Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003418

Physical Location & Seq

Genomic Coordinates Reverse (-)

33153864 .. 33154718

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0322000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTTCCCTCCAGATCACCAAGATGGAATCCGAAATTCCTACTGAGCTTCTCATAGCTCACATTATGCAACTCCATGCAAGCATATCCAAGCTCGACTCCCTTCGCCCTTCGAAGCAAGTCAACTCCCTCTTCACCCAGCTGGTCAAGTTGTGCACTCTTCCATCTTCGTTGGATATTCATGACTTACCCGAAGAGGTCCAAATTATGCGCGAGAGTCTCATTAGTCTCTGCAGCCGAGCTGAAGGTCTGTTAGAGCTTGAGTTTGCCACACTCCTAGGGAAAACCTCTCAACCCATGAACAACCTTAATCTTTTCCCCTACTATGGTAATTATGTCCTGCTGGCCAATTTGGAGAACAAAATTCTTAATGACAGTGGGGTGGTGCATCCTAACAAGGTCGCCTTTATCGGGTCAGGACCAATGCCTCTCACTTCCATTGTAATGGCTACCCATCACATGAAGTCCGCTCATTTCGATAACTTTGATATCGATGACAAGGCCAATGAGGTGGCTCGCCGGATTGTTGCCTCAGACGCTGATCTAGAGAAGAGGATGAAGTTTGAAACTCGTGATATCATGAAAGTTCGGGAGAGGCTTGCCGAGTATGATTGCATATTTTTGGCAGCTCTGGTGGGAATGAACAAGGAAGACAAGGTGAAGATTCTCGGGCATATTAGGAAGTATATGAAGGACGGAAGCTTTTTGCTTGTGAGGAGTGCGAAAGGGGCTAGGGCATTCTTGTACCCTGTTATTGAGGAGCATGACTTGCTGGGCTTTGAGCTTTTGACAATCTTCCATCCCAATAATGAGGTCATAAACTCTGTTGTTCTTGTGCGCAAACCTATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009059 GO:0009664 GO:0009719 GO:0009725 GO:0009735 GO:0009832 GO:0009987 GO:0010033 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016741 GO:0017144 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

284

Amino Acids

32.08

Weight (kDa)

