Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002175

Physical Location & Seq

Genomic Coordinates Forward (+)

10473413 .. 10476143

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGACTTATCTGCCATTTGCAGGGATGGTAATGGTGGAGTGTTTGGATGTGGGAATGACCACACTAAGCAAAGCGGCCATGTCCAGAGGAATGAGTCACTTTGTTTTTGTTGTCTACTCAAATGCTCTTGCCACTCTCATCCTCCTCCCTTCTTCTTTCATAATCCACAGAAATAAGAGACCCCCATTGACCTTCTCCATTCTCTGTAAATTCTTCCTTCTTAGCCTTGCTGGGATAACTATTATGCAGAACTGTGTGTTCACTGGAGTAAACTACAGCTCTCCCACTCTTGCCTCTGCAATGAGCAATTTGGTCCCAGCTTTCACTTTCTTCCTTGCTGTTATCTTCAGAATGGAAAAGTTAGATTTGAGGAACTCAATGAGCCAGATCAAAATCATGGGCACCCTGGTATCTATATCAGGAGCATTGATTGTCACTCTCTACAAGGGTGCTCCACTTTTAGGCACACCAGTTCAATCAATTCCTGACTCTTCTCCCTCGAACACCTCTTCGTCGACATCAATGAATAATTGGATCATTGGAGGCCTTTTTCTTGCAACAGCTTCTTCATGTCTTGCAATATGGAATACTGCTCAGGCTGCCATTCTTAAAGGATACCCATCAGAGATGACCATAGTATCCTTCTATTCCTTATTTGGAACCATTCAGTGTACAATACTTTCCTTGTTTGTTGAAAGGAATCCAAGTGCCTGGACACTGAGGCCTGACATTGAGCTTGCCTCTATCTTCTATTCAGCTATTTGTGGAGGTGTTGTAACATTCTCTGTGCAAACATGGTGCATAAAAAAGAAAGGACCTGTCTTTGTGGCTATGTTCAAGCCTTTGGGGATTGCCATTGCTGCTTTGCTGGGTGCTATCTTTCTAGGGGAAGAACTCCATGTTGGAAGCCTTATTGGAGCAGTGGTAATTGTTGTGGGATTTTACGGAGTAATCTGGGCGCAATCAAAAGAGGAAAAAGGTTTGGATATAAAAACAAAGGAAGATAGTGAATCCCAGGAGGATGATGAGATTGATAGGCTGCAGTCGTCATCTCAGAAGAAGCCTCTATTGGAGAGCGAAGTACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009898 GO:0009987 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

364

Amino Acids

39.48

Weight (kDa)

