Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003712

Physical Location & Seq

Genomic Coordinates Reverse (-)

9432168 .. 9432806

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0120600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGGAGATCAAGCTACGACAACCCTGCCAGACACCAAACTGGCTCAGACTACTATTCTCATGTTAATAGGATGGCTAGAGCACCTAGTGTTCTGACCGACGTCCCTCACTATGGGCACACCCTATTCAGCAACAATCCAGTGCCTTCAAATGAAGCCCATCGCGGTGGTCACTATGTTCAGTACCAGCAGAGGCAGCACCACCAGCACAACCCTGAGCCTGGTAGGAATGTTGTTGAAGTGACTGAAACAGTGGCACAATGTGACAGGAATGGGAACTGCGTGGTTATTGAAGAAAAAGTTGATGTCGAAGCTGATGACTACATCCAGCAGAAGCACAAGGGGTTTGAGTTGTTCAAGTGGAAGACCTTCAAACCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

127

Amino Acids

14.8

Weight (kDa)

7.88

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17770 AT4G17770
fragaria_vesca	FvH4_5g22550 FvH4_5g22550 FvH4_5g22550 FvH4_5g22550 FvH4_5g22550 FvH4_5g22550
malus_domestica	MD06G1037500.v1.1
prunus_persica	Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1
pyrus_communis	pycom06g03100
rosa_chinensis	RchiOBHm_Chr7g0210321
rosa_laevigata	RLG00000003046
rosa_multiflora	Rmu_sc0004503.1_g000003 Rmu_sc0017069.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248400
rosa_rugosa	Rorug07G0120600 Rorug07G0120700 Rorug07G0120800 Rorug07G0120800 Rorug07G0120900 Rorug07G0121000 Rorug07G0121000 Rorug07G0121000
rosa_samantha	Rh7BG248600
rosa_wichuraiana	Rw7G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	102
AdeI	CACNNNGTG	2 cut(s)	89, 263
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	113, 221
AgsI	TTSAA	5 cut(s)	150, 239, 293, 358, 373
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	15, 314
AluI	AGCT	2 cut(s)	15, 314
Alw21I	GWGCWC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	67, 168
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	2 cut(s)	78, 87
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BoxI	GACNNNNGTC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 221
Bse1I	ACTGG	2 cut(s)	46, 140
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	78, 324
BseLI	CCNNNNNNNGG	2 cut(s)	113, 221
BseMII	CTCAG	2 cut(s)	60, 207
BseNI	ACTGG	2 cut(s)	46, 140
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	113, 221
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	85, 120
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	59, 208
BspFNI	CGCG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	46, 140
BssMI	GATC	1 cut(s)	8
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	46, 216
BstF5I	GGATG	2 cut(s)	78, 324
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 205
BstNI	CCWGG	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	371
BstXI	CCANNNNNNTGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	78, 324
BtsIMutI	CAGTG	2 cut(s)	147, 258
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	15, 45, 77, 158, 220, 314
CviKI_1	RGCY	6 cut(s)	15, 45, 77, 158, 220, 314
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	46, 216
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
DraIII	CACNNNGTG	2 cut(s)	89, 263
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 114, 177
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	85, 311
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	2 cut(s)	78, 87
GluI	GCNGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	49, 96
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	156, 379
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 205
HpyF3I	CTNAG	2 cut(s)	46, 216
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	8
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	78, 87
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	170, 241, 263
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	305, 376
MhlI	GDGCHC	2 cut(s)	85, 120
MnlI	CCTC	2 cut(s)	117, 186
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	196, 205
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	65
NmuCI	GTSAC	3 cut(s)	170, 241, 263
PdmI	GAANNNNTTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	198
PshAI	GACNNNNGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	85, 120
SetI	ASST	6 cut(s)	17, 88, 105, 316, 371, 379
SmiMI	CAYNNNNRTG	1 cut(s)	165
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	78, 87
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	309
TaqII	GACCGA	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	147, 258
TseFI	GTSAC	3 cut(s)	170, 241, 263
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	3 cut(s)	170, 241, 263
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	147, 258
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	78, 87
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.