Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003712

Physical Location & Seq

Genomic Coordinates Reverse (-)

9440278 .. 9444532

Gene Structure 4255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGGCCTCGTCTACTATGGTGATCAAGGTCAAATATGGGGATACACTGAGGCGTTTCAATGCTCGTGTTGATGAGAATGATCAACTGGATCTTGACTTGGGTGGACTGCGGTTCAAAATATATAGTCTCTTCAATTTTCAGCTTGATGCTGACATCACTATGACCTATATTGACGAAGATGGTGATATAGTGACTCTGGTTGATGACGAGGACTTGCGTGATGCTATGAGGCAGAATATGAAGTTCTTGAGGATTGATGTACATGAGAAAACTGACCAATCTGAGAAATCTTATACCAAATCAAGTGGAAGTTCTACCCCTGTAAGATATCCCTTGCCAGATATCACCCCTGAGCCTATCCGTGAACTAATCTCCAGGGTTCCTCGTGACTTGACTCCAAACGCCCTTGGTCCAGGGTTTGCGGATCTTGTTGACTGCTTTTCGAAGATGGGAATGTCCTATTTACTTCAGGCTGGTGGAGTTTCAGGCGTCAAGAATGATTCCTCTGAGAAACCCTTAGCTCCATCTGCCAATGATATGAAGCGCGATGGTAAGTCAGAAACCATCTTAAAGTCTACCACTGAGGAATCTAGCTCTAAAAACAGTCGGGCAAAGGATGCTGTAAATGTGACCAAGGATGTGGGAATGTCGAATCCACCTCAGAATACTCCAGTTGATCTCAATGTTCGTCCTGCTGATTCTAATCCATCCGGACCCACACCCATCAATGTTACACCAGTTGGAGCAAGTCTTCATACTGCTGAGGAGAGGAAGGAGTCAGAGAAGATTACCAGTGGTCAGGTCAAGGGCAAGCCTCTTGGTTGTGGTGGATCTACAAGTTCTGCTATCCCTGCATTGACTGTTAATGACATGAGCAATAATCATTTCAATCAATGTCCATTTTCAGAGACTCCTATTGTGAATGACTCGGCTCCTGTTGCATATCGTCGTCTTCATCCTTTTAAAAGGAATCATTCTGAAGCAATGGGTGGTATGTTCCACACTGGTATTCGCTGTGATGGATGTGGTTGTCATCCAATAATTGGACCCCGGTTCAAGTCCGTAGTGAAAGCAGATTATGACCTCTGCCGTATCTGTTTCTCGAGTATTGGTAATGTGGCCGAGTACATTAGAATTGACCACCCTTTGTCTTATCGCCATCCACGTCCTTTCAAGGGGATGCATGAACAACCTCCATGGATGGGTCCTTCAGCATTGCCAAAGATACTGAGAAATTGTAGCGCGAAGCCTGGGCGACCTAAGCTTGACAGCCGCTTCGTTTTGGATGTCAATGTAATGGATGGTACCTTAATGGCCCCATCTACTCCATTTACCAAGATTTGGCGGATGCGCAACAATGGGGGTTTGATCTGGCCTAAAGGAACACAACTCATGTGGATTGGTGGAGACAGGTTTAGCAAATCAGATTCAGTTGAGATAGAGATTCCTGCGCATGGTGTGTTGGCTGAAAATGAACTTGATATTGCTGTTGATTTTACTGCGCCTGAGTCACCTGGACGGTACATCTCATATTGGAGGATGGCTTCTCCATCTGGTCAGAAGTTTGGGCAACGTGTTTGGGTTCTGATTCAGGTGGATACTTCCCTCAAGGATTCATTCTTGGAGAGCTTTCAAGGTTTGAACCTGAACCTGCCCCCTGAAAACGTGGTTAACTTTCCTGAGCAAATGAACTTTCCTCAGCAACATGTGGGCAGTGACTTTGTCCAGCCTTCTAGCTCTAACTCAGTGAAGGAACCAGCAATTCCCATTCCTGAGAAGCAGCCTGAAAATGAGCAGGATCTCAACTTCCCTATAAATGATAGCTTGCTGGTTGGCCACAGTATTCCTGCCCCTACTGCCCCTACCGCCCCAGTGGCTTCTTCAACTGTGTCATACCCCACTGTCGACCAGAGTGCTCCAGCCCCTACTGCGCAAGTGGCCTCTTCAACTGTGACATACCCCACTGTTGATATATTTGAACCAGCCCCGCCCTCCCCCAGATCTTCCCCTGTTGTCACTCTACCAACATCATCTGAAGGGACCAGCTTAAAAAATCCTGTGGAGGACACCCTCCTTAAGGAGCTTGAGGAGATGGGATTTAAGCAGGTGAATTTGAACAAGGAAATTCTGCGAAGGAATGAGTACAACCTGGAGCAGTCTGTGGATGATCTCTGTGAGGTTGCTGAATGGGATCCTATTCTTGAAGAGCTGCAGGAAATGGGCTTCAGTGATACAGAGATGAACAAGAAGCTGCTTGCGAAGAACAATGGAAGCATCAAGCGTGTGGTCATGGATCTTATCAATAGGGACAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

772

Amino Acids

85.1

Weight (kDa)

5.31

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	6 - 89	9.7e-10	PB1 domain
ZZ	PF00569	334 - 369	9.3e-09	Zinc finger, ZZ type
N_BRCA1_IG	PF16158	431 - 532	8.5e-33	Ig-like domain from next to BRCA1 gene
