Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002175

Physical Location & Seq

Genomic Coordinates Forward (+)

10467786 .. 10471005

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0133000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATTCAGAAGCTTTAAGAAAGAGAGTATTTTATGGGGGAGTTGAGCACAAATTACGGAAAGAGGTCTGGCCATTCTTGCTGGGACACTATGCATATGATTCAACATATACAGAGAGGGAGTATGTTAAGGCAATGAAGAAAGCAGAGTTTGAGACACTAAAGAAGCAATGGCAGAGTATCTCGGCTATCTCCCCAGAGCAGCGCATTATTGACAAAGATGTGGTGAGGACCGACAGATGTCTCTCCTTCTCCAATGGGGATGATAATCCAAATGTGAATCTGTTGCATAACATATTGTTAACATACTCGTTTTACAACTTGGATCTTGGTTACTGTCAGGGTATGAATGGGGACAGAAGCTCAATATTGTTTGTACTGGGGGATGAGTCAGAATCATTTTGGTGTTTTGTTAAACTGATGGAGCGCCTTGGCCCCAATTTTGACCGTGAACATAAAGGCATGGACTCTCAACTTCTTGCTTTAAGGAAGTTGGTGGAGTTGTTAGATAGACCATTGCATAATTACTTTACACTGCAGCGTAACTGCTTGGAATACCACTTTTGTTTCCGCTGGGTTCTGTTACAGTTCAAAAGGGAATTTGAATTCGACAAGACATTGAGATTATGGGAGGCTCTGTGGACACATTATCCATCTGAGCACCTGCACTTGTATGTGTGTGTTGCGATACTCAAGCGATACCGTGGTAAGATCATTGGGGAGCAGATGTATAAAGACACTCTAATCAAATTCATCAATGAACTGAGTGGTCAAATAAATCTTGATGGCCTTGTGAGGGATGCAGAAGCTCTGTTCATATGTGCTGGTGAGAAGGGTGATGCTTGCATTCCACCTGGAACAACCCTCACTGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009898 GO:0009987 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

292

Amino Acids

34.28

Weight (kDa)

