Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003418

Physical Location & Seq

Genomic Coordinates Reverse (-)

33107566 .. 33118009

Gene Structure 10444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATTGGGGCGTGGACAATCCTTCACTCTTCTCAGGCGGCAGCGCTAGCGTGGATGATGGGTATTGGGCGATCGACGGTGACGCAGGACTTGAAGAAGTGATGGGTTTTCTTGAACAGTCGTTTCCTGATGTTGAAATAGCTATTGAACTTGGGAAAGTACGCTCTTCCTTTTCTTTAGCAATTGCAATATTGAAAGAAGCTAGAGGAAACAATGGAGAAATTTTCACAAGGAATGACAATGTTGAGAATTCTATTGATAGCTACCGCGAAGCCTTTGACGTTGTTGACCTGATGGTATATAATGGTACATGCTGTTGGCTCTCTTTTACAATATATCCGGCTGGGAATCGGCCTGTCTGCAAGGTGCTGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009059 GO:0009664 GO:0009719 GO:0009725 GO:0009735 GO:0009832 GO:0009987 GO:0010033 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016741 GO:0017144 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

126

Amino Acids

13.8

Weight (kDa)

4.05

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78240 AT1G78240
fragaria_vesca	FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD00G1010000.v1.1 MD08G1184700.v1.1
prunus_persica	Prupe.1G518800_v2.0.a1
pyrus_communis	pycom08g15840 pycom15g33280
rosa_chinensis	RchiOBHm_Chr7g0243891
rosa_laevigata	RLG00000000826
rosa_multiflora	Rmu_ssc0000352.1_g000007
rosa_roxburghii	Rroxscaffold_3G00221690
rosa_rugosa	Rorug07G0321800 Rorug07G0321900 Rorug07G0322000 Rorug07G0322100 Rorug07G0322200 Rorug07G0322300
rosa_samantha	Rh7AG476700 Rh7BG448000 Rh7CG495100
rosa_wichuraiana	Rw7G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	39, 268
AcsI	RAATTY	2 cut(s)	222, 250
AfaI	GTAC	2 cut(s)	162, 310
AfeI	AGCGCT	1 cut(s)	46
AgsI	TTSAA	5 cut(s)	95, 116, 137, 149, 196
AluBI	AGCT	3 cut(s)	143, 203, 264
AluI	AGCT	3 cut(s)	143, 203, 264
Aor51HI	AGCGCT	1 cut(s)	46
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	2 cut(s)	222, 250
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	92
AsuNHI	GCTAGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	3 cut(s)	53, 97, 289
BfaI	CTAG	2 cut(s)	48, 204
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	2 cut(s)	40, 43
BlsI	GCNGC	2 cut(s)	41, 44
BmtI	GCTAGC	1 cut(s)	51
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	2 cut(s)	39, 268
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	172
BssMI	GATC	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	80, 120
Bst6I	CTCTTC	2 cut(s)	35, 172
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	315
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	47
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	161, 309
CviAII	CATG	1 cut(s)	312
CviJI	RGCY	7 cut(s)	143, 203, 264, 275, 322, 344, 355
CviKI_1	RGCY	7 cut(s)	143, 203, 264, 275, 322, 344, 355
CviQI	GTAC	2 cut(s)	161, 309
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	35, 172
EarI	CTCTTC	2 cut(s)	35, 172
Eco47III	AGCGCT	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	315
FaiI	YATR	4 cut(s)	301, 303, 313, 337
FatI	CATG	1 cut(s)	311
Fnu4HI	GCNGC	2 cut(s)	40, 43
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	40, 43
FspBI	CTAG	2 cut(s)	48, 204
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	40, 43
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	16, 289
Hpy188III	TCNNGA	2 cut(s)	113, 128
Hpy8I	GTNNAC	2 cut(s)	16, 289
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	2 cut(s)	80, 120
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	188, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	315
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	21, 72, 141, 305, 330, 354, 356, 369
Lsp1109I	GCAGC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	48, 204
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	22, 107, 159
MfeI	CAATTG	1 cut(s)	183
MluCI	AATT	3 cut(s)	183, 222, 250
MnlI	CCTC	1 cut(s)	200
MspI	CCGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	1 cut(s)	72
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	41, 44
Ple19I	CGATCG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	162, 310
RsaNI	GTAC	2 cut(s)	161, 309
SapI	GCTCTTC	1 cut(s)	172
SatI	GCNGC	2 cut(s)	40, 43
Sau3AI	GATC	1 cut(s)	72
SetI	ASST	6 cut(s)	145, 205, 266, 285, 294, 369
Sse9I	AATT	3 cut(s)	183, 222, 250
SsiI	CCGC	2 cut(s)	39, 268
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	48, 204
TaaI	ACNGT	2 cut(s)	80, 120
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	183, 222, 250
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	222, 250
XceI	RCATGY	1 cut(s)	315
XspI	CTAG	2 cut(s)	48, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.