6.89

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 147	4.5e-12	EamA-like transporter family
EamA	PF00892	181 - 319	3.8e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31930 AT1G31930 AT1G31930 AT1G31930 AT1G31930 AT1G31930
fragaria_vesca	FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320 FvH4_5g23320
malus_domestica	MD06G1025000.v1.1
prunus_persica	Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1 Prupe.5G026100_v2.0.a1
pyrus_communis	pycom06g02030
rosa_chinensis	RchiOBHm_Chr7g0212271
rosa_laevigata	RLG00000002900
rosa_multiflora	Rmu_sc0001911.1_g000047
rosa_roxburghii	Rroxscaffold_3G00246940
rosa_rugosa	Rorug07G0133000 Rorug07G0133100 Rorug07G0133200 Rorug07G0133200
rosa_samantha	Rh7AG265800 Rh7BG260000
rosa_wichuraiana	Rw7G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	2 cut(s)	117, 518
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	676, 1086
AfiI	CCNNNNNNNGG	2 cut(s)	23, 464
AflIII	ACRYGT	1 cut(s)	1087
AgsI	TTSAA	3 cut(s)	479, 698, 841
AjnI	CCWGG	3 cut(s)	408, 713, 1017
AjuI	GAANNNNNNNTTGG	4 cut(s)	888, 920, 1055, 1087
AluBI	AGCT	5 cut(s)	282, 323, 566, 739, 761
AluI	AGCT	5 cut(s)	282, 323, 566, 739, 761
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	78, 547, 725
ApeKI	GCWGC	3 cut(s)	602, 863, 1042
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	316, 818
AvaII	GGWCC	2 cut(s)	316, 818
BaeGI	GKGCMC	1 cut(s)	407
BaeI	ACNNNNGTAYC	4 cut(s)	396, 429, 624, 657
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	589, 850, 1029
BccI	CCATC	2 cut(s)	22, 631
BciT130I	CCWGG	3 cut(s)	410, 715, 1019
BciVI	GTATCC	2 cut(s)	611, 652
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	2 cut(s)	277, 1043
BfuI	GTATCC	2 cut(s)	611, 652
BisI	GCNGC	4 cut(s)	78, 603, 864, 1043
BlsI	GCNGC	4 cut(s)	79, 604, 865, 1044
Bme1390I	CCNGG	3 cut(s)	410, 715, 1019
Bme18I	GGWCC	2 cut(s)	316, 818
BmgT120I	GGNCC	2 cut(s)	316, 818
BmiI	GGNNCC	3 cut(s)	318, 406, 664
BmrFI	CCNGG	3 cut(s)	410, 715, 1019
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	597
BsaBI	GATNNNNATC	2 cut(s)	395, 622
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	408, 1017
BsaXI	ACNNNNNCTCC	4 cut(s)	762, 792, 912, 942
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 464
Bse1I	ACTGG	2 cut(s)	271, 473
Bse3DI	GCAATG	2 cut(s)	309, 858
Bse8I	GATNNNNATC	2 cut(s)	395, 622
BseBI	CCWGG	3 cut(s)	410, 715, 1019
BseDI	CCNNGG	2 cut(s)	408, 1017
BseGI	GGATG	4 cut(s)	33, 55, 141, 1030
BseJI	GATNNNNATC	2 cut(s)	395, 622
BseLI	CCNNNNNNNGG	2 cut(s)	23, 464
BseMI	GCAATG	2 cut(s)	309, 858
BseMII	CTCAG	3 cut(s)	611, 713, 1070
BseNI	ACTGG	2 cut(s)	271, 473
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	589, 850, 1029
BseYI	CCCAGC	3 cut(s)	233, 319, 871
BshFI	GGCC	3 cut(s)	80, 549, 727
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	23, 464
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	80, 549, 727
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	407, 457
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	2 cut(s)	390, 537
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	80, 549, 727
BspCNI	CTCAG	3 cut(s)	610, 714, 1069
BspLI	GGNNCC	3 cut(s)	318, 406, 664
BspMAI	CTGCAG	1 cut(s)	1047
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	309, 858
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	271, 473
BssECI	CCNNGG	2 cut(s)	408, 1017
BssMI	GATC	2 cut(s)	390, 537
Bst2UI	CCWGG	3 cut(s)	410, 715, 1019
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	499, 517
BstAUI	TGTACA	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	5 cut(s)	68, 224, 597, 722, 1056
BstF5I	GGATG	4 cut(s)	33, 55, 141, 1030
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	2 cut(s)	393, 540
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	390, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 863
BstNI	CCWGG	3 cut(s)	410, 715, 1019
BstNSI	RCATGY	1 cut(s)	1091
BstSCI	CCNGG	3 cut(s)	408, 713, 1017
BstSFI	CTRYAG	2 cut(s)	277, 1043
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	589, 850, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	714
BsuI	GTATCC	2 cut(s)	611, 652
BsuRI	GGCC	3 cut(s)	80, 549, 727
BtsCI	GGATG	4 cut(s)	33, 55, 141, 1030
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	4 cut(s)	264, 677, 719, 930
