Rh7DG072700

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016335
Physical Location & Seq
Reverse (-)
5617195 .. 5619012
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG072700.1

Sequence Viewer

Length: 708 bp
ATGGATAACAGTAACCCTAATGGGAAGAGACCCCGAGATGATGACTCGGCCGACTCGGGACGGAACGAGGCTGCAGAGTTTCGTCCCGAGTCGAAACTTATCCGAGTTGATTCCAGCAGCTCAATTAACTCGGATGCAAGCTCGGGCGACTCCAACGTCCGAGTCAACTCGGACGAGTTCGACATGGACTCGGCCGAGGCAAAGATGATTCAGGAAGACCTGTTGAACATACTGGACGACTCGGAGGCCGTGACGGACCCTGACCCGGCAATTCAGGGGCTGGACTCGGTCATTAAAAGCTTCGAGGAGGAGATACAAGTTCCGGCAGCACCGGCATTTGCTCCTCCGGTTGAAACGACGTCGGGCTCGGGAGAGTCTTCCCCGTCGTCGCAGCCGGAGCTCGGTTACTTACTGGAGGCTTCGGACGACGAGCTTGGTCTCCCGCCGACGAACAATGGAGCTGCGAGGGAGGAGAAGAAAATGGAGGCGGCGGATTTCACGCTGAGTCCTCCGGCGGCCGCATTGGACGGAATGCTTGGGTTCGAGAACGACATGATTCCGAGTTACGACGCGTTCGATTTCGGAATCGGTGGGTACTCGGACAGTAATGGCGGCGGAGAGTACGTGGCGTTGGGTGGCTTGTTTGACTACTCGGACGGCGGCGCTACGGAGGTGTCGTGGCGGACGGAGTCGCTTCCTGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

24.78

Weight (kDa)

