Rorug07G0076500

Belongs to the peptidase M10A family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015037
Physical Location & Seq
Reverse (-)
5858747 .. 5861556
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0076500.1

Sequence Viewer

Length: 1077 bp
ATGCTTCCCTTGGTAAGCAGAAGGTTTAAGCTGTCGGCTAGTCTACCCTTAGTCTTCCACCACCACCGCCCACGCTTCATGGCCTCTGTAGCTCCACCGCCCAAGCGCGTCGGAACCCACAATGGAAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGATAAGTTCTCCAACGCCGAAATCGTCCGCACCCGCGACCCCAAGGTCTTGGAGGGTTTGGACGCTGTGCTTGATGTTGGGGGTGTGTATCACCCGAGCACGGATCGGTACGATCATCACCAGAAGGGGTTTGAGGAGGTTTTTGGCCATGGGTTTAAGACCAAGCTGAGTAGTGCTGGACTGGTTTACAAGCATTTTGGGAAGGAAATAATAGCCAAGGAGCTTCAAGTTGATGAAGGACACCTTGATGTGCAGAGGCTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCGATTGATGCAGTTGACAATGGGATCAATCAGTATGATACAGACCAGCCTCCAAGATATGTGAATAATACACACTTATCTTCAAGGGTCGGGAGGTTGAATATGGACTGGATAGATCCTGATCAATCATCTGAGAAGGAGAATGAAGCCTTTCAACAAGCAATGGCTCTAGCTGGCAGTGAATTTTTAAGTAGTCTGCGTTTTCATGCCAAATCATGGTTACCAGCACGGTCTATTGTGATGGAGTGTCTCCTAGCAAGATGGAGTATTGATCCTAGTGGAGAAATTATGGTTTTGAATCGGTTTTGTCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAGATGAAGATTGACCCTCCCATCAAATATGTTCTCTATCAGGATGATAGGAGTAAAAGCTGGCGAGTTCAAGCGGTGGCAGTTGCTCCTGATAGATTCGAGAGCCGAAAGCCTCTTGCATCTCAATGGCGAGGGCTTAGAGACGATGAGCTCTCAACAGCGACTGGGATACCCGGATGTGTCTTTGTCCACATGAGCGGGTTTATCGGAGGAAATCAAACATACGAGGGTGCTCTGGCCATGGCAAAGGCTAGTCTGAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

358

Amino Acids

40.52

Weight (kDa)