UBA_NBR1_C	PF24932	688 - 727	1.3e-23	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain
UBA_NBR1_C	PF24932	730 - 767	4.3e-11	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17770 AT4G17770
fragaria_vesca	FvH4_5g22550 FvH4_5g22550 FvH4_5g22550 FvH4_5g22550 FvH4_5g22550 FvH4_5g22550
malus_domestica	MD06G1037500.v1.1
prunus_persica	Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1 Prupe.5G031500_v2.0.a1
pyrus_communis	pycom06g03100
rosa_chinensis	RchiOBHm_Chr7g0210321
rosa_laevigata	RLG00000003046
rosa_multiflora	Rmu_sc0004503.1_g000003 Rmu_sc0017069.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248400
rosa_rugosa	Rorug07G0120600 Rorug07G0120700 Rorug07G0120800 Rorug07G0120800 Rorug07G0120900 Rorug07G0121000 Rorug07G0121000 Rorug07G0121000
rosa_samantha	Rh7BG248600
rosa_wichuraiana	Rw7G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2095
Acc16I	TGCGCA	3 cut(s)	1352, 1452, 1932
Acc36I	ACCTGC	2 cut(s)	1659, 2095
Acc65I	GGTACC	1 cut(s)	1304
AccB1I	GGYRCC	1 cut(s)	1304
AccB7I	CCANNNNNTGG	2 cut(s)	1043, 1341
AccI	GTMKAC	3 cut(s)	11, 575, 1905
AccII	CGCG	2 cut(s)	546, 1244
AccIII	TCCGGA	1 cut(s)	710
AciI	CCGC	6 cut(s)	109, 422, 1273, 1345, 1866, 1988
AclWI	GGATC	7 cut(s)	96, 432, 838, 1806, 2186, 2199, 2301
AcoI	YGGCCR	2 cut(s)	1119, 1834
AcsI	RAATTY	2 cut(s)	2110, 2124
AcuI	CTGAAG	5 cut(s)	452, 999, 1194, 2055, 2209
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	5 cut(s)	261, 1127, 1306, 1523, 2144
AfiI	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2077
AflII	CTTAAG	1 cut(s)	2075
AflIII	ACRYGT	2 cut(s)	1573, 1705
AjiI	CACGTC	1 cut(s)	1166
AjnI	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2148
Alw21I	GWGCWC	1 cut(s)	1918
Alw26I	GTCTC	3 cut(s)	131, 902, 1401
AlwI	GGATC	7 cut(s)	96, 432, 838, 1806, 2186, 2199, 2301
Ama87I	CYCGRG	1 cut(s)	1102
Aor13HI	TCCGGA	1 cut(s)	710
AoxI	GGCC	6 cut(s)	3, 1119, 1314, 1373, 1834, 1938
ApeKI	GCWGC	3 cut(s)	1780, 2209, 2251
ApoI	RAATTY	2 cut(s)	2110, 2124
ArsI	GACNNNNNNTTYG	2 cut(s)	1259, 1291
Asp718I	GGTACC	1 cut(s)	1304
AspLEI	GCGC	6 cut(s)	546, 1244, 1353, 1453, 1504, 1933
AspS9I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2040
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	5 cut(s)	31, 194, 337, 1503, 2119
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	1102
AvaII	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2040
BalI	TGGCCA	1 cut(s)	1836
BamHI	GGATCC	1 cut(s)	2191
BanI	GGYRCC	1 cut(s)	1304
BauI	CACGAG	2 cut(s)	63, 384
BbsI	GAAGAC	2 cut(s)	743, 944
Bbv12I	GWGCWC	1 cut(s)	1918
BbvCI	CCTCAGC	2 cut(s)	762, 1698
BbvI	GCAGC	3 cut(s)	1792, 2196, 2238
BceAI	ACGGC	1 cut(s)	1074
BcgI	CGANNNNNNTGC	2 cut(s)	1895, 1929
BciT130I	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2150
BciVI	GTATCC	2 cut(s)	34, 1591
BclI	TGATCA	2 cut(s)	21, 79
BcnI	CCSGG	1 cut(s)	1051
BcoDI	GTCTC	3 cut(s)	131, 902, 1401
BfaI	CTAG	2 cut(s)	591, 1734
