGATATCCTTAGGAACTGGCTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTGGAATTGGTTAACGAGCGGTGGTTCCACCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.26

Weight (kDa)

8.45

Isoelectric Point (pI)

17.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 14 - 70 3.6e-08 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016335)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12280
malus_domestica MD06G1215300.v1.1 MD14G1226200.v1.1
prunus_persica Prupe.5G220600_v2.0.a1
pyrus_communis pycom06g19200
rosa_chinensis RchiOBHm_Chr7g0185281
rosa_laevigata RLG00000004925
rosa_multiflora Rmu_sc0008496.1_g000015
rosa_roxburghii Rroxscaffold_3G00269090
rosa_rugosa Rorug06G0467500
rosa_samantha Rh7AG075200 Rh7BG072000 Rh7CG073200 Rh7DG072700
rosa_wichuraiana Rw7G006050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 381
AciI CCGC 2 cut(s) 92, 381
AcsI RAATTY 3 cut(s) 16, 155, 241
AfiI CCNNNNNNNGG 2 cut(s) 67, 354
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 2 cut(s) 113, 320
AluI AGCT 2 cut(s) 113, 320
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 16, 155, 241
AsuHPI GGTGA 4 cut(s) 46, 152, 224, 301
AxyI CCTNAGG 1 cut(s) 298
BanI GGYRCC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 93, 183
BlsI GCNGC 2 cut(s) 94, 184
BmiI GGNNCC 2 cut(s) 96, 388
BmsI GCATC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 354
Bse1I ACTGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 67, 354
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 67, 354
BsnI GGCC 1 cut(s) 135
BspACI CCGC 2 cut(s) 92, 381
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 96, 388
BspT107I GGYRCC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 381
BsrI ACTGG 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 88, 298
BstMWI GCNNNNNNNGC 2 cut(s) 89, 344
BstV1I GCAGC 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 298
BsuRI GGCC 1 cut(s) 135
CviAII CATG 1 cut(s) 341
CviJI RGCY 5 cut(s) 46, 113, 135, 309, 320
CviKI_1 RGCY 5 cut(s) 46, 113, 135, 309, 320
DdeI CTNAG 2 cut(s) 88, 298
Eco32I GATATC 1 cut(s) 294
Eco81I CCTNAGG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 294
FaeI CATG 1 cut(s) 344
FaiI YATR 7 cut(s) 22, 74, 76, 260, 276, 342, 397
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 340
FauNDI CATATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 93, 183
Fsp4HI GCNGC 2 cut(s) 93, 183
GluI GCNGC 2 cut(s) 93, 183
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 344
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HpaI GTTAAC 1 cut(s) 375
HphI GGTGA 4 cut(s) 46, 152, 224, 301
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 3 cut(s) 70, 195, 247
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 344
HpyF3I CTNAG 2 cut(s) 88, 298
Hsp92II CATG 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 375
LpnPI CCDG 6 cut(s) 17, 20, 123, 176, 272, 291
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 381
MboII GAAGA 1 cut(s) 98
MluCI AATT 4 cut(s) 16, 155, 241, 367
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 3 cut(s) 20, 97, 358
MseI TTAA 3 cut(s) 14, 234, 374
MspA1I CMGCKG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 89, 344
NdeI CATATG 1 cut(s) 74
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 96, 388
NmuCI GTSAC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 94, 184
PspN4I GGNNCC 2 cut(s) 96, 388
SaqAI TTAA 3 cut(s) 14, 234, 374
SatI GCNGC 2 cut(s) 93, 183
SetI ASST 5 cut(s) 36, 89, 115, 165, 322
SfaNI GCATC 1 cut(s) 46
Sse9I AATT 4 cut(s) 16, 155, 241, 367
SsiI CCGC 2 cut(s) 92, 381
TaqI TCGA 1 cut(s) 314
TasI AATT 4 cut(s) 16, 155, 241, 367
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 14, 234, 374
Tru9I TTAA 3 cut(s) 14, 234, 374
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 217
XapI RAATTY 3 cut(s) 16, 155, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.