6.37

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAS	PF03059	15 - 282	1.8e-104	Nicotianamine synthase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78240 AT1G78240
fragaria_vesca	FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD00G1010000.v1.1 MD08G1184700.v1.1
prunus_persica	Prupe.1G518800_v2.0.a1
pyrus_communis	pycom08g15840 pycom15g33280
rosa_chinensis	RchiOBHm_Chr7g0243891
rosa_laevigata	RLG00000000826
rosa_multiflora	Rmu_ssc0000352.1_g000007
rosa_roxburghii	Rroxscaffold_3G00221690
rosa_rugosa	Rorug07G0321800 Rorug07G0321900 Rorug07G0322000 Rorug07G0322100 Rorug07G0322200 Rorug07G0322300
rosa_samantha	Rh7AG476700 Rh7BG448000 Rh7CG495100
rosa_wichuraiana	Rw7G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	839
AccBSI	CCGCTC	1 cut(s)	470
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	468
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	36, 363
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	2 cut(s)	326, 411
AgsI	TTSAA	1 cut(s)	566
AluBI	AGCT	9 cut(s)	49, 59, 94, 142, 242, 259, 629, 702, 784
AluI	AGCT	9 cut(s)	49, 59, 94, 142, 242, 259, 629, 702, 784
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	224, 233
Alw44I	GTGCAC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	2 cut(s)	345, 501
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	234, 626
ApoI	RAATTY	2 cut(s)	36, 363
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	213, 840
AspS9I	GGNCC	2 cut(s)	199, 419
AsuHPI	GGTGA	3 cut(s)	10, 127, 670
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	2 cut(s)	199, 419
AvrII	CCTAGG	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	347
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	246, 638
BccI	CCATC	4 cut(s)	19, 172, 462, 807
BcoDI	GTCTC	2 cut(s)	224, 233
BfaI	CTAG	3 cut(s)	278, 545, 732
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	2 cut(s)	235, 627
BlnI	CCTAGG	1 cut(s)	277
BlsI	GCNGC	2 cut(s)	236, 628
Bme18I	GGWCC	2 cut(s)	199, 419
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	199, 419
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	657
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 411
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	3 cut(s)	388, 561, 799
BseLI	CCNNNNNNNGG	2 cut(s)	326, 411
BseMII	CTCAG	2 cut(s)	36, 546
BseRI	GAGGAG	2 cut(s)	730, 773
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	246, 638
BseYI	CCCAGC	2 cut(s)	138, 772
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	347, 503
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	326, 411
BsmAI	GTCTC	2 cut(s)	224, 233
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	347, 503
BsoBI	CYCGRG	1 cut(s)	668
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	15, 541
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	2 cut(s)	347, 503
BspCNI	CTCAG	2 cut(s)	37, 545
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	2 cut(s)	181, 579
BspMAI	CTGCAG	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	15, 541
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	4 cut(s)	137, 165, 189, 545
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	4 cut(s)	82, 345, 517, 600
BstDEI	CTNAG	2 cut(s)	45, 532
BstF5I	GGATG	3 cut(s)	388, 561, 799
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	213, 840
BstKTI	GATC	2 cut(s)	18, 544
BstMAI	GTCTC	2 cut(s)	224, 233
BstMBI	GATC	2 cut(s)	15, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 728, 769
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	246, 638
BstV2I	GAAGAC	1 cut(s)	657
BstXI	CCANNNNNNTGG	2 cut(s)	445, 511
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	347, 503
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	388, 561, 799
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	82, 345, 517, 600
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	2 cut(s)	181, 579
CfoI	GCGC	2 cut(s)	213, 840
Cfr13I	GGNCC	2 cut(s)	199, 419
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	6 cut(s)	77, 182, 298, 460, 580, 764
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	2 cut(s)	45, 532
DpnI	GATC	2 cut(s)	17, 543
DpnII	GATC	2 cut(s)	15, 541
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	4 cut(s)	137, 165, 189, 545
EarI	CTCTTC	4 cut(s)	137, 165, 189, 545
Eco130I	CCWWGG	1 cut(s)	277
Eco32I	GATATC	2 cut(s)	490, 577
Eco47I	GGWCC	2 cut(s)	199, 419
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	668
EcoRV	GATATC	2 cut(s)	490, 577
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	80, 185, 301, 463, 583, 767
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	6 cut(s)	76, 181, 297, 459, 579, 763
Fnu4HI	GCNGC	2 cut(s)	235, 627
FokI	GGATG	3 cut(s)	375, 568, 786
Fsp4HI	GCNGC	2 cut(s)	235, 627
FspBI	CTAG	3 cut(s)	278, 545, 732
FspI	TGCGCA	1 cut(s)	839
GlaI	GCGC	2 cut(s)	212, 839
GluI	GCNGC	2 cut(s)	235, 627
GsaI	CCCAGC	2 cut(s)	142, 776
HaeIII	GGCC	2 cut(s)	347, 503
HapII	CCGG	1 cut(s)	520
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	213, 840
Hin1II	CATG	6 cut(s)	80, 185, 301, 463, 583, 767
Hin6I	GCGC	2 cut(s)	211, 838
HinP1I	GCGC	2 cut(s)	211, 838
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	4 cut(s)	29, 98, 217, 664
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	3 cut(s)	10, 127, 670
Hpy166II	GTNNAC	2 cut(s)	124, 156
Hpy188I	TCNGA	2 cut(s)	34, 535
Hpy188III	TCNNGA	7 cut(s)	13, 182, 417, 545, 572, 580, 590
Hpy8I	GTNNAC	2 cut(s)	124, 156
HpyAV	CCTTC	4 cut(s)	113, 120, 239, 685
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	70, 80, 156, 234, 388, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 728, 769
HpyF3I	CTNAG	2 cut(s)	45, 532
Hsp92II	CATG	6 cut(s)	80, 185, 301, 463, 583, 767
HspAI	GCGC	2 cut(s)	211, 838
Kzo9I	GATC	2 cut(s)	15, 541
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	2 cut(s)	246, 638
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	3 cut(s)	278, 545, 732
MalI	GATC	2 cut(s)	17, 543
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	2 cut(s)	15, 541
MboII	GAAGA	8 cut(s)	124, 152, 159, 206, 562, 662, 673, 787
MhlI	GDGCHC	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	5 cut(s)	36, 204, 331, 349, 363
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	92, 226
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	3 cut(s)	309, 369, 853
MslI	CAYNNNNRTG	2 cut(s)	23, 443
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	737
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	536, 728, 769
NdeII	GATC	2 cut(s)	15, 541
NlaIII	CATG	6 cut(s)	80, 185, 301, 463, 583, 767
NmeAIII	GCCGAG	2 cut(s)	263, 628
NsbI	TGCGCA	1 cut(s)	839
NspV	TTCGAA	1 cut(s)	113
PagI	TCATGA	2 cut(s)	181, 579
PctI	GAATGC	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	29, 664
PkrI	GCNGC	2 cut(s)	236, 628
PleI	GAGTC	2 cut(s)	92, 225
PpsI	GAGTC	2 cut(s)	92, 225
PspFI	CCCAGC	2 cut(s)	138, 772
PspPI	GGNCC	2 cut(s)	199, 419
PstI	CTGCAG	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	2 cut(s)	23, 443
SaqAI	TTAA	3 cut(s)	309, 369, 853
SatI	GCNGC	2 cut(s)	235, 627
Sau3AI	GATC	2 cut(s)	15, 541
Sau96I	GGNCC	2 cut(s)	199, 419
SchI	GAGTC	2 cut(s)	92, 226
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	2 cut(s)	199, 419
SmiMI	CAYNNNNRTG	2 cut(s)	23, 443
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	36, 204, 331, 349, 363
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	3 cut(s)	278, 545, 732
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	4 cut(s)	96, 113, 477, 492
TasI	AATT	5 cut(s)	36, 204, 331, 349, 363
TfiI	GAWTC	2 cut(s)	29, 664
Tru1I	TTAA	3 cut(s)	309, 369, 853
Tru9I	TTAA	3 cut(s)	309, 369, 853
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	234, 626
TspDTI	ATGAA	7 cut(s)	170, 314, 476, 572, 596, 656, 704
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	382
VneI	GTGCAC	1 cut(s)	154
VpaK11BI	GGWCC	2 cut(s)	199, 419
XapI	RAATTY	2 cut(s)	36, 363
XbaI	TCTAGA	1 cut(s)	544
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	278, 545, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.