BfmI	CTRYAG	2 cut(s)	2210, 2315
BfrI	CTTAAG	1 cut(s)	2075
BfuAI	ACCTGC	2 cut(s)	1659, 2095
BfuI	GTATCC	2 cut(s)	34, 1591
BglI	GCCNNNNNGGC	1 cut(s)	1874
BglII	AGATCT	1 cut(s)	2000
BisI	GCNGC	4 cut(s)	1273, 1781, 2210, 2252
BlsI	GCNGC	4 cut(s)	1274, 1782, 2211, 2253
Bme1390I	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2150
Bme18I	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2040
BmeT110I	CYCGRG	1 cut(s)	1102
BmgBI	CACGTC	1 cut(s)	1166
BmgT120I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2040
BmrFI	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2150
BmrI	ACTGGG	1 cut(s)	1865
BmsI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2283
BmuI	ACTGGG	1 cut(s)	1865
BpiI	GAAGAC	2 cut(s)	743, 944
BpmI	CTGGAG	4 cut(s)	358, 654, 1902, 2171
Bpu10I	CCTNAGC	6 cut(s)	351, 517, 762, 1260, 1680, 1698
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	3 cut(s)	268, 1592, 2105
BpuMI	CCSGG	1 cut(s)	1051
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BsaWI	WCCGGW	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2077
Bse1I	ACTGG	6 cut(s)	90, 671, 737, 792, 1009, 1871
Bse3DI	GCAATG	2 cut(s)	990, 1214
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	710
BseBI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2150
BseDI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2077
BseMI	GCAATG	2 cut(s)	990, 1214
BseNI	ACTGG	6 cut(s)	90, 671, 737, 792, 1009, 1871
BseRI	GAGGAG	2 cut(s)	779, 2102
BseXI	GCAGC	3 cut(s)	1792, 2196, 2238
Bsh1236I	CGCG	2 cut(s)	546, 1244
BshFI	GGCC	6 cut(s)	5, 1121, 1316, 1375, 1836, 1940
BshNI	GGYRCC	1 cut(s)	1304
BsiHKAI	GWGCWC	1 cut(s)	1918
BsiHKCI	CYCGRG	1 cut(s)	1102
BsiSI	CCGG	2 cut(s)	711, 1051
BslFI	GGGAC	1 cut(s)	2053
BslI	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2077
BsmAI	GTCTC	3 cut(s)	131, 902, 1401
BsmFI	GGGAC	1 cut(s)	2053
BsnI	GGCC	6 cut(s)	5, 1121, 1316, 1375, 1836, 1940
BsoBI	CYCGRG	1 cut(s)	1102
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	1918
Bsp13I	TCCGGA	1 cut(s)	710
Bsp1407I	TGTACA	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	1196
BspACI	CCGC	6 cut(s)	109, 422, 1273, 1345, 1866, 1988
BspANI	GGCC	6 cut(s)	5, 1121, 1316, 1375, 1836, 1940
BspEI	TCCGGA	1 cut(s)	710
BspFNI	CGCG	2 cut(s)	546, 1244
BspMAI	CTGCAG	1 cut(s)	2214
BspMI	ACCTGC	2 cut(s)	1659, 2095
BspPI	GGATC	7 cut(s)	96, 432, 838, 1806, 2186, 2199, 2301
BspQI	GCTCTTC	1 cut(s)	2199
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	1304
BspTI	CTTAAG	1 cut(s)	2075
BsrDI	GCAATG	2 cut(s)	990, 1214
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	6 cut(s)	90, 671, 737, 792, 1009, 1871
BssECI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	2 cut(s)	63, 384
BssT1I	CCWWGG	3 cut(s)	406, 633, 1196
Bst2BI	CACGAG	2 cut(s)	63, 384
Bst2UI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2150
Bst4CI	ACNGT	8 cut(s)	605, 862, 1521, 1841, 1888, 1903, 1951, 1966