4.05

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016335)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12280
malus_domestica MD06G1215300.v1.1 MD14G1226200.v1.1
prunus_persica Prupe.5G220600_v2.0.a1
pyrus_communis pycom06g19200
rosa_chinensis RchiOBHm_Chr7g0185281
rosa_laevigata RLG00000004925
rosa_multiflora Rmu_sc0008496.1_g000015
rosa_roxburghii Rroxscaffold_3G00269090
rosa_rugosa Rorug06G0467500
rosa_samantha Rh7AG075200 Rh7BG072000 Rh7CG073200 Rh7DG072700
rosa_wichuraiana Rw7G006050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AatII GACGTC 1 cut(s) 362
AccII CGCG 1 cut(s) 572
AciI CCGC 9 cut(s) 443, 488, 491, 515, 519, 612, 615, 660, 682
AcoI YGGCCR 3 cut(s) 48, 192, 516
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 2 cut(s) 596, 623
AfiI CCNNNNNNNGG 2 cut(s) 265, 401
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 2 cut(s) 226, 353
AluBI AGCT 6 cut(s) 120, 141, 300, 400, 433, 461
AluI AGCT 6 cut(s) 120, 141, 300, 400, 433, 461
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 22, 443
AlwNI CAGNNNCTG 1 cut(s) 280
Ama87I CYCGRG 5 cut(s) 33, 55, 86, 142, 367
AoxI GGCC 4 cut(s) 48, 192, 246, 516
ApeKI GCWGC 5 cut(s) 71, 117, 326, 391, 461
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 266
AvaI CYCGRG 5 cut(s) 33, 55, 86, 142, 367
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 2 cut(s) 368, 402
BbsI GAAGAC 2 cut(s) 222, 369
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 58, 129, 338, 403, 448
BceAI ACGGC 2 cut(s) 233, 673
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 22, 443
BfmI CTRYAG 2 cut(s) 72, 704
BfoI RGCGCY 1 cut(s) 666
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 5 cut(s) 33, 55, 86, 142, 367
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 2 cut(s) 222, 369
BpmI CTGGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 359
BsaI GGTCTC 2 cut(s) 22, 443
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 4 cut(s) 609, 639, 662, 692
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 401
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 237, 417
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 265, 401
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 237, 417
BseRI GAGGAG 4 cut(s) 320, 323, 333, 485
BseX3I CGGCCG 3 cut(s) 48, 192, 516
BseXI GCAGC 5 cut(s) 58, 129, 338, 403, 448
Bsh1236I CGCG 1 cut(s) 572
Bsh1285I CGRYCG 3 cut(s) 51, 195, 519
BshFI GGCC 4 cut(s) 50, 194, 248, 518
BsiEI CGRYCG 3 cut(s) 51, 195, 519
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 5 cut(s) 33, 55, 86, 142, 367
BsiSI CCGG 6 cut(s) 266, 323, 332, 347, 395, 512
BslFI GGGAC 2 cut(s) 69, 72
BslI CCNNNNNNNGG 2 cut(s) 265, 401
BsmAI GTCTC 2 cut(s) 22, 443
BsmFI GGGAC 2 cut(s) 69, 72
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 4 cut(s) 50, 194, 248, 518
Bso31I GGTCTC 2 cut(s) 22, 443
BsoBI CYCGRG 5 cut(s) 33, 55, 86, 142, 367
Bsp1286I GDGCHC 2 cut(s) 368, 402
BspACI CCGC 9 cut(s) 443, 488, 491, 515, 519, 612, 615, 660, 682
BspANI GGCC 4 cut(s) 50, 194, 248, 518
BspCNI CTCAG 1 cut(s) 495
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 76
BspTNI GGTCTC 2 cut(s) 22, 443
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 2 cut(s) 237, 417
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 11, 605
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 572
BstH2I RGCGCY 1 cut(s) 666
BstHHI GCGC 1 cut(s) 665
BstMAI GTCTC 2 cut(s) 22, 443
BstMCI CGRYCG 3 cut(s) 51, 195, 519
BstMWI GCNNNNNNNGC 2 cut(s) 332, 397
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 2 cut(s) 72, 704
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 5 cut(s) 58, 129, 338, 403, 448
BstV2I GAAGAC 2 cut(s) 222, 369
BstZI CGGCCG 3 cut(s) 48, 192, 516
BsuRI GGCC 4 cut(s) 50, 194, 248, 518
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 280
CciNI GCGGCCGC 1 cut(s) 516
CfoI GCGC 1 cut(s) 665
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 595, 622
CviAII CATG 2 cut(s) 184, 553
CviQI GTAC 2 cut(s) 595, 622
DdeI CTNAG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 3 cut(s) 48, 192, 516
EagI CGGCCG 3 cut(s) 48, 192, 516
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 3 cut(s) 506, 630, 697
Ecl136II GAGCTC 1 cut(s) 400
EclXI CGGCCG 3 cut(s) 48, 192, 516
Eco24I GRGCYC 2 cut(s) 368, 402
Eco31I GGTCTC 2 cut(s) 22, 443
Eco47I GGWCC 1 cut(s) 256
Eco52I CGGCCG 3 cut(s) 48, 192, 516
Eco53kI GAGCTC 1 cut(s) 400
Eco88I CYCGRG 5 cut(s) 33, 55, 86, 142, 367
EcoICRI GAGCTC 1 cut(s) 400
EcoT38I GRGCYC 2 cut(s) 368, 402
FaeI CATG 2 cut(s) 187, 556
FaiI YATR 4 cut(s) 185, 230, 554, 706
FaqI GGGAC 2 cut(s) 69, 72
FatI CATG 2 cut(s) 183, 552
FauI CCCGC 1 cut(s) 450
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 2 cut(s) 368, 402
GlaI GCGC 1 cut(s) 664
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 666
HaeIII GGCC 4 cut(s) 50, 194, 248, 518
HapII CCGG 6 cut(s) 266, 323, 332, 347, 395, 512
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 2 cut(s) 187, 556
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 298
HpaII CCGG 6 cut(s) 266, 323, 332, 347, 395, 512
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 5 cut(s) 57, 86, 212, 369, 544
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 7 cut(s) 361, 364, 388, 391, 431, 451, 572
HpyCH4III ACNGT 2 cut(s) 11, 605
HpyCH4IV ACGT 3 cut(s) 156, 359, 624
HpyCH4V TGCA 2 cut(s) 74, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 397
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 3 cut(s) 156, 359, 624
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 2 cut(s) 187, 556
HspAI GCGC 1 cut(s) 663
LmnI GCTCC 3 cut(s) 346, 397, 458
Lsp1109I GCAGC 5 cut(s) 58, 129, 338, 403, 448
LweI GCATC 1 cut(s) 124
MaeII ACGT 3 cut(s) 156, 359, 624
MaeIII GTNAC 4 cut(s) 11, 250, 404, 563
MboII GAAGA 4 cut(s) 37, 227, 369, 487
MhlI GDGCHC 2 cut(s) 368, 402
MluCI AATT 2 cut(s) 123, 270
MluI ACGCGT 1 cut(s) 570
MmeI TCCRAC 1 cut(s) 177
MseI TTAA 2 cut(s) 126, 294
MspI CCGG 6 cut(s) 266, 323, 332, 347, 395, 512
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 537
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 332, 397
NciI CCSGG 1 cut(s) 266
NlaIII CATG 2 cut(s) 187, 556
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 3 cut(s) 26, 170, 220
NmuCI GTSAC 1 cut(s) 250
NotI GCGGCCGC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 573, 674
PctI GAATGC 1 cut(s) 537
PfeI GAWTC 4 cut(s) 110, 208, 556, 585
PflFI GACNNNGTC 2 cut(s) 287, 688
Ppu21I YACGTR 1 cut(s) 625
Psp124BI GAGCTC 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 280
PsyI GACNNNGTC 2 cut(s) 287, 688
RsaI GTAC 2 cut(s) 596, 623
RsaNI GTAC 2 cut(s) 595, 622
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 126, 294
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 2 cut(s) 368, 402
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 2 cut(s) 72, 704
SinI GGWCC 1 cut(s) 256
Sse9I AATT 2 cut(s) 123, 270
SsiI CCGC 9 cut(s) 443, 488, 491, 515, 519, 612, 615, 660, 682
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 11, 605
TaiI ACGT 3 cut(s) 159, 362, 627
TaqI TCGA 5 cut(s) 92, 180, 303, 543, 576
TaqII GACCGA 1 cut(s) 277
TasI AATT 2 cut(s) 123, 270
TauI GCSGC 5 cut(s) 491, 518, 521, 615, 663
TfiI GAWTC 4 cut(s) 110, 208, 556, 585
Tru1I TTAA 2 cut(s) 126, 294
Tru9I TTAA 2 cut(s) 126, 294
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 5 cut(s) 71, 117, 326, 391, 461
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 5 cut(s) 76, 269, 543, 683, 701
Tth111I GACNNNGTC 2 cut(s) 287, 688
VpaK11BI GGWCC 1 cut(s) 256
ZraI GACGTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.