Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003418

Physical Location & Seq

Genomic Coordinates Forward (+)

33178288 .. 33180205

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0322100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGAGTGCCAGAGCTAGTTTTGAGTGGAAGGCCTTCAAACAGTCAGCCCAATTTCCTGCAGAAGCAAAACTGGAAAACTGGACCCGTAAGGAGTCCAGCAGAGATTCTGGCCCAAAGTTGCAAAATTCTGCGTTTTCAAGTAAGAAGAAGAAGAAGAAGAAGGAGCCGGGAATATCATATCCTCCATCGTCCACCTTGAAGGCTTGCTTCCAAGATTCAAGATTTCAACGTTTCAAGCACTCCATCTCCATCTCCAACTCACGGTGTGTACCCTCAATCCCCGGAATAGAACGATCCCTATTTGCTTATACTACTAACGATGTTTTCAGGGCAAAGAGGTTGAAATCTCCATTATGCCCTCCCTGGGGTTTTTCAGCCTGCAAATGTGGGGCTCCATGTTGGCTCCAACTCAACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009059 GO:0009664 GO:0009719 GO:0009725 GO:0009735 GO:0009832 GO:0009987 GO:0010033 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016741 GO:0017144 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

140

Amino Acids

15.84

Weight (kDa)

10.04

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78240 AT1G78240
fragaria_vesca	FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD00G1010000.v1.1 MD08G1184700.v1.1
prunus_persica	Prupe.1G518800_v2.0.a1
pyrus_communis	pycom08g15840 pycom15g33280
rosa_chinensis	RchiOBHm_Chr7g0243891
rosa_laevigata	RLG00000000826
rosa_multiflora	Rmu_ssc0000352.1_g000007
rosa_roxburghii	Rroxscaffold_3G00221690
rosa_rugosa	Rorug07G0321800 Rorug07G0321900 Rorug07G0322000 Rorug07G0322100 Rorug07G0322200 Rorug07G0322300
rosa_samantha	Rh7AG476700 Rh7BG448000 Rh7CG495100
rosa_wichuraiana	Rw7G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	232
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	127
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	264, 367, 368
AgsI	TTSAA	7 cut(s)	40, 141, 202, 222, 230, 238, 346
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	33, 112
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	84, 113
AsuC2I	CCSGG	2 cut(s)	171, 285
AvaII	GGWCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	397
BccI	CCATC	3 cut(s)	196, 254, 260
BciT130I	CCWGG	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	171, 285
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	60
Bme1390I	CCNGG	3 cut(s)	171, 285, 367
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	84, 113
BmiI	GGNNCC	4 cut(s)	86, 168, 396, 407
BmrFI	CCNGG	3 cut(s)	171, 285, 367
BpuMI	CCSGG	2 cut(s)	171, 285
BsaJI	CCNNGG	3 cut(s)	283, 365, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 367, 368
Bse1I	ACTGG	2 cut(s)	78, 86
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	283, 365, 366
BseLI	CCNNNNNNNGG	3 cut(s)	264, 367, 368
BseNI	ACTGG	2 cut(s)	78, 86
BshFI	GGCC	2 cut(s)	35, 114
BsiSI	CCGG	2 cut(s)	170, 285
BslI	CCNNNNNNNGG	3 cut(s)	264, 367, 368
BsnI	GGCC	2 cut(s)	35, 114
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	35, 114
BspLI	GGNNCC	4 cut(s)	86, 168, 396, 407
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	78, 86
BssECI	CCNNGG	3 cut(s)	283, 365, 366
BssMI	GATC	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	45, 267
BstC8I	GCNNGC	2 cut(s)	208, 382
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	169, 283, 365
BstSFI	CTRYAG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	35, 114
Cac8I	GCNNGC	2 cut(s)	208, 382
Cfr13I	GGNCC	2 cut(s)	84, 113
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	9 cut(s)	17, 35, 50, 114, 169, 206, 380, 395, 406
CviKI_1	RGCY	9 cut(s)	17, 35, 50, 114, 169, 206, 380, 395, 406
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
DraIII	CACNNNGTG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	1 cut(s)	402
FaiI	YATR	4 cut(s)	181, 312, 358, 400
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	35, 114
HapII	CCGG	2 cut(s)	170, 285
Hin1II	CATG	1 cut(s)	402
HinfI	GANTC	3 cut(s)	95, 107, 218
HpaII	CCGG	2 cut(s)	170, 285
Hpy166II	GTNNAC	2 cut(s)	195, 272
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	195, 272
HpyAV	CCTTC	4 cut(s)	25, 46, 157, 196
HpyCH4III	ACNGT	2 cut(s)	45, 267
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	62, 124, 384
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	166, 400, 411
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	232
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	6 cut(s)	16, 160, 163, 166, 169, 172
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	53, 127
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	195, 286, 333, 372
MroXI	GAANNNNTTC	1 cut(s)	35
MspI	CCGG	2 cut(s)	170, 285
MspR9I	CCNGG	3 cut(s)	171, 285, 367
MvaI	CCWGG	1 cut(s)	367
NciI	CCSGG	2 cut(s)	171, 285
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	4 cut(s)	86, 168, 396, 407
PasI	CCCWGGG	1 cut(s)	366
PceI	AGGCCT	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	107, 218
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp1406I	AACGTT	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	4 cut(s)	86, 168, 396, 407
PspPI	GGNCC	2 cut(s)	84, 113
PstI	CTGCAG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	2 cut(s)	84, 113
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	171, 285, 367
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	4 cut(s)	19, 200, 235, 344
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	84
Sse9I	AATT	2 cut(s)	53, 127
SseBI	AGGCCT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	169, 283, 365
TaaI	ACNGT	2 cut(s)	45, 267
TaiI	ACGT	1 cut(s)	235
TasI	AATT	2 cut(s)	53, 127
TfiI	GAWTC	2 cut(s)	107, 218
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.