Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010436

Physical Location & Seq

Genomic Coordinates Forward (+)

308647 .. 310819

Gene Structure 2173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGATGGGGGATGTTTTGAAAAGAGCAAGATTGGAAACAGCAGTCTGGGCTGGAAAGCTGTTACTGCTCTGTGTAGGAATAGTGTCCACAATGGTATTTTTCAAAGTGGTAATCATTCCTTACCTCCTTAATCTCACTCTTTCCACTCTTCCCCACCTCTGGACCTCAATCAGAAGCTACTGCCTATCTCCACTTTACATCTACATCATTCTCAATTTTATCATCATAATCATCGCTGCCTCCTCCACATTCCAAAATCAAAATCAAAAGCAAAAGCAAAAGCACCCCTCATCTGTGCCCTCCTCCTACACCTCCATTAATAACCTAAACAATGCCAAGACCACTAGTACTGATCATGAAGATGACTGTTGTACTTTTATTGATGGTACGGCAGAGTACAACAGCAATAAGATCGAAAGTAGTAGTCATTCCGAAAATGCAACTACTTCTCCTCTACCGTCTTTGCTTACTCATCAATTTTCAAATGAAATGATCAGCTGGCATGACATCCACATAGTACAACAAGCTTCCACAGAAGAAGAAGAATCCATTCGTACCAACCCTTCACCGGAGGAACCCTCCTCCTCGGAGGACTCTTGCTTGACGGAGAAGCCGGTCACCGAGGAAGAGGTGGAAGACAACACATTGGACACCACATGGAATGCCATTATGGAAAGGCAAGGCAAACCGATATGCAAGCATCTAAAAAAGAGTGAGACTTGGGACACGCCGCCTCGGACGACTGGCTTGGTGAGAAGTAGTATTGTTCCAGCCAGGGAGCTAGTTGAGGAGGATCAGTTAGATGATCATCATCATGAGAACATCAACAACAATAATAATAATGTTGTTGATGATCGAGTGGCATGGGCTCGGAAAGAGTTGAAGAAGTCGGACACTTTTAACGACAGGGTGTCCATGATAAGGGAGAAGTCCATGACTCAGGACGAATTGAACCAGCGGGCGGAGGCCTTCATCAACAAGATCAATAATCAGATAAGGCTTCAGAGGCTAGAATCTGATCAACGTTTCAGGGACATGGTTAACCGTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

351

Amino Acids

40.12

Weight (kDa)

