Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002474

Physical Location & Seq

Genomic Coordinates Forward (+)

25897261 .. 25900266

Gene Structure 3006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0272900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAATATTTGCATTACCAACTCCAGTTTCTTGACGACACGCTCAGCTCGCACCGCCAAACCAATCGACCCCGAATCGAAATCCGGAGGCATCTCGGCATCTGATAGAATGGCCTCTGATCTCAAACCAGAGTTATCCAAGGAAGCATTTTTTTGGTCTGAAGGTCTGGGAATGGGAAATTCCTGTATCAGTAGCAGGAGGTCGTGTGCATTCCGTTTCTTAACATCAAAGAGAAGTGTGGGTTTAGGGTTGTGCTTGGAGCCCAGAGACCATCTTGGTGTACCCCTCCGCCCGTCAATCCCAACTCGCACTGCCCTCACTCTGAAATTTGGACGGGAGAGCTCAAGAAACCTAGGGATTGAGCTCGCCGGAACCACTGCTACCCCGACGCAAACTACCTCTGCCATTCCAGCACTTCCGGCGGTCGGCCTCGCCCTTCAGCCATGGGAAGAATTCGACGGAGCCTGGTGTGGGTGCTCACCAAACCTCGTCGGCAATCTAGTCCGCCTCCAAGCCCCGACAAGGCTTCACTCCCAAATCCGCTGCATGGATCCGAGCACCACCGCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004856 GO:0005975 GO:0005996 GO:0005997 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019321 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3657 DUF676

Protein Analysis

190

Amino Acids

20.37

Weight (kDa)