6.74

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 37 - 355 2.6e-137 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015037)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16640
fragaria_vesca FvH4_5g19070
malus_domestica MD04G1063000.v1.1 MD06G1057300.v1.1
prunus_persica Prupe.5G068200_v2.0.a1
pyrus_communis pycom04g05670
rosa_chinensis RchiOBHm_Chr7g0203521
rosa_laevigata RLG00000003523
rosa_multiflora Rmu_sc0022597.1_g000010
rosa_roxburghii Rroxscaffold_3G00253740
rosa_rugosa Rorug07G0076400 Rorug07G0076500
rosa_samantha Rh7AG205900 Rh7CG218700 Rh7DG213100
rosa_wichuraiana Rw7G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 1005
AccI GTMKAC 1 cut(s) 43
AccII CGCG 2 cut(s) 108, 210
AciI CCGC 6 cut(s) 67, 98, 202, 208, 881, 1005
AclWI GGATC 4 cut(s) 285, 497, 575, 731
AcoI YGGCCR 2 cut(s) 319, 1044
AcsI RAATTY 1 cut(s) 647
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 274, 681
AgsI TTSAA 8 cut(s) 401, 549, 565, 620, 763, 797, 803, 878
Alw21I GWGCWC 3 cut(s) 275, 960, 1042
Alw26I GTCTC 2 cut(s) 719, 942
AlwI GGATC 4 cut(s) 285, 497, 575, 731
AlwNI CAGNNNCTG 2 cut(s) 433, 971
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 3 cut(s) 81, 319, 1044
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 647
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 3 cut(s) 163, 257, 284
AvaI CYCGRG 1 cut(s) 268
BalI TGGCCA 2 cut(s) 321, 1046
BanII GRGCYC 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 3 cut(s) 275, 960, 1042
BbvI GCAGC 1 cut(s) 140
BccI CCATC 3 cut(s) 700, 720, 836
BciVI GTATCC 1 cut(s) 969
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 2 cut(s) 719, 942
BfaI CTAG 5 cut(s) 39, 635, 719, 741, 1059
BfmI CTRYAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 969
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 981
BmeT110I CYCGRG 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 981
BmrI ACTGGG 1 cut(s) 981
BmsI GCATC 2 cut(s) 463, 935
BmuI ACTGGG 1 cut(s) 981
BpiI GAAGAC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 981
BsaBI GATNNNNATC 1 cut(s) 585
BsaJI CCNNGG 7 cut(s) 9, 148, 216, 322, 390, 776, 1047
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 681
Bse1I ACTGG 3 cut(s) 360, 578, 976
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 585
BseDI CCNNGG 7 cut(s) 9, 148, 216, 322, 390, 776, 1047
BseGI GGATG 2 cut(s) 856, 989
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 2 cut(s) 274, 681
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 2 cut(s) 332, 588
BseNI ACTGG 3 cut(s) 360, 578, 976
BseRI GAGGAG 2 cut(s) 323, 821
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 2 cut(s) 108, 210
BshFI GGCC 3 cut(s) 83, 321, 1046
BsiHKAI GWGCWC 3 cut(s) 275, 960, 1042
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 981
BslI CCNNNNNNNGG 2 cut(s) 274, 681
BsmAI GTCTC 2 cut(s) 719, 942
BsmBI CGTCTC 1 cut(s) 942
BsnI GGCC 3 cut(s) 83, 321, 1046
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 275, 960, 1042
Bsp143I GATC 6 cut(s) 277, 286, 489, 580, 586, 736
Bsp19I CCATGG 2 cut(s) 322, 1047
BspACI CCGC 6 cut(s) 67, 98, 202, 208, 881, 1005
BspANI GGCC 3 cut(s) 83, 321, 1046
BspCNI CTCAG 2 cut(s) 333, 589
BspFNI CGCG 2 cut(s) 108, 210
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 4 cut(s) 285, 497, 575, 731
BsrBI CCGCTC 1 cut(s) 1005
BsrDI GCAATG 1 cut(s) 633
BsrI ACTGG 3 cut(s) 360, 578, 976
BssECI CCNNGG 7 cut(s) 9, 148, 216, 322, 390, 776, 1047
BssMI GATC 6 cut(s) 277, 286, 489, 580, 586, 736
BssT1I CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
Bst4CI ACNGT 1 cut(s) 696
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 2 cut(s) 640, 869
BstDEI CTNAG 4 cut(s) 49, 341, 597, 944
BstDSI CCRYGG 2 cut(s) 322, 1047
BstEII GGTNACC 1 cut(s) 684
BstF5I GGATG 2 cut(s) 856, 989
BstFNI CGCG 2 cut(s) 108, 210
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 6 cut(s) 280, 289, 492, 583, 589, 739
BstMAI GTCTC 2 cut(s) 719, 942
BstMBI GATC 6 cut(s) 277, 286, 489, 580, 586, 736
BstMWI GCNNNNNNNGC 3 cut(s) 89, 135, 473
BstPI GGTNACC 1 cut(s) 684
BstSCI CCNGG 1 cut(s) 979
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 2 cut(s) 108, 210
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 580
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 3 cut(s) 83, 321, 1046
BtgI CCRYGG 2 cut(s) 322, 1047
BtsCI GGATG 2 cut(s) 856, 989
BtsI GCAGTG 2 cut(s) 133, 649
BtsIMutI CAGTG 2 cut(s) 133, 649
