Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003418

Physical Location & Seq

Genomic Coordinates Forward (+)

33187772 .. 33188170

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAAACTTATACTCCTGCAATTTGGATAGCAAGAGCTCCTTCGAATGGAAAAAGTGCTAATGTTAAAGAGAGAATCATTGGGGAACTTCACAAATCTGGCCACCAAAAGATAAATGGAATATATGGAGCTTCATCAAGTTTCATCGCGTCGGATGCATATTCACTTTTGGAAGATGATGAGAAGGTCTCTGAGGTGGTGTTCAGATGCTGGAGACAAGCTTGTGTACAGCTGAAACCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009059 GO:0009664 GO:0009719 GO:0009725 GO:0009735 GO:0009832 GO:0009987 GO:0010033 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016741 GO:0017144 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

81

Amino Acids

9.03

Weight (kDa)

6.72

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78240 AT1G78240
fragaria_vesca	FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD00G1010000.v1.1 MD08G1184700.v1.1
prunus_persica	Prupe.1G518800_v2.0.a1
pyrus_communis	pycom08g15840 pycom15g33280
rosa_chinensis	RchiOBHm_Chr7g0243891
rosa_laevigata	RLG00000000826
rosa_multiflora	Rmu_ssc0000352.1_g000007
rosa_roxburghii	Rroxscaffold_3G00221690
rosa_rugosa	Rorug07G0321800 Rorug07G0321900 Rorug07G0322000 Rorug07G0322100 Rorug07G0322200 Rorug07G0322300
rosa_samantha	Rh7AG476700 Rh7BG448000 Rh7CG495100
rosa_wichuraiana	Rw7G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	38, 131, 221, 232
AluI	AGCT	4 cut(s)	38, 131, 221, 232
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	193, 208
AlwNI	CAGNNNCTG	1 cut(s)	210
AoxI	GGCC	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	193, 208
BmsI	GCATC	2 cut(s)	145, 197
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	193
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	183, 231
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	193, 208
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	226
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	184, 232
BspFNI	CGCG	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	193
BsrGI	TGTACA	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	192, 240
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	149
BstMAI	GTCTC	2 cut(s)	193, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	210
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	227
CviJI	RGCY	5 cut(s)	38, 102, 131, 221, 232
CviKI_1	RGCY	5 cut(s)	38, 102, 131, 221, 232
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	192, 240
EaeI	YGGCCR	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	40
FaiI	YATR	4 cut(s)	12, 124, 126, 160
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	154, 193, 206
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	51, 178
HpyCH4V	TGCA	2 cut(s)	20, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	192, 240
LmnI	GCTCC	2 cut(s)	43, 128
LpnPI	CCDG	3 cut(s)	30, 84, 196
LweI	GCATC	2 cut(s)	145, 197
MboII	GAAGA	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	187
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	7 cut(s)	40, 133, 189, 198, 223, 234, 241
SfaNI	GCATC	2 cut(s)	145, 197
SfuI	TTCGAA	1 cut(s)	44
SgeI	CNNG	8 cut(s)	29, 45, 111, 150, 160, 223, 230, 234
Sse9I	AATT	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	40
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	123, 133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.