8.99

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09980 AT1G09980 AT1G09980 AT1G58350 AT1G58350 AT1G58350 AT1G58350
fragaria_vesca	FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540 FvH4_5g33540
malus_domestica	MD08G1211000.v1.1 MD15G1398300.v1.1
prunus_persica	Prupe.1G542900_v2.0.a1
pyrus_communis	pycom08g18180
rosa_chinensis	RchiOBHm_Chr7g0232361
rosa_laevigata	RLG00000001352
rosa_multiflora	Rmu_sc0000222.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228420
rosa_rugosa	Rorug07G0272900 Rorug07G0273000
rosa_samantha	Rh7AG426700 Rh7BG400500 Rh7CG446500 Rh7DG418100
rosa_wichuraiana	Rw7G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	6 cut(s)	54, 289, 422, 505, 541, 564
AclWI	GGATC	2 cut(s)	545, 558
AcsI	RAATTY	3 cut(s)	178, 326, 452
AcuI	CTGAAG	2 cut(s)	180, 422
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	4 cut(s)	425, 471, 522, 547
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	47, 342, 364
AluI	AGCT	3 cut(s)	47, 342, 364
Alw21I	GWGCWC	4 cut(s)	344, 366, 479, 560
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	545, 558
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	2 cut(s)	111, 427
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	3 cut(s)	178, 326, 452
AspA2I	CCTAGG	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	471
AvrII	CCTAGG	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	3 cut(s)	264, 344, 366
Bbv12I	GWGCWC	4 cut(s)	344, 366, 479, 560
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	353, 500
BisI	GCNGC	1 cut(s)	544
BlnI	CCTAGG	1 cut(s)	352
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	466
BmiI	GGNNCC	4 cut(s)	261, 373, 463, 552
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	99, 107
BpmI	CTGGAG	1 cut(s)	7
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	138, 352, 443
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	4 cut(s)	425, 471, 522, 547
Bse1I	ACTGG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	3 cut(s)	138, 352, 443
BseLI	CCNNNNNNNGG	4 cut(s)	425, 471, 522, 547
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	113, 429
BsiEI	CGRYCG	1 cut(s)	426
BsiHKAI	GWGCWC	4 cut(s)	344, 366, 479, 560
BsiSI	CCGG	3 cut(s)	84, 369, 419
BslI	CCNNNNNNNGG	4 cut(s)	425, 471, 522, 547
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	113, 429
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	264, 344, 366, 479, 560
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	118, 550
Bsp1720I	GCTNAGC	1 cut(s)	43
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	6 cut(s)	54, 289, 422, 505, 541, 564
BspANI	GGCC	2 cut(s)	113, 429
BspCNI	CTCAG	1 cut(s)	56
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	4 cut(s)	261, 373, 463, 552
BspPI	GGATC	2 cut(s)	545, 558
BspTNI	GGTCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	138, 352, 443
BssMI	GATC	2 cut(s)	118, 550
BssT1I	CCWWGG	3 cut(s)	138, 352, 443
Bst2UI	CCWGG	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	49, 366
BstDEI	CTNAG	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	443
BstKTI	GATC	2 cut(s)	121, 553
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	118, 550
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 53, 410, 419
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	113, 429
BtgI	CCRYGG	1 cut(s)	443
BtsI	GCAGTG	2 cut(s)	309, 375
BtsIMutI	CAGTG	2 cut(s)	309, 375
Cac8I	GCNNGC	2 cut(s)	49, 366
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	444, 547
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	2 cut(s)	120, 552
DpnII	GATC	2 cut(s)	118, 550
EciI	GGCGGA	2 cut(s)	278, 494
Ecl136II	GAGCTC	2 cut(s)	342, 364
Eco130I	CCWWGG	3 cut(s)	138, 352, 443
Eco24I	GRGCYC	3 cut(s)	264, 344, 366
Eco31I	GGTCTC	1 cut(s)	261
Eco53kI	GAGCTC	2 cut(s)	342, 364
Eco57I	CTGAAG	2 cut(s)	180, 422
EcoICRI	GAGCTC	2 cut(s)	342, 364
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	3 cut(s)	138, 352, 443
EcoT38I	GRGCYC	3 cut(s)	264, 344, 366
ErhI	CCWWGG	3 cut(s)	138, 352, 443
FaeI	CATG	2 cut(s)	447, 550
FaiI	YATR	2 cut(s)	445, 548
FatI	CATG	2 cut(s)	443, 546
Fnu4HI	GCNGC	1 cut(s)	544
FriOI	GRGCYC	3 cut(s)	264, 344, 366
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	2 cut(s)	353, 500
GluI	GCNGC	1 cut(s)	544
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	2 cut(s)	113, 429
HapII	CCGG	3 cut(s)	84, 369, 419
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	447, 550
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	3 cut(s)	84, 369, 419
HphI	GGTGA	1 cut(s)	471
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	5 cut(s)	103, 118, 160, 324, 555
Hpy188III	TCNNGA	3 cut(s)	31, 84, 345
Hpy8I	GTNNAC	1 cut(s)	281
Hpy99I	CGWCG	3 cut(s)	391, 461, 494
HpyAV	CCTTC	2 cut(s)	155, 446
HpyCH4V	TGCA	3 cut(s)	12, 209, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 53, 410, 419
HpyF3I	CTNAG	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	447, 550
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	118, 550
LmnI	GCTCC	2 cut(s)	259, 461
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	99, 107
MaeI	CTAG	2 cut(s)	353, 500
MalI	GATC	2 cut(s)	120, 552
MboI	GATC	2 cut(s)	118, 550
MboII	GAAGA	1 cut(s)	461
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	5 cut(s)	264, 344, 366, 479, 560
MluCI	AATT	3 cut(s)	178, 326, 452
MnlI	CCTC	9 cut(s)	80, 124, 192, 296, 326, 409, 440, 497, 518
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	3 cut(s)	84, 369, 419
MspR9I	CCNGG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	4 cut(s)	48, 53, 410, 419
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	118, 550
NlaIII	CATG	2 cut(s)	447, 550
NlaIV	GGNNCC	4 cut(s)	261, 373, 463, 552
NmeAIII	GCCGAG	1 cut(s)	74
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	545
Psp124BI	GAGCTC	2 cut(s)	344, 366
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	4 cut(s)	261, 373, 463, 552
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	2 cut(s)	344, 366
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	2 cut(s)	118, 550
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	5 cut(s)	264, 344, 366, 479, 560
SetI	ASST	8 cut(s)	49, 166, 203, 344, 354, 366, 401, 489
SfaNI	GCATC	2 cut(s)	99, 107
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	178, 326, 452
SsiI	CCGC	6 cut(s)	54, 289, 422, 505, 541, 564
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	2 cut(s)	353, 500
SstI	GAGCTC	2 cut(s)	344, 366
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	3 cut(s)	138, 352, 443
TaqI	TCGA	3 cut(s)	66, 77, 456
TasI	AATT	3 cut(s)	178, 326, 452
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	2 cut(s)	316, 382
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	203, 474
TspRI	CASTG	2 cut(s)	316, 382
XapI	RAATTY	3 cut(s)	178, 326, 452
XmaJI	CCTAGG	1 cut(s)	352
XspI	CTAG	2 cut(s)	353, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.