6.51

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	17 - 238	5.1e-44	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	96 - 254	2.3e-11	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31930 AT1G31930 AT1G31930 AT1G31930 AT1G31930 AT1G31930
fragaria_vesca	FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320
malus_domestica	MD06G1025000.v1.1
prunus_persica	Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1
pyrus_communis	pycom06g02030
rosa_chinensis	RchiOBHm_Chr7g0212271
rosa_laevigata	RLG00000002900
rosa_multiflora	Rmu_sc0001911.1_g000047
rosa_roxburghii	Rroxscaffold_3G00246940
rosa_rugosa	Rorug07G0133000 Rorug07G0133100 Rorug07G0133200 Rorug07G0133200
rosa_samantha	Rh7AG265800 Rh7BG260000
rosa_wichuraiana	Rw7G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	672
Acc36I	ACCTGC	1 cut(s)	672
AciI	CCGC	1 cut(s)	571
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	3 cut(s)	599, 605, 749
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	796
AgsI	TTSAA	3 cut(s)	105, 592, 605
AjnI	CCWGG	1 cut(s)	853
AluBI	AGCT	3 cut(s)	14, 363, 809
AluI	AGCT	3 cut(s)	14, 363, 809
Alw21I	GWGCWC	2 cut(s)	51, 663
Alw26I	GTCTC	2 cut(s)	149, 248
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	3 cut(s)	71, 433, 787
ApeKI	GCWGC	2 cut(s)	202, 538
ApoI	RAATTY	3 cut(s)	599, 605, 749
AspLEI	GCGC	2 cut(s)	207, 429
AspS9I	GGNCC	2 cut(s)	231, 434
AsuHPI	GGTGA	3 cut(s)	238, 839, 848
AvaII	GGWCC	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	691, 724
BalI	TGGCCA	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	51, 663
BbvI	GCAGC	2 cut(s)	214, 550
BccI	CCATC	3 cut(s)	415, 661, 779
BciT130I	CCWGG	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	149, 248
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	672
BisI	GCNGC	2 cut(s)	203, 539
BlsI	GCNGC	2 cut(s)	204, 540
Bme1390I	CCNGG	1 cut(s)	855
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	231, 434
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	855
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	790, 829
BmuI	ACTGGG	1 cut(s)	389
BoxI	GACNNNNGTC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	430, 703
BsaXI	ACNNNNNCTCC	4 cut(s)	623, 653, 713, 743
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	141, 176, 515
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	2 cut(s)	430, 703
BseGI	GGATG	3 cut(s)	268, 391, 805
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseMI	GCAATG	3 cut(s)	141, 176, 515
BseMII	CTCAG	2 cut(s)	648, 755
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	214, 550
BseYI	CCCAGC	2 cut(s)	82, 573
BsgI	GTGCAG	1 cut(s)	650
BshFI	GGCC	3 cut(s)	73, 435, 789
BsiHKAI	GWGCWC	2 cut(s)	51, 663
BslFI	GGGAC	2 cut(s)	99, 368
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmAI	GTCTC	2 cut(s)	149, 248
BsmFI	GGGAC	2 cut(s)	99, 368
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	3 cut(s)	73, 435, 789
Bsp1286I	GDGCHC	2 cut(s)	51, 663
Bsp143I	GATC	2 cut(s)	325, 711
BspACI	CCGC	1 cut(s)	571
BspANI	GGCC	3 cut(s)	73, 435, 789
BspCNI	CTCAG	2 cut(s)	649, 756
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	672
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	3 cut(s)	141, 176, 515
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	430, 703
BssMI	GATC	2 cut(s)	325, 711
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	4 cut(s)	338, 449, 588, 704
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	657, 764
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	3 cut(s)	268, 391, 805
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	207, 429
BstKTI	GATC	2 cut(s)	328, 714
BstMAI	GTCTC	2 cut(s)	149, 248
BstMBI	GATC	2 cut(s)	325, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	855
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	853
BstSFI	CTRYAG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	214, 550
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	73, 435, 789
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	268, 391, 805
BtsI	GCAGTG	2 cut(s)	533, 867
BtsIMutI	CAGTG	2 cut(s)	533, 867
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	844
CfoI	GCGC	2 cut(s)	207, 429
Cfr13I	GGNCC	2 cut(s)	231, 434
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	8 cut(s)	14, 73, 188, 363, 435, 635, 789, 809
CviKI_1	RGCY	8 cut(s)	14, 73, 188, 363, 435, 635, 789, 809
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	657, 764
DpnI	GATC	2 cut(s)	327, 713
DpnII	GATC	2 cut(s)	325, 711
EaeI	YGGCCR	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	466
FaqI	GGGAC	2 cut(s)	99, 368
FatI	CATG	1 cut(s)	462
FauNDI	CATATG	2 cut(s)	97, 818
Fnu4HI	GCNGC	2 cut(s)	203, 539
FokI	GGATG	3 cut(s)	275, 398, 812
Fsp4HI	GCNGC	2 cut(s)	203, 539
GlaI	GCGC	2 cut(s)	206, 428
GluI	GCNGC	2 cut(s)	203, 539
GsaI	CCCAGC	2 cut(s)	86, 577
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	73, 435, 789
HhaI	GCGC	2 cut(s)	207, 429
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	2 cut(s)	205, 427
HinP1I	GCGC	2 cut(s)	205, 427
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	6 cut(s)	5, 101, 280, 389, 395, 467
HpaI	GTTAAC	1 cut(s)	303
HphI	GGTGA	3 cut(s)	238, 839, 848
Hpy166II	GTNNAC	3 cut(s)	303, 452, 642
Hpy188I	TCNGA	3 cut(s)	10, 394, 658
Hpy188III	TCNNGA	1 cut(s)	782
Hpy8I	GTNNAC	3 cut(s)	303, 452, 642
HpyAV	CCTTC	2 cut(s)	259, 826
HpyCH4III	ACNGT	4 cut(s)	338, 449, 588, 704
HpyCH4V	TGCA	7 cut(s)	95, 289, 520, 538, 667, 803, 846
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	657, 764
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	2 cut(s)	205, 427
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	325, 711
LmnI	GCTCC	2 cut(s)	424, 721
Lsp1109I	GCAGC	2 cut(s)	214, 550
LweI	GCATC	2 cut(s)	790, 829
MaeIII	GTNAC	3 cut(s)	332, 542, 582
MalI	GATC	2 cut(s)	327, 713
MboI	GATC	2 cut(s)	325, 711
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	51, 663
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	6 cut(s)	53, 439, 523, 599, 605, 749
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	398, 461
MnlI	CCTC	6 cut(s)	58, 111, 222, 625, 789, 875
Mox20I	TGGCCA	1 cut(s)	73
Mph1103I	ATGCAT	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	5 cut(s)	17, 129, 302, 414, 485
MslI	CAYNNNNRTG	2 cut(s)	403, 672
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeI	CATATG	2 cut(s)	97, 818
NdeII	GATC	2 cut(s)	325, 711
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	4 cut(s)	5, 101, 280, 395
PkrI	GCNGC	2 cut(s)	204, 540
PleI	GAGTC	2 cut(s)	397, 461
PpsI	GAGTC	2 cut(s)	397, 461
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	853
PspFI	CCCAGC	2 cut(s)	82, 573
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	231, 434
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	403, 672
SaqAI	TTAA	5 cut(s)	17, 129, 302, 414, 485
SatI	GCNGC	2 cut(s)	203, 539
Sau3AI	GATC	2 cut(s)	325, 711
Sau96I	GGNCC	2 cut(s)	231, 434
SchI	GAGTC	2 cut(s)	398, 461
ScrFI	CCNGG	1 cut(s)	855
SduI	GDGCHC	2 cut(s)	51, 663
SetI	ASST	6 cut(s)	16, 69, 365, 666, 811, 856
SfaNI	GCATC	2 cut(s)	790, 829
SfcI	CTRYAG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	403, 672
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	6 cut(s)	53, 439, 523, 599, 605, 749
SsiI	CCGC	1 cut(s)	571
SspI	AATATT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	338, 449, 588, 704
TaqI	TCGA	1 cut(s)	609
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	6 cut(s)	53, 439, 523, 599, 605, 749
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	4 cut(s)	5, 101, 280, 395
Tru1I	TTAA	5 cut(s)	17, 129, 302, 414, 485
Tru9I	TTAA	5 cut(s)	17, 129, 302, 414, 485
TscAI	CASTG	2 cut(s)	540, 874
TseI	GCWGC	2 cut(s)	202, 538
TspDTI	ATGAA	5 cut(s)	152, 362, 742, 774, 805
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	540, 874
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	3 cut(s)	599, 605, 749
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.