5.36

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	51 - 84	3.1e-09	Domain of unknown function (DUF4408)
DUF761	PF05553	314 - 349	2.4e-12	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15530
fragaria_vesca	FvH4_5g06170
malus_domestica	MD06G1166300.v1.1
prunus_persica	Prupe.5G166300_v2.0.a1 Prupe.5G166300_v2.0.a1
pyrus_communis	pycom06g14890 pycom10g29130 pycom14g14370
rosa_chinensis	RchiOBHm_Chr7g0192631
rosa_laevigata	RLG00000004340 RLG00000004343 RLG00000036720
rosa_multiflora	Rmu_sc0002040.1_g000001 Rmu_sc0035522.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262790 Rroxscaffold_3G00262820
rosa_rugosa	Rorug07G0003200 Rorug07G0003300
rosa_samantha	Rh7BG129900 Rh7DG130900
rosa_wichuraiana	Rw7G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	731, 958, 962
AclI	AACGTT	1 cut(s)	1024
AclWI	GGATC	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	986
AfaI	GTAC	6 cut(s)	349, 373, 388, 398, 519, 556
AfiI	CCNNNNNNNGG	4 cut(s)	159, 568, 921, 961
AgsI	TTSAA	5 cut(s)	19, 103, 483, 883, 952
AhdI	GACNNNNNGTC	1 cut(s)	910
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	773
AluBI	AGCT	5 cut(s)	58, 177, 498, 527, 781
AluI	AGCT	5 cut(s)	58, 177, 498, 527, 781
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	801
AoxI	GGCC	1 cut(s)	966
ApeKI	GCWGC	1 cut(s)	236
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	558, 610, 763
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	871
BarI	GAAGNNNNNNTAC	2 cut(s)	547, 579
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	775
BclI	TGATCA	4 cut(s)	352, 492, 805, 1018
BcoDI	GTCTC	1 cut(s)	710
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	4 cut(s)	345, 782, 1010, 1054
BisI	GCNGC	2 cut(s)	237, 731
BlsI	GCNGC	2 cut(s)	238, 732
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	775
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BsaBI	GATNNNNATC	2 cut(s)	807, 810
BsaJI	CCNNGG	5 cut(s)	585, 621, 734, 774, 1045
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	4 cut(s)	433, 463, 782, 812
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 568, 921, 961
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	748
Bse8I	GATNNNNATC	2 cut(s)	807, 810
BseBI	CCWGG	1 cut(s)	775
BseDI	CCNNGG	5 cut(s)	585, 621, 734, 774, 1045
BseGI	GGATG	2 cut(s)	16, 507
BseJI	GATNNNNATC	2 cut(s)	807, 810
BseLI	CCNNNNNNNGG	4 cut(s)	159, 568, 921, 961
BseMII	CTCAG	1 cut(s)	953
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	6 cut(s)	232, 292, 441, 571, 574, 803
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	968
BsiSI	CCGG	2 cut(s)	569, 614
BslFI	GGGAC	2 cut(s)	737, 1046
BslI	CCNNNNNNNGG	4 cut(s)	159, 568, 921, 961
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	2 cut(s)	737, 1046
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	968
Bsp1286I	GDGCHC	2 cut(s)	300, 871
Bsp143I	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
BspACI	CCGC	3 cut(s)	731, 958, 962
BspANI	GGCC	1 cut(s)	968
BspCNI	CTCAG	1 cut(s)	952
BspHI	TCATGA	2 cut(s)	355, 814
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	801
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	748
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	5 cut(s)	585, 621, 734, 774, 1045
BssMI	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	3 cut(s)	368, 459, 1046
Bst6I	CTCTTC	2 cut(s)	153, 621
BstC8I	GCNNGC	3 cut(s)	500, 698, 960
BstDEI	CTNAG	1 cut(s)	939
BstDSI	CCRYGG	1 cut(s)	1045
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	16, 507
BstKTI	GATC	8 cut(s)	355, 414, 495, 796, 808, 856, 984, 1021
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 64, 1006
BstNI	CCWGG	1 cut(s)	775
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	773
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	968
BtgI	CCRYGG	1 cut(s)	1045
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	16, 507
Cac8I	GCNNGC	3 cut(s)	500, 698, 960
CciI	TCATGA	2 cut(s)	355, 814
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	162
Csp6I	GTAC	6 cut(s)	348, 372, 387, 397, 518, 555
CviAII	CATG	8 cut(s)	356, 503, 657, 815, 864, 916, 934, 1036
CviQI	GTAC	6 cut(s)	348, 372, 387, 397, 518, 555
DdeI	CTNAG	1 cut(s)	939
DpnI	GATC	8 cut(s)	354, 413, 494, 795, 807, 855, 983, 1020
DpnII	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