Cac8I GCNNGC 2 cut(s) 640, 869
CaiI CAGNNNCTG 2 cut(s) 433, 971
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 108
CseI GACGC 2 cut(s) 97, 245
Csp6I GTAC 1 cut(s) 283
CviAII CATG 7 cut(s) 79, 160, 323, 671, 681, 1000, 1048
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 4 cut(s) 49, 341, 597, 944
DpnI GATC 6 cut(s) 279, 288, 491, 582, 588, 738
DpnII GATC 6 cut(s) 277, 286, 489, 580, 586, 736
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 319, 1044
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
Eco24I GRGCYC 1 cut(s) 960
Eco53kI GAGCTC 1 cut(s) 958
Eco88I CYCGRG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 958
EcoO65I GGTNACC 1 cut(s) 684
EcoT14I CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
Esp3I CGTCTC 1 cut(s) 942
FaeI CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 7 cut(s) 78, 159, 322, 670, 680, 999, 1047
FauI CCCGC 2 cut(s) 215, 998
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 2 cut(s) 863, 996
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 5 cut(s) 39, 635, 719, 741, 1059
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 154
HaeIII GGCC 3 cut(s) 83, 321, 1046
HapII CCGG 1 cut(s) 981
HgaI GACGC 2 cut(s) 97, 245
HhaI GCGC 1 cut(s) 108
Hin1II CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 4 cut(s) 127, 454, 782, 1067
HinfI GANTC 3 cut(s) 163, 763, 903
HpaII CCGG 1 cut(s) 981
HphI GGTGA 3 cut(s) 163, 257, 284
Hpy166II GTNNAC 5 cut(s) 44, 361, 448, 481, 997
Hpy188I TCNGA 4 cut(s) 113, 598, 1016, 1065
Hpy188III TCNNGA 6 cut(s) 160, 556, 584, 848, 896, 907
Hpy8I GTNNAC 5 cut(s) 44, 361, 448, 481, 997
Hpy99I CGWCG 2 cut(s) 113, 143
HpyAV CCTTC 5 cut(s) 15, 292, 370, 404, 595
HpyCH4III ACNGT 1 cut(s) 696
HpyCH4V TGCA 3 cut(s) 427, 476, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 135, 473
HpyF3I CTNAG 4 cut(s) 49, 341, 597, 944
Hsp92II CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 6 cut(s) 277, 286, 489, 580, 586, 736
LmnI GCTCC 3 cut(s) 97, 394, 898
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 463, 935
MaeI CTAG 5 cut(s) 39, 635, 719, 741, 1059
MaeIII GTNAC 1 cut(s) 684
MalI GATC 6 cut(s) 279, 288, 491, 582, 588, 738
MbiI CCGCTC 1 cut(s) 1005
MboI GATC 6 cut(s) 277, 286, 489, 580, 586, 736
MboII GAAGA 4 cut(s) 46, 537, 815, 826
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 3 cut(s) 275, 960, 1042
MlsI TGGCCA 2 cut(s) 321, 1046
MluCI AATT 2 cut(s) 647, 750
MluNI TGGCCA 2 cut(s) 321, 1046
MmeI TCCRAC 2 cut(s) 91, 210
Mox20I TGGCCA 2 cut(s) 321, 1046
MroXI GAANNNNTTC 1 cut(s) 615
MscI TGGCCA 2 cut(s) 321, 1046
MseI TTAA 3 cut(s) 27, 330, 653
MslI CAYNNNNRTG 2 cut(s) 420, 931
Msp20I TGGCCA 2 cut(s) 321, 1046
MspI CCGG 1 cut(s) 981
MspR9I CCNGG 1 cut(s) 981
MvnI CGCG 2 cut(s) 108, 210
MwoI GCNNNNNNNGC 3 cut(s) 89, 135, 473
NciI CCSGG 1 cut(s) 981
NcoI CCATGG 2 cut(s) 322, 1047
NdeII GATC 6 cut(s) 277, 286, 489, 580, 586, 736
NlaIII CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 129
PagI TCATGA 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 3 cut(s) 163, 763, 903
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 960
PspEI GGTNACC 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 115
PstNI CAGNNNCTG 2 cut(s) 433, 971
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 420, 931
SacI GAGCTC 1 cut(s) 960
SaqAI TTAA 3 cut(s) 27, 330, 653
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 6 cut(s) 277, 286, 489, 580, 586, 736
ScrFI CCNGG 1 cut(s) 981
SduI GDGCHC 3 cut(s) 275, 960, 1042
SfaNI GCATC 2 cut(s) 463, 935
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 420, 931
Sse9I AATT 2 cut(s) 647, 750
SsiI CCGC 6 cut(s) 67, 98, 202, 208, 881, 1005
SspMI CTAG 5 cut(s) 39, 635, 719, 741, 1059
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 1 cut(s) 979
StyI CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
TaaI ACNGT 1 cut(s) 696
TaqI TCGA 1 cut(s) 906
TasI AATT 2 cut(s) 647, 750
TfiI GAWTC 3 cut(s) 163, 763, 903
Tru1I TTAA 3 cut(s) 27, 330, 653
Tru9I TTAA 3 cut(s) 27, 330, 653
TscAI CASTG 2 cut(s) 140, 649
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 8 cut(s) 67, 148, 423, 624, 659, 776, 827, 1062
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 140, 649
Van91I CCANNNNNTGG 1 cut(s) 681
XapI RAATTY 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 5 cut(s) 39, 635, 719, 741, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.