Cac8I	GCNNGC	1 cut(s)	741
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	2 cut(s)	316, 818
Csp6I	GTAC	2 cut(s)	675, 1085
CviAII	CATG	6 cut(s)	82, 400, 573, 798, 902, 1088
CviQI	GTAC	2 cut(s)	675, 1085
DdeI	CTNAG	5 cut(s)	68, 224, 597, 722, 1056
DpnI	GATC	2 cut(s)	392, 539
DpnII	GATC	2 cut(s)	390, 537
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	499, 517
EarI	CTCTTC	2 cut(s)	499, 517
Eco147I	AGGCCT	2 cut(s)	549, 727
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	316, 818
Eco57I	CTGAAG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	3 cut(s)	408, 713, 1017
FaeI	CATG	6 cut(s)	85, 403, 576, 801, 905, 1091
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	6 cut(s)	81, 399, 572, 797, 901, 1087
FblI	GTMKAC	2 cut(s)	117, 518
Fnu4HI	GCNGC	4 cut(s)	78, 603, 864, 1043
FokI	GGATG	4 cut(s)	40, 62, 128, 1037
Fsp4HI	GCNGC	4 cut(s)	78, 603, 864, 1043
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	4 cut(s)	78, 603, 864, 1043
GsaI	CCCAGC	3 cut(s)	237, 323, 875
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	80, 549, 727
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	6 cut(s)	85, 403, 576, 801, 905, 1091
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	97, 491, 703, 1013
Hpy166II	GTNNAC	5 cut(s)	118, 264, 274, 519, 675
Hpy188I	TCNGA	3 cut(s)	353, 628, 1059
Hpy188III	TCNNGA	3 cut(s)	87, 423, 488
Hpy8I	GTNNAC	5 cut(s)	118, 264, 274, 519, 675
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	4 cut(s)	162, 205, 230, 655
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	8 cut(s)	23, 250, 302, 560, 581, 793, 804, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 863
HpyF3I	CTNAG	5 cut(s)	68, 224, 597, 722, 1056
Hsp92II	CATG	6 cut(s)	85, 403, 576, 801, 905, 1091
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	2 cut(s)	390, 537
LmnI	GCTCC	3 cut(s)	425, 460, 920
Lsp1109I	GCAGC	3 cut(s)	589, 850, 1029
MaeI	CTAG	1 cut(s)	887
MaeIII	GTNAC	3 cut(s)	98, 436, 778
MalI	GATC	2 cut(s)	392, 539
MboI	GATC	2 cut(s)	390, 537
MhlI	GDGCHC	2 cut(s)	407, 457
MluCI	AATT	5 cut(s)	212, 310, 483, 532, 930
MlyI	GAGTC	2 cut(s)	106, 485
MmeI	TCCRAC	1 cut(s)	886
MseI	TTAA	2 cut(s)	612, 1093
MspR9I	CCNGG	3 cut(s)	410, 715, 1019
MvaI	CCWGG	3 cut(s)	410, 715, 1019
MwoI	GCNNNNNNNGC	2 cut(s)	602, 863
NdeII	GATC	2 cut(s)	390, 537
NlaIII	CATG	6 cut(s)	85, 403, 576, 801, 905, 1091
NlaIV	GGNNCC	3 cut(s)	318, 406, 664
NmuCI	GTSAC	2 cut(s)	98, 436
NspI	RCATGY	1 cut(s)	1091
PceI	AGGCCT	2 cut(s)	549, 727
PciI	ACATGT	1 cut(s)	1087
PfeI	GAWTC	2 cut(s)	703, 1013
PkrI	GCNGC	4 cut(s)	79, 604, 865, 1044
PleI	GAGTC	2 cut(s)	105, 485
PpsI	GAGTC	2 cut(s)	105, 485
PpuMI	RGGWCCY	1 cut(s)	818
PscI	ACATGT	1 cut(s)	1087
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	408, 713, 1017
PspFI	CCCAGC	3 cut(s)	233, 319, 871
PspGI	CCWGG	3 cut(s)	408, 713, 1017
PspN4I	GGNNCC	3 cut(s)	318, 406, 664
PspPI	GGNCC	2 cut(s)	316, 818
PspPPI	RGGWCCY	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	1047
RsaI	GTAC	2 cut(s)	676, 1086
RsaNI	GTAC	2 cut(s)	675, 1085
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	612, 1093
SatI	GCNGC	4 cut(s)	78, 603, 864, 1043
Sau3AI	GATC	2 cut(s)	390, 537
Sau96I	GGNCC	2 cut(s)	316, 818
SchI	GAGTC	2 cut(s)	106, 485
ScrFI	CCNGG	3 cut(s)	410, 715, 1019
SduI	GDGCHC	2 cut(s)	407, 457
SfcI	CTRYAG	2 cut(s)	277, 1043
SinI	GGWCC	2 cut(s)	316, 818
Sse9I	AATT	5 cut(s)	212, 310, 483, 532, 930
SseBI	AGGCCT	2 cut(s)	549, 727
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	887
StuI	AGGCCT	2 cut(s)	549, 727
StyD4I	CCNGG	3 cut(s)	408, 713, 1017
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	503, 518
TasI	AATT	5 cut(s)	212, 310, 483, 532, 930
TatI	WGTACW	2 cut(s)	674, 1084
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	703, 1013
Tru1I	TTAA	2 cut(s)	612, 1093
Tru9I	TTAA	2 cut(s)	612, 1093
TscAI	CASTG	4 cut(s)	271, 677, 726, 930
TseFI	GTSAC	2 cut(s)	98, 436
TseI	GCWGC	3 cut(s)	602, 863, 1042
Tsp45I	GTSAC	2 cut(s)	98, 436
TspDTI	ATGAA	3 cut(s)	151, 542, 561
TspGWI	ACGGA	1 cut(s)	963
TspRI	CASTG	4 cut(s)	271, 677, 726, 930
VpaK11BI	GGWCC	2 cut(s)	316, 818
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	1091
XmiI	GTMKAC	2 cut(s)	117, 518
XspI	CTAG	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.