DriI	GACNNNNNGTC	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	153, 621
Eam1105I	GACNNNNNGTC	1 cut(s)	910
EarI	CTCTTC	2 cut(s)	153, 621
EciI	GGCGGA	1 cut(s)	977
Eco147I	AGGCCT	1 cut(s)	968
Eco24I	GRGCYC	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	986
Eco91I	GGTNACC	1 cut(s)	616
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	871
FaeI	CATG	8 cut(s)	359, 506, 660, 818, 867, 919, 937, 1039
FaqI	GGGAC	2 cut(s)	737, 1046
FatI	CATG	8 cut(s)	355, 502, 656, 814, 863, 915, 933, 1035
FauI	CCCGC	1 cut(s)	951
FbaI	TGATCA	4 cut(s)	352, 492, 805, 1018
Fnu4HI	GCNGC	2 cut(s)	237, 731
FokI	GGATG	2 cut(s)	23, 494
FriOI	GRGCYC	1 cut(s)	871
Fsp4HI	GCNGC	2 cut(s)	237, 731
FspBI	CTAG	4 cut(s)	345, 782, 1010, 1054
GluI	GCNGC	2 cut(s)	237, 731
HaeIII	GGCC	1 cut(s)	968
HapII	CCGG	2 cut(s)	569, 614
Hin1II	CATG	8 cut(s)	359, 506, 660, 818, 867, 919, 937, 1039
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	4 cut(s)	545, 593, 937, 1013
HpaI	GTTAAC	1 cut(s)	1042
HpaII	CCGG	2 cut(s)	569, 614
HphI	GGTGA	3 cut(s)	558, 610, 763
Hpy166II	GTNNAC	2 cut(s)	87, 1042
Hpy188I	TCNGA	9 cut(s)	173, 433, 589, 738, 873, 892, 993, 1005, 1018
Hpy188III	TCNNGA	4 cut(s)	160, 356, 815, 941
Hpy8I	GTNNAC	2 cut(s)	87, 1042
HpyAV	CCTTC	2 cut(s)	573, 979
HpyCH4III	ACNGT	3 cut(s)	368, 459, 1046
HpyCH4IV	ACGT	1 cut(s)	1024
HpyCH4V	TGCA	2 cut(s)	440, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 64, 1006
HpyF3I	CTNAG	1 cut(s)	939
HpySE526I	ACGT	1 cut(s)	1024
Hsp92II	CATG	8 cut(s)	359, 506, 660, 818, 867, 919, 937, 1039
Ksp22I	TGATCA	4 cut(s)	352, 492, 805, 1018
KspAI	GTTAAC	1 cut(s)	1042
Kzo9I	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
LmnI	GCTCC	1 cut(s)	778
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	4 cut(s)	345, 782, 1010, 1054
MaeII	ACGT	1 cut(s)	1024
MaeIII	GTNAC	2 cut(s)	60, 616
MalI	GATC	8 cut(s)	354, 413, 494, 795, 807, 855, 983, 1020
MboI	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
MboII	GAAGA	8 cut(s)	140, 371, 548, 551, 554, 638, 647, 895
MhlI	GDGCHC	2 cut(s)	300, 871
MluCI	AATT	3 cut(s)	214, 476, 947
MlyI	GAGTC	2 cut(s)	587, 931
MmeI	TCCRAC	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	4 cut(s)	129, 318, 900, 1041
MslI	CAYNNNNRTG	2 cut(s)	360, 813
MspA1I	CMGCKG	2 cut(s)	498, 958
MspI	CCGG	2 cut(s)	569, 614
MspR9I	CCNGG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	3 cut(s)	47, 64, 1006
NdeII	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
NlaIII	CATG	8 cut(s)	359, 506, 660, 818, 867, 919, 937, 1039
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	616
PagI	TCATGA	2 cut(s)	355, 814
PceI	AGGCCT	1 cut(s)	968
PctI	GAATGC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	545, 1013
PkrI	GCNGC	2 cut(s)	238, 732
PleI	GAGTC	2 cut(s)	587, 931
PpsI	GAGTC	2 cut(s)	587, 931
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	1024
Psp6I	CCWGG	1 cut(s)	773
PspEI	GGTNACC	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	498
RsaI	GTAC	6 cut(s)	349, 373, 388, 398, 519, 556
RsaNI	GTAC	6 cut(s)	348, 372, 387, 397, 518, 555
RseI	CAYNNNNRTG	2 cut(s)	360, 813
SaqAI	TTAA	4 cut(s)	129, 318, 900, 1041
SatI	GCNGC	2 cut(s)	237, 731
Sau3AI	GATC	8 cut(s)	352, 411, 492, 793, 805, 853, 981, 1018
Sau96I	GGNCC	1 cut(s)	162
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	2 cut(s)	587, 931
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	2 cut(s)	300, 871
SfaNI	GCATC	1 cut(s)	709
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	360, 813
SpeI	ACTAGT	1 cut(s)	344
Sse9I	AATT	3 cut(s)	214, 476, 947
SseBI	AGGCCT	1 cut(s)	968
SsiI	CCGC	3 cut(s)	731, 958, 962
SspMI	CTAG	4 cut(s)	345, 782, 1010, 1054
StuI	AGGCCT	1 cut(s)	968
StyD4I	CCNGG	1 cut(s)	773
TaaI	ACNGT	3 cut(s)	368, 459, 1046
TaiI	ACGT	1 cut(s)	1027
TaqI	TCGA	2 cut(s)	414, 856
TasI	AATT	3 cut(s)	214, 476, 947
TatI	WGTACW	4 cut(s)	347, 371, 396, 517
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	545, 1013
Tru1I	TTAA	4 cut(s)	129, 318, 900, 1041
Tru9I	TTAA	4 cut(s)	129, 318, 900, 1041
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	3 cut(s)	372, 501, 961
TspGWI	ACGGA	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	162
VspI	ATTAAT	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	4 cut(s)	345, 782, 1010, 1054
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.