Bst6I	CTCTTC	3 cut(s)	134, 1948, 2199
BstACI	GRCGYC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	2075
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	812, 1826, 2256
BstDSI	CCRYGG	1 cut(s)	1196
BstENI	CCTNNNNNAGG	1 cut(s)	2075
BstFNI	CGCG	2 cut(s)	546, 1244
BstHHI	GCGC	6 cut(s)	546, 1244, 1353, 1453, 1504, 1933
BstMAI	GTCTC	3 cut(s)	131, 902, 1401
BstNI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2150
BstNSI	RCATGY	1 cut(s)	1709
BstSCI	CCNGG	6 cut(s)	374, 412, 1049, 1249, 1513, 2148
BstSFI	CTRYAG	2 cut(s)	2210, 2315
BstUI	CGCG	2 cut(s)	546, 1244
BstV1I	GCAGC	3 cut(s)	1792, 2196, 2238
BstV2I	GAAGAC	2 cut(s)	743, 944
BstX2I	RGATCY	7 cut(s)	88, 424, 830, 1798, 2000, 2191, 2293
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	7 cut(s)	88, 424, 830, 1798, 2000, 2191, 2293
BsuI	GTATCC	2 cut(s)	34, 1591
BsuRI	GGCC	6 cut(s)	5, 1121, 1316, 1375, 1836, 1940
BtgI	CCRYGG	1 cut(s)	1196
BtgZI	GCGATG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	1166
BtsI	GCAGTG	1 cut(s)	1720
BveI	ACCTGC	2 cut(s)	1659, 2095
Cac8I	GCNNGC	3 cut(s)	812, 1826, 2256
CfoI	GCGC	6 cut(s)	546, 1244, 1353, 1453, 1504, 1933
Cfr13I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2040
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	5 cut(s)	260, 1126, 1305, 1522, 2143
CspCI	CAANNNNNGTGG	4 cut(s)	286, 321, 1376, 1411
CviAII	CATG	8 cut(s)	263, 871, 1184, 1197, 1393, 1454, 1706, 2290
CviQI	GTAC	5 cut(s)	260, 1126, 1305, 1522, 2143
DraI	TTTAAA	1 cut(s)	964
EaeI	YGGCCR	2 cut(s)	1119, 1834
Eam1104I	CTCTTC	3 cut(s)	134, 1948, 2199
EarI	CTCTTC	3 cut(s)	134, 1948, 2199
EciI	GGCGGA	1 cut(s)	1360
Eco130I	CCWWGG	3 cut(s)	406, 633, 1196
Eco32I	GATATC	2 cut(s)	329, 343
Eco47I	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2040
Eco57I	CTGAAG	5 cut(s)	452, 999, 1194, 2055, 2209
Eco88I	CYCGRG	1 cut(s)	1102
EcoNI	CCTNNNNNAGG	1 cut(s)	2075
EcoO109I	RGGNCCY	1 cut(s)	1205
EcoRII	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2148
EcoRV	GATATC	2 cut(s)	329, 343
EcoT14I	CCWWGG	3 cut(s)	406, 633, 1196
EcoT22I	ATGCAT	1 cut(s)	1185
ErhI	CCWWGG	3 cut(s)	406, 633, 1196
FaeI	CATG	8 cut(s)	266, 874, 1187, 1200, 1396, 1457, 1709, 2293
FaqI	GGGAC	1 cut(s)	2053
FatI	CATG	8 cut(s)	262, 870, 1183, 1196, 1392, 1453, 1705, 2289
FauI	CCCGC	1 cut(s)	1995
FbaI	TGATCA	2 cut(s)	21, 79
FblI	GTMKAC	3 cut(s)	11, 575, 1905
Fnu4HI	GCNGC	4 cut(s)	1273, 1781, 2210, 2252
Fsp4HI	GCNGC	4 cut(s)	1273, 1781, 2210, 2252
FspBI	CTAG	2 cut(s)	591, 1734
FspI	TGCGCA	3 cut(s)	1352, 1452, 1932
GlaI	GCGC	6 cut(s)	545, 1243, 1352, 1452, 1503, 1932
GluI	GCNGC	4 cut(s)	1273, 1781, 2210, 2252
GsuI	CTGGAG	4 cut(s)	358, 654, 1902, 2171
HaeIII	GGCC	6 cut(s)	5, 1121, 1316, 1375, 1836, 1940
HapII	CCGG	2 cut(s)	711, 1051
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	6 cut(s)	546, 1244, 1353, 1453, 1504, 1933
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	8 cut(s)	266, 874, 1187, 1200, 1396, 1457, 1709, 2293
Hin6I	GCGC	6 cut(s)	544, 1242, 1351, 1451, 1502, 1931
HinP1I	GCGC	6 cut(s)	544, 1242, 1351, 1451, 1502, 1931
HincII	GTYRAC	3 cut(s)	433, 1672, 1906
HindII	GTYRAC	3 cut(s)	433, 1672, 1906
HindIII	AAGCTT	1 cut(s)	1262
HpaI	GTTAAC	1 cut(s)	1672
HpaII	CCGG	2 cut(s)	711, 1051
HphI	GGTGA	5 cut(s)	31, 194, 337, 1503, 2119
Hpy166II	GTNNAC	7 cut(s)	12, 104, 365, 433, 576, 1672, 1906
Hpy188III	TCNNGA	9 cut(s)	92, 247, 386, 493, 711, 1102, 1679, 1772, 2201
Hpy8I	GTNNAC	7 cut(s)	12, 104, 365, 433, 576, 1672, 1906
Hpy99I	CGWCG	1 cut(s)	951
HpyAV	CCTTC	6 cut(s)	766, 1218, 1740, 1744, 2030, 2127
HpyCH4III	ACNGT	8 cut(s)	605, 862, 1521, 1841, 1888, 1903, 1951, 1966
HpyCH4IV	ACGT	3 cut(s)	1165, 1573, 1665
HpyCH4V	TGCA	4 cut(s)	854, 941, 1183, 2212
HpySE526I	ACGT	3 cut(s)	1165, 1573, 1665
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	8 cut(s)	266, 874, 1187, 1200, 1396, 1457, 1709, 2293
HspAI	GCGC	6 cut(s)	544, 1242, 1351, 1451, 1502, 1931
Kpn2I	TCCGGA	1 cut(s)	710
KpnI	GGTACC	1 cut(s)	1308
Ksp22I	TGATCA	2 cut(s)	21, 79
KspAI	GTTAAC	1 cut(s)	1672
LguI	GCTCTTC	1 cut(s)	2199
LmnI	GCTCC	6 cut(s)	526, 743, 937, 1921, 2080, 2152
Lsp1109I	GCAGC	3 cut(s)	1792, 2196, 2238
LweI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2283
MaeI	CTAG	2 cut(s)	591, 1734
MaeII	ACGT	3 cut(s)	1165, 1573, 1665
MaeIII	GTNAC	8 cut(s)	190, 386, 628, 730, 1509, 1715, 1951, 2014
MflI	RGATCY	7 cut(s)	88, 424, 830, 1798, 2000, 2191, 2293
MhlI	GDGCHC	1 cut(s)	1918
MlsI	TGGCCA	1 cut(s)	1836
MluCI	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2110, 2124
MluNI	TGGCCA	1 cut(s)	1836
MlyI	GAGTC	6 cut(s)	187, 388, 785, 904, 920, 1517
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	1 cut(s)	1836
Mph1103I	ATGCAT	1 cut(s)	1185
MroI	TCCGGA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	1836
MseI	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2048, 2076, 2100
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	1836
MspCI	CTTAAG	1 cut(s)	2075
MspI	CCGG	2 cut(s)	711, 1051
MspR9I	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2150
MvaI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2150
MvnI	CGCG	2 cut(s)	546, 1244
NciI	CCSGG	1 cut(s)	1051
NcoI	CCATGG	1 cut(s)	1196
NlaIII	CATG	8 cut(s)	266, 874, 1187, 1200, 1396, 1457, 1709, 2293
NmeAIII	GCCGAG	2 cut(s)	908, 1147
NmuCI	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1951, 2014
NsbI	TGCGCA	3 cut(s)	1352, 1452, 1932
NsiI	ATGCAT	1 cut(s)	1185
NspI	RCATGY	1 cut(s)	1709
NspV	TTCGAA	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	1102
PaqCI	CACCTGC	1 cut(s)	2095
PciI	ACATGT	1 cut(s)	1705
PciSI	GCTCTTC	1 cut(s)	2199
PcsI	WCGNNNNNNNCGW	1 cut(s)	1162
PfeI	GAWTC	9 cut(s)	500, 587, 652, 698, 970, 1427, 1444, 1588, 1613
PflFI	GACNNNGTC	1 cut(s)	1721
PflMI	CCANNNNNTGG	2 cut(s)	1043, 1341
PkrI	GCNGC	4 cut(s)	1274, 1782, 2211, 2253
PleI	GAGTC	6 cut(s)	187, 388, 784, 904, 920, 1516
PpsI	GAGTC	6 cut(s)	187, 388, 784, 904, 920, 1516
PpuMI	RGGWCCY	1 cut(s)	1205
PscI	ACATGT	1 cut(s)	1705
Psp5II	RGGWCCY	1 cut(s)	1205
Psp6I	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2148
PspGI	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2148
PspPI	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2040
PspPPI	RGGWCCY	1 cut(s)	1205
PstI	CTGCAG	1 cut(s)	2214
PsuI	RGATCY	7 cut(s)	88, 424, 830, 1798, 2000, 2191, 2293
PsyI	GACNNNGTC	1 cut(s)	1721
RsaI	GTAC	5 cut(s)	261, 1127, 1306, 1523, 2144
RsaNI	GTAC	5 cut(s)	260, 1126, 1305, 1522, 2143
RseI	CAYNNNNRTG	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	1904
SapI	GCTCTTC	1 cut(s)	2199
SaqAI	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2048, 2076, 2100
SatI	GCNGC	4 cut(s)	1273, 1781, 2210, 2252
Sau96I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2040
SchI	GAGTC	6 cut(s)	187, 388, 785, 904, 920, 1517
ScrFI	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2150
SduI	GDGCHC	1 cut(s)	1918
SfaNI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2283
SfcI	CTRYAG	2 cut(s)	2210, 2315
Sfr274I	CTCGAG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2040
SlaI	CTCGAG	1 cut(s)	1102
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	5 cut(s)	247, 1102, 1607, 2075, 2084
SmoI	CTYRAG	5 cut(s)	247, 1102, 1607, 2075, 2084
Sse9I	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2110, 2124
SsiI	CCGC	6 cut(s)	109, 422, 1273, 1345, 1866, 1988
SspMI	CTAG	2 cut(s)	591, 1734
StyD4I	CCNGG	6 cut(s)	374, 412, 1049, 1249, 1513, 2148
StyI	CCWWGG	3 cut(s)	406, 633, 1196
TaaI	ACNGT	8 cut(s)	605, 862, 1521, 1841, 1888, 1903, 1951, 1966
TaiI	ACGT	3 cut(s)	1168, 1576, 1668
TaqI	TCGA	4 cut(s)	443, 650, 1103, 1905
TasI	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2110, 2124
TatI	WGTACW	3 cut(s)	259, 1125, 2142
TauI	GCSGC	1 cut(s)	1275
TfiI	GAWTC	9 cut(s)	500, 587, 652, 698, 970, 1427, 1444, 1588, 1613
Tru1I	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2048, 2076, 2100
Tru9I	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2048, 2076, 2100
TseFI	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1951, 2014
TseI	GCWGC	3 cut(s)	1780, 2209, 2251
Tsp45I	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1951, 2014
TspDTI	ATGAA	9 cut(s)	254, 554, 743, 944, 1200, 1488, 1605, 1703, 2255
TspGWI	ACGGA	2 cut(s)	350, 1051
Tth111I	GACNNNGTC	1 cut(s)	1721
Van91I	CCANNNNNTGG	2 cut(s)	1043, 1341
Vha464I	CTTAAG	1 cut(s)	2075
VpaK11BI	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2040
XagI	CCTNNNNNAGG	1 cut(s)	2075
XapI	RAATTY	2 cut(s)	2110, 2124
XceI	RCATGY	1 cut(s)	1709
XhoI	CTCGAG	1 cut(s)	1102
XmiI	GTMKAC	3 cut(s)	11, 575, 1905
XspI	CTAG	2 cut(s)	591, 1734
Zsp2I	